Wall clock time and date at job start Mon Mar 30 2020 03:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.09001 * 109.52540 * 2 1
4 4 C 1.53099 * 109.57919 * 239.83474 * 2 1 3
5 5 C 1.53034 * 109.29509 * 182.40331 * 4 2 1
6 6 N 1.46847 * 109.51345 * 59.18740 * 5 4 2
7 7 C 1.46898 * 110.99897 * 174.16738 * 6 5 4
8 8 C 1.52999 * 109.47046 * 66.04707 * 7 6 5
9 9 C 1.53008 * 109.46897 * 180.02562 * 8 7 6
10 10 C 1.50702 * 109.46823 * 179.97438 * 9 8 7
11 11 H 1.07997 * 120.00267 * 0.02562 * 10 9 8
12 12 C 1.37875 * 119.99990 * 179.97438 * 10 9 8
13 13 N 1.31518 * 119.99910 * 0.02562 * 12 10 9
14 14 Si 1.86803 * 120.00453 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.46944 * 89.99983 * 14 12 10
16 16 H 1.48500 * 109.47319 * 210.00395 * 14 12 10
17 17 H 1.48507 * 109.46804 * 330.00481 * 14 12 10
18 18 C 1.46854 * 111.19790 * 298.26320 * 6 5 4
19 19 C 1.53039 * 109.52227 * 61.74204 * 18 6 5
20 20 H 1.08998 * 109.50241 * 180.83988 * 19 18 6
21 21 N 1.46896 * 109.50173 * 60.76152 * 19 18 6
22 22 H 1.09005 * 109.46867 * 299.87003 * 1 2 3
23 23 H 1.08995 * 109.47815 * 59.87438 * 1 2 3
24 24 H 1.09000 * 109.47430 * 179.87650 * 1 2 3
25 25 H 1.09007 * 109.48839 * 62.45973 * 4 2 1
26 26 H 1.09009 * 109.50682 * 302.35759 * 4 2 1
27 27 H 1.09002 * 109.46271 * 299.17460 * 5 4 2
28 28 H 1.08994 * 109.46242 * 179.19760 * 5 4 2
29 29 H 1.09002 * 109.47176 * 186.04194 * 7 6 5
30 30 H 1.08995 * 109.47485 * 306.04221 * 7 6 5
31 31 H 1.09006 * 109.47189 * 299.99807 * 8 7 6
32 32 H 1.08999 * 109.47919 * 59.99934 * 8 7 6
33 33 H 1.08994 * 109.46896 * 299.99486 * 9 8 7
34 34 H 1.08996 * 109.47116 * 59.99766 * 9 8 7
35 35 H 0.97000 * 120.00434 * 179.97438 * 13 12 10
36 36 H 1.08993 * 109.46229 * 181.76227 * 18 6 5
37 37 H 1.09008 * 109.45822 * 301.73281 * 18 6 5
38 38 H 1.00896 * 110.99943 * 60.00103 * 21 19 18
39 39 H 1.00898 * 110.99885 * 183.95346 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0430 -0.7248 -1.2471
5 6 3.5721 -0.7736 -1.2105
6 7 4.0115 -1.4768 0.0015
7 6 5.4685 -1.6643 0.0022
8 6 6.1580 -0.3021 0.1015
9 6 7.6755 -0.4975 0.1016
10 6 8.3547 0.8444 0.1988
11 1 7.7632 1.7462 0.2553
12 6 9.7312 0.9206 0.2166
13 7 10.4515 -0.1776 0.1484
14 14 10.5731 2.5838 0.3364
15 1 10.7833 2.9305 1.7650
16 1 11.8850 2.5257 -0.3571
17 1 9.7203 3.6175 -0.3035
18 6 3.5709 -0.7732 1.2128
19 6 2.0417 -0.7244 1.2482
20 1 1.7152 -0.1891 2.1398
21 7 1.5079 -2.0927 1.2746
22 1 -0.3633 0.5118 0.8912
23 1 -0.3634 0.5157 -0.8888
24 1 -0.3634 -1.0276 -0.0022
25 1 1.7172 -0.1892 -2.1389
26 1 1.6468 -1.7402 -1.2668
27 1 3.9678 0.2420 -1.2048
28 1 3.9398 -1.3017 -2.0902
29 1 5.7552 -2.2796 0.8550
30 1 5.7717 -2.1586 -0.9207
31 1 5.8713 0.3133 -0.7513
32 1 5.8549 0.1923 1.0244
33 1 7.9625 -1.1129 0.9542
34 1 7.9783 -0.9915 -0.8215
35 1 11.4200 -0.1240 0.1606
36 1 3.9379 -1.3008 2.0931
37 1 3.9666 0.2425 1.2071
38 1 1.8342 -2.5925 2.0881
39 1 0.4998 -2.0883 1.2333
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000069720219.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:07
Heat of formation + Delta-G solvation = -40.743879 kcal
Electronic energy + Delta-G solvation = -16223.820184 eV
Core-core repulsion = 13778.202852 eV
Total energy + Delta-G solvation = -2445.617332 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.53884 -37.16642 -35.29834 -33.51465 -32.81051 -29.96040 -29.23514 -27.21760
-24.68657 -23.68338 -23.03651 -21.66367 -19.59665 -18.53955 -16.97890 -16.80124
-16.44851 -16.25071 -15.71125 -15.36777 -14.99340 -14.52128 -14.18486 -13.87321
-13.67264 -13.42654 -13.29845 -13.19281 -12.77004 -12.61839 -12.49357 -12.35437
-12.22511 -11.59050 -11.46453 -11.37459 -11.33063 -11.26820 -11.05282 -10.58072
-9.31260 -9.01481 -8.21813 -6.34637 1.36722 1.38389 1.49518 2.38119
3.07513 3.09741 3.73331 3.79386 3.92170 4.06019 4.13438 4.35639
4.38195 4.48926 4.54269 4.62794 4.65633 4.78087 4.84146 4.89861
4.93304 4.95615 5.05290 5.13561 5.19948 5.23394 5.28492 5.38728
5.46975 5.61733 5.68573 5.81248 6.16720 6.23806 6.29007 6.49473
6.80397 6.81570 7.34713 8.88992
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.046908 B = 0.005117 C = 0.004968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 596.768589 B = 5470.969618 C = 5635.191791
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.090 4.090
3 H 0.059 0.941
4 C -0.093 4.093
5 C 0.051 3.949
6 N -0.513 5.513
7 C 0.062 3.938
8 C -0.125 4.125
9 C 0.029 3.971
10 C -0.546 4.546
11 H 0.054 0.946
12 C 0.001 3.999
13 N -0.932 5.932
14 Si 0.965 3.035
15 H -0.271 1.271
16 H -0.279 1.279
17 H -0.265 1.265
18 C 0.057 3.943
19 C 0.107 3.893
20 H 0.043 0.957
21 N -0.831 5.831
22 H 0.057 0.943
23 H 0.060 0.940
24 H 0.066 0.934
25 H 0.069 0.931
26 H 0.077 0.923
27 H 0.018 0.982
28 H 0.066 0.934
29 H 0.066 0.934
30 H 0.065 0.935
31 H 0.043 0.957
32 H 0.046 0.954
33 H -0.008 1.008
34 H -0.009 1.009
35 H 0.265 0.735
36 H 0.066 0.934
37 H 0.025 0.975
38 H 0.342 0.658
39 H 0.344 0.656
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.385 -0.563 0.997 20.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.109 4.109
3 H 0.077 0.923
4 C -0.130 4.130
5 C -0.077 4.077
6 N -0.235 5.235
7 C -0.066 4.066
8 C -0.164 4.164
9 C -0.009 4.009
10 C -0.584 4.584
11 H 0.072 0.928
12 C -0.197 4.197
13 N -0.572 5.572
14 Si 0.789 3.211
15 H -0.196 1.196
16 H -0.204 1.204
17 H -0.189 1.189
18 C -0.072 4.072
19 C -0.005 4.005
20 H 0.061 0.939
21 N -0.364 5.364
22 H 0.076 0.924
23 H 0.080 0.920
24 H 0.085 0.915
25 H 0.087 0.913
26 H 0.096 0.904
27 H 0.036 0.964
28 H 0.085 0.915
29 H 0.084 0.916
30 H 0.084 0.916
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.010 0.990
34 H 0.010 0.990
35 H 0.073 0.927
36 H 0.085 0.915
37 H 0.044 0.956
38 H 0.155 0.845
39 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -20.064 -1.197 0.306 20.102
hybrid contribution 1.104 1.749 0.963 2.281
sum -18.960 0.552 1.269 19.010
Atomic orbital electron populations
1.21766 0.93421 1.02478 1.02126 1.21226 0.96975 0.97992 0.94735
0.92272 1.21453 0.92859 1.01696 0.97041 1.22130 0.97103 0.95737
0.92777 1.62189 1.10336 1.49001 1.02005 1.22141 0.86810 0.95779
1.01850 1.22002 0.96511 0.98117 0.99808 1.18921 0.91745 0.95489
0.94766 1.21668 0.92184 0.93949 1.50556 0.92780 1.25983 0.98390
1.00702 0.94637 1.70095 1.06145 1.29562 1.51407 0.85454 0.77785
0.79268 0.78586 1.19616 1.20436 1.18950 1.22155 0.95753 0.96107
0.93203 1.21262 0.92502 0.90167 0.96596 0.93944 1.58505 1.14193
1.14629 1.49109 0.92366 0.92044 0.91480 0.91278 0.90431 0.96425
0.91537 0.91554 0.91637 0.93807 0.93493 0.98973 0.99049 0.92667
0.91521 0.95645 0.84454 0.84098
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.08 8.82 71.98 0.63 -1.44 16
2 C -0.09 -1.83 2.61 -10.72 -0.03 -1.86 16
3 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16
4 C -0.09 -2.10 5.21 30.64 0.16 -1.95 16
5 C 0.05 1.47 5.05 86.32 0.44 1.90 16
6 N -0.51 -15.96 4.71 -896.36 -4.22 -20.18 16
7 C 0.06 2.30 5.36 86.30 0.46 2.76 16
8 C -0.13 -5.44 4.45 30.60 0.14 -5.30 16
9 C 0.03 1.56 4.97 29.85 0.15 1.71 16
10 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16
11 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16
12 C 0.00 0.04 5.46 84.65 0.46 0.51 16
13 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16
14 Si 0.96 45.13 29.54 68.60 2.03 47.16 16
15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16
16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16
17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
18 C 0.06 1.60 4.46 86.32 0.38 1.98 16
19 C 0.11 2.29 3.15 44.97 0.14 2.43 16
20 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16
21 N -0.83 -15.76 8.42 -168.46 -1.42 -17.17 16
22 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16
23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
24 H 0.07 0.91 6.55 -2.39 -0.02 0.89 16
25 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16
26 H 0.08 1.84 7.73 -2.38 -0.02 1.82 16
27 H 0.02 0.56 6.75 -2.39 -0.02 0.54 16
28 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16
29 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16
30 H 0.07 2.45 8.06 -2.39 -0.02 2.43 16
31 H 0.04 1.91 6.68 -2.38 -0.02 1.89 16
32 H 0.05 2.02 6.51 -2.39 -0.02 2.00 16
33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16
34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16
35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16
36 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16
37 H 0.03 0.80 6.61 -2.38 -0.02 0.78 16
38 H 0.34 6.09 9.04 -89.70 -0.81 5.28 16
39 H 0.34 5.08 6.97 -89.70 -0.63 4.45 16
Total: -1.00 -65.07 298.19 -0.58 -65.64
By element:
Atomic # 1 Polarization: 13.77 SS G_CDS: -0.42 Total: 13.35 kcal
Atomic # 6 Polarization: -34.39 SS G_CDS: 3.17 Total: -31.21 kcal
Atomic # 7 Polarization: -89.58 SS G_CDS: -5.35 Total: -94.94 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal
Total: -65.07 -0.58 -65.64 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000069720219.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.901 kcal
(2) G-P(sol) polarization free energy of solvation -65.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds