Wall clock time and date at job start Mon Mar 30 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.57673 * 2 1 4 4 C 1.53124 * 109.52107 * 120.15981 * 2 1 3 5 5 C 1.53041 * 109.27510 * 177.55770 * 4 2 1 6 6 N 1.46842 * 109.52407 * 300.81747 * 5 4 2 7 7 C 1.46903 * 111.00077 * 185.84059 * 6 5 4 8 8 C 1.53006 * 109.46708 * 45.79369 * 7 6 5 9 9 C 1.52995 * 109.46836 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47119 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99990 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00049 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00108 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99908 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47189 * 90.00358 * 14 12 10 16 16 H 1.48505 * 109.46800 * 209.99955 * 14 12 10 17 17 H 1.48494 * 109.47416 * 329.99890 * 14 12 10 18 18 C 1.46846 * 111.19700 * 61.74724 * 6 5 4 19 19 C 1.53036 * 109.52384 * 298.25435 * 18 6 5 20 20 H 1.09006 * 109.50216 * 299.24086 * 19 18 6 21 21 N 1.46902 * 109.50756 * 179.11989 * 19 18 6 22 22 H 1.08995 * 109.47521 * 180.15734 * 1 2 3 23 23 H 1.09004 * 109.47432 * 300.16422 * 1 2 3 24 24 H 1.09007 * 109.47216 * 60.15766 * 1 2 3 25 25 H 1.08997 * 109.50272 * 57.61968 * 4 2 1 26 26 H 1.08997 * 109.53375 * 297.51908 * 4 2 1 27 27 H 1.09006 * 109.45562 * 180.80294 * 5 4 2 28 28 H 1.08991 * 109.45245 * 60.83364 * 5 4 2 29 29 H 1.08996 * 109.47016 * 165.79073 * 7 6 5 30 30 H 1.08996 * 109.47351 * 285.79334 * 7 6 5 31 31 H 1.08999 * 109.46912 * 300.00107 * 8 7 6 32 32 H 1.08996 * 109.47244 * 59.99898 * 8 7 6 33 33 H 1.08999 * 109.47333 * 299.99696 * 9 8 7 34 34 H 1.08996 * 109.47412 * 59.99849 * 9 8 7 35 35 H 0.97004 * 120.00061 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46089 * 178.24127 * 18 6 5 37 37 H 1.08994 * 109.45639 * 58.26845 * 18 6 5 38 38 H 1.00898 * 110.99303 * 60.00227 * 21 19 18 39 39 H 1.00898 * 110.99859 * 183.95465 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7251 1.2478 5 6 3.5708 -0.7752 1.2116 6 7 4.0101 -1.4790 0.0000 7 6 5.4670 -1.6679 0.0000 8 6 5.9157 -2.1731 1.3728 9 6 7.4330 -2.3693 1.3730 10 6 7.8751 -2.8663 2.7253 11 1 7.1468 -3.0258 3.5065 12 6 9.2094 -3.1173 2.9651 13 7 9.5953 -3.5505 4.1453 14 14 10.4692 -2.8420 1.6135 15 1 10.9746 -1.4474 1.6844 16 1 11.6002 -3.7880 1.7908 17 1 9.8345 -3.0718 0.2908 18 6 3.5708 -0.7752 -1.2116 19 6 2.0417 -0.7251 -1.2478 20 1 1.6446 -1.7400 -1.2675 21 7 1.6029 -0.0026 -2.4493 22 1 -0.3634 -1.0276 0.0028 23 1 -0.3634 0.5164 0.8885 24 1 -0.3634 0.5114 -0.8914 25 1 1.6446 -1.7400 1.2674 26 1 1.7161 -0.1897 2.1397 27 1 3.9377 -1.3035 2.0917 28 1 3.9672 0.2400 1.2059 29 1 5.7386 -2.3980 -0.7624 30 1 5.9565 -0.7182 -0.2155 31 1 5.6439 -1.4431 2.1352 32 1 5.4261 -3.1228 1.5883 33 1 7.7051 -3.0991 0.6105 34 1 7.9222 -1.4194 1.1577 35 1 10.5341 -3.7275 4.3139 36 1 3.9377 -1.3035 -2.0916 37 1 3.9674 0.2400 -1.2058 38 1 1.9312 -0.4603 -3.2864 39 1 0.5992 0.1000 -2.4632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069720221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:09 Heat of formation + Delta-G solvation = -17.864694 kcal Electronic energy + Delta-G solvation = -16008.611214 eV Core-core repulsion = 13563.985998 eV Total energy + Delta-G solvation = -2444.625216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44352 -36.00576 -33.49357 -32.91754 -31.48323 -28.96340 -28.16876 -25.73576 -23.20408 -22.53750 -21.22328 -19.66740 -19.55595 -16.70441 -16.11933 -15.68930 -15.14008 -14.98878 -14.51395 -14.11283 -13.76385 -13.37462 -13.09819 -12.74199 -12.53309 -12.38805 -12.13151 -11.63451 -11.61543 -11.47508 -10.93946 -10.81706 -10.72775 -10.30360 -10.26980 -9.94040 -9.61026 -9.55300 -9.12714 -8.86258 -8.51335 -8.06329 -6.01884 -3.99575 3.32415 3.39688 3.43882 3.93239 4.47545 4.52361 4.65166 4.75044 4.86569 5.26384 5.29966 5.32207 5.41126 5.46815 5.54710 5.60697 5.70933 5.73901 5.81943 5.91119 5.97084 6.04118 6.08652 6.14515 6.19517 6.36166 6.57312 6.61526 6.90068 6.95548 7.20761 7.31457 7.35418 7.40167 7.48050 7.82753 8.57138 9.03351 9.60934 11.11699 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054172 B = 0.004946 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.750601 B = 5659.227750 C = 6070.618494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.111 4.111 5 C 0.046 3.954 6 N -0.538 5.538 7 C 0.055 3.945 8 C -0.104 4.104 9 C -0.013 4.013 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.063 3.937 19 C 0.099 3.901 20 H 0.043 0.957 21 N -0.849 5.849 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.009 0.991 35 H 0.262 0.738 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.340 0.660 39 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 6.802 -11.266 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.082 4.082 6 N -0.263 5.263 7 C -0.072 4.072 8 C -0.142 4.142 9 C -0.051 4.051 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.066 4.066 19 C -0.012 4.012 20 H 0.061 0.939 21 N -0.380 5.380 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.152 0.848 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.477 6.888 -10.880 20.912 hybrid contribution 0.699 0.041 -0.885 1.128 sum -15.778 6.929 -11.765 20.865 Atomic orbital electron populations 1.21841 0.95498 1.01535 1.01640 1.21220 0.95236 0.99921 0.94283 0.90841 1.21664 0.95446 1.00992 0.96875 1.22247 0.94806 0.96815 0.94291 1.61948 1.13907 1.49017 1.01446 1.22295 0.85108 0.99457 1.00366 1.21625 0.98369 1.00707 0.93521 1.19552 0.91558 0.96125 0.97888 1.21144 0.93660 1.43893 0.96941 0.91055 1.25034 0.98525 0.94644 0.95341 1.69919 1.16415 1.46277 1.21806 0.86771 0.81134 0.78136 0.83199 1.20367 1.21406 1.19017 1.21977 0.94178 0.97033 0.93417 1.21319 0.94942 0.95075 0.89882 0.93872 1.58692 1.17637 1.57289 1.04404 0.92880 0.92512 0.92686 0.91190 0.91410 0.89109 0.95101 0.91147 0.95354 0.92513 0.91918 0.96588 0.97277 0.92786 0.91350 0.94385 0.84793 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.92 37.16 0.33 -0.93 16 2 C -0.09 -0.93 2.49 -90.50 -0.22 -1.16 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.30 5.38 -26.65 -0.14 -1.44 16 5 C 0.05 0.66 4.85 -3.83 -0.02 0.64 16 6 N -0.54 -8.09 4.81 -234.68 -1.13 -9.22 16 7 C 0.05 0.94 5.27 -3.82 -0.02 0.92 16 8 C -0.10 -2.11 4.40 -26.73 -0.12 -2.23 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -28.30 13.96 55.43 0.77 -27.53 16 14 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 18 C 0.06 0.82 5.00 -3.83 -0.02 0.80 16 19 C 0.10 1.09 2.90 -67.63 -0.20 0.89 16 20 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 21 N -0.85 -7.77 9.24 -4.59 -0.04 -7.81 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.42 6.63 -51.92 -0.34 0.07 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.40 5.81 -51.93 -0.30 1.10 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.06 1.14 6.21 -51.93 -0.32 0.82 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.34 2.70 9.04 -39.29 -0.36 2.34 16 39 H 0.34 2.59 7.15 -39.29 -0.28 2.31 16 LS Contribution 298.14 15.07 4.49 4.49 Total: -1.00 -30.65 298.14 -8.55 -39.20 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.03 Total: -0.05 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.95 Total: -16.47 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.40 Total: -44.56 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.65 -8.55 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.332 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds