Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.52540 * 2 1 4 4 C 1.53099 * 109.57919 * 239.83474 * 2 1 3 5 5 C 1.53034 * 109.29509 * 182.40331 * 4 2 1 6 6 N 1.46847 * 109.51345 * 59.18740 * 5 4 2 7 7 C 1.46898 * 110.99897 * 174.16738 * 6 5 4 8 8 C 1.52999 * 109.47046 * 66.04707 * 7 6 5 9 9 C 1.53008 * 109.46897 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46823 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00267 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99990 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99910 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00453 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46944 * 89.99983 * 14 12 10 16 16 H 1.48500 * 109.47319 * 210.00395 * 14 12 10 17 17 H 1.48507 * 109.46804 * 330.00481 * 14 12 10 18 18 C 1.46854 * 111.19790 * 298.26320 * 6 5 4 19 19 C 1.53039 * 109.52227 * 61.74204 * 18 6 5 20 20 H 1.08998 * 109.50241 * 180.83988 * 19 18 6 21 21 N 1.46896 * 109.50173 * 60.76152 * 19 18 6 22 22 H 1.09005 * 109.46867 * 299.87003 * 1 2 3 23 23 H 1.08995 * 109.47815 * 59.87438 * 1 2 3 24 24 H 1.09000 * 109.47430 * 179.87650 * 1 2 3 25 25 H 1.09007 * 109.48839 * 62.45973 * 4 2 1 26 26 H 1.09009 * 109.50682 * 302.35759 * 4 2 1 27 27 H 1.09002 * 109.46271 * 299.17460 * 5 4 2 28 28 H 1.08994 * 109.46242 * 179.19760 * 5 4 2 29 29 H 1.09002 * 109.47176 * 186.04194 * 7 6 5 30 30 H 1.08995 * 109.47485 * 306.04221 * 7 6 5 31 31 H 1.09006 * 109.47189 * 299.99807 * 8 7 6 32 32 H 1.08999 * 109.47919 * 59.99934 * 8 7 6 33 33 H 1.08994 * 109.46896 * 299.99486 * 9 8 7 34 34 H 1.08996 * 109.47116 * 59.99766 * 9 8 7 35 35 H 0.97000 * 120.00434 * 179.97438 * 13 12 10 36 36 H 1.08993 * 109.46229 * 181.76227 * 18 6 5 37 37 H 1.09008 * 109.45822 * 301.73281 * 18 6 5 38 38 H 1.00896 * 110.99943 * 60.00103 * 21 19 18 39 39 H 1.00898 * 110.99885 * 183.95346 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2471 5 6 3.5721 -0.7736 -1.2105 6 7 4.0115 -1.4768 0.0015 7 6 5.4685 -1.6643 0.0022 8 6 6.1580 -0.3021 0.1015 9 6 7.6755 -0.4975 0.1016 10 6 8.3547 0.8444 0.1988 11 1 7.7632 1.7462 0.2553 12 6 9.7312 0.9206 0.2166 13 7 10.4515 -0.1776 0.1484 14 14 10.5731 2.5838 0.3364 15 1 10.7833 2.9305 1.7650 16 1 11.8850 2.5257 -0.3571 17 1 9.7203 3.6175 -0.3035 18 6 3.5709 -0.7732 1.2128 19 6 2.0417 -0.7244 1.2482 20 1 1.7152 -0.1891 2.1398 21 7 1.5079 -2.0927 1.2746 22 1 -0.3633 0.5118 0.8912 23 1 -0.3634 0.5157 -0.8888 24 1 -0.3634 -1.0276 -0.0022 25 1 1.7172 -0.1892 -2.1389 26 1 1.6468 -1.7402 -1.2668 27 1 3.9678 0.2420 -1.2048 28 1 3.9398 -1.3017 -2.0902 29 1 5.7552 -2.2796 0.8550 30 1 5.7717 -2.1586 -0.9207 31 1 5.8713 0.3133 -0.7513 32 1 5.8549 0.1923 1.0244 33 1 7.9625 -1.1129 0.9542 34 1 7.9783 -0.9915 -0.8215 35 1 11.4200 -0.1240 0.1606 36 1 3.9379 -1.3008 2.0931 37 1 3.9666 0.2425 1.2071 38 1 1.8342 -2.5925 2.0881 39 1 0.4998 -2.0883 1.2333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069720219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -40.743879 kcal Electronic energy + Delta-G solvation = -16223.820184 eV Core-core repulsion = 13778.202852 eV Total energy + Delta-G solvation = -2445.617332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53884 -37.16642 -35.29834 -33.51465 -32.81051 -29.96040 -29.23514 -27.21760 -24.68657 -23.68338 -23.03651 -21.66367 -19.59665 -18.53955 -16.97890 -16.80124 -16.44851 -16.25071 -15.71125 -15.36777 -14.99340 -14.52128 -14.18486 -13.87321 -13.67264 -13.42654 -13.29845 -13.19281 -12.77004 -12.61839 -12.49357 -12.35437 -12.22511 -11.59050 -11.46453 -11.37459 -11.33063 -11.26820 -11.05282 -10.58072 -9.31260 -9.01481 -8.21813 -6.34637 1.36722 1.38389 1.49518 2.38119 3.07513 3.09741 3.73331 3.79386 3.92170 4.06019 4.13438 4.35639 4.38195 4.48926 4.54269 4.62794 4.65633 4.78087 4.84146 4.89861 4.93304 4.95615 5.05290 5.13561 5.19948 5.23394 5.28492 5.38728 5.46975 5.61733 5.68573 5.81248 6.16720 6.23806 6.29007 6.49473 6.80397 6.81570 7.34713 8.88992 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046908 B = 0.005117 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.768589 B = 5470.969618 C = 5635.191791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.059 0.941 4 C -0.093 4.093 5 C 0.051 3.949 6 N -0.513 5.513 7 C 0.062 3.938 8 C -0.125 4.125 9 C 0.029 3.971 10 C -0.546 4.546 11 H 0.054 0.946 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.265 1.265 18 C 0.057 3.943 19 C 0.107 3.893 20 H 0.043 0.957 21 N -0.831 5.831 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.018 0.982 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.046 0.954 33 H -0.008 1.008 34 H -0.009 1.009 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.342 0.658 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.385 -0.563 0.997 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.130 4.130 5 C -0.077 4.077 6 N -0.235 5.235 7 C -0.066 4.066 8 C -0.164 4.164 9 C -0.009 4.009 10 C -0.584 4.584 11 H 0.072 0.928 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.789 3.211 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.072 4.072 19 C -0.005 4.005 20 H 0.061 0.939 21 N -0.364 5.364 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.155 0.845 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.064 -1.197 0.306 20.102 hybrid contribution 1.104 1.749 0.963 2.281 sum -18.960 0.552 1.269 19.010 Atomic orbital electron populations 1.21766 0.93421 1.02478 1.02126 1.21226 0.96975 0.97992 0.94735 0.92272 1.21453 0.92859 1.01696 0.97041 1.22130 0.97103 0.95737 0.92777 1.62189 1.10336 1.49001 1.02005 1.22141 0.86810 0.95779 1.01850 1.22002 0.96511 0.98117 0.99808 1.18921 0.91745 0.95489 0.94766 1.21668 0.92184 0.93949 1.50556 0.92780 1.25983 0.98390 1.00702 0.94637 1.70095 1.06145 1.29562 1.51407 0.85454 0.77785 0.79268 0.78586 1.19616 1.20436 1.18950 1.22155 0.95753 0.96107 0.93203 1.21262 0.92502 0.90167 0.96596 0.93944 1.58505 1.14193 1.14629 1.49109 0.92366 0.92044 0.91480 0.91278 0.90431 0.96425 0.91537 0.91554 0.91637 0.93807 0.93493 0.98973 0.99049 0.92667 0.91521 0.95645 0.84454 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.82 71.98 0.63 -1.44 16 2 C -0.09 -1.83 2.61 -10.72 -0.03 -1.86 16 3 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 4 C -0.09 -2.10 5.21 30.64 0.16 -1.95 16 5 C 0.05 1.47 5.05 86.32 0.44 1.90 16 6 N -0.51 -15.96 4.71 -896.36 -4.22 -20.18 16 7 C 0.06 2.30 5.36 86.30 0.46 2.76 16 8 C -0.13 -5.44 4.45 30.60 0.14 -5.30 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 11 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 12 C 0.00 0.04 5.46 84.65 0.46 0.51 16 13 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 14 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 C 0.06 1.60 4.46 86.32 0.38 1.98 16 19 C 0.11 2.29 3.15 44.97 0.14 2.43 16 20 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 21 N -0.83 -15.76 8.42 -168.46 -1.42 -17.17 16 22 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.91 6.55 -2.39 -0.02 0.89 16 25 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 1.84 7.73 -2.38 -0.02 1.82 16 27 H 0.02 0.56 6.75 -2.39 -0.02 0.54 16 28 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.45 8.06 -2.39 -0.02 2.43 16 31 H 0.04 1.91 6.68 -2.38 -0.02 1.89 16 32 H 0.05 2.02 6.51 -2.39 -0.02 2.00 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 37 H 0.03 0.80 6.61 -2.38 -0.02 0.78 16 38 H 0.34 6.09 9.04 -89.70 -0.81 5.28 16 39 H 0.34 5.08 6.97 -89.70 -0.63 4.45 16 Total: -1.00 -65.07 298.19 -0.58 -65.64 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -0.42 Total: 13.35 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 3.17 Total: -31.21 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -5.35 Total: -94.94 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.07 -0.58 -65.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.901 kcal (2) G-P(sol) polarization free energy of solvation -65.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds