Wall clock time and date at job start Mon Mar 30 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.57673 * 2 1 4 4 C 1.53124 * 109.52107 * 120.15981 * 2 1 3 5 5 C 1.53041 * 109.27510 * 177.55770 * 4 2 1 6 6 N 1.46842 * 109.52407 * 300.81747 * 5 4 2 7 7 C 1.46903 * 111.00077 * 185.84059 * 6 5 4 8 8 C 1.53006 * 109.46708 * 45.79369 * 7 6 5 9 9 C 1.52995 * 109.46836 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47119 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99990 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00049 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00108 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99908 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47189 * 90.00358 * 14 12 10 16 16 H 1.48505 * 109.46800 * 209.99955 * 14 12 10 17 17 H 1.48494 * 109.47416 * 329.99890 * 14 12 10 18 18 C 1.46846 * 111.19700 * 61.74724 * 6 5 4 19 19 C 1.53036 * 109.52384 * 298.25435 * 18 6 5 20 20 H 1.09006 * 109.50216 * 299.24086 * 19 18 6 21 21 N 1.46902 * 109.50756 * 179.11989 * 19 18 6 22 22 H 1.08995 * 109.47521 * 180.15734 * 1 2 3 23 23 H 1.09004 * 109.47432 * 300.16422 * 1 2 3 24 24 H 1.09007 * 109.47216 * 60.15766 * 1 2 3 25 25 H 1.08997 * 109.50272 * 57.61968 * 4 2 1 26 26 H 1.08997 * 109.53375 * 297.51908 * 4 2 1 27 27 H 1.09006 * 109.45562 * 180.80294 * 5 4 2 28 28 H 1.08991 * 109.45245 * 60.83364 * 5 4 2 29 29 H 1.08996 * 109.47016 * 165.79073 * 7 6 5 30 30 H 1.08996 * 109.47351 * 285.79334 * 7 6 5 31 31 H 1.08999 * 109.46912 * 300.00107 * 8 7 6 32 32 H 1.08996 * 109.47244 * 59.99898 * 8 7 6 33 33 H 1.08999 * 109.47333 * 299.99696 * 9 8 7 34 34 H 1.08996 * 109.47412 * 59.99849 * 9 8 7 35 35 H 0.97004 * 120.00061 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.46089 * 178.24127 * 18 6 5 37 37 H 1.08994 * 109.45639 * 58.26845 * 18 6 5 38 38 H 1.00898 * 110.99303 * 60.00227 * 21 19 18 39 39 H 1.00898 * 110.99859 * 183.95465 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7251 1.2478 5 6 3.5708 -0.7752 1.2116 6 7 4.0101 -1.4790 0.0000 7 6 5.4670 -1.6679 0.0000 8 6 5.9157 -2.1731 1.3728 9 6 7.4330 -2.3693 1.3730 10 6 7.8751 -2.8663 2.7253 11 1 7.1468 -3.0258 3.5065 12 6 9.2094 -3.1173 2.9651 13 7 9.5953 -3.5505 4.1453 14 14 10.4692 -2.8420 1.6135 15 1 10.9746 -1.4474 1.6844 16 1 11.6002 -3.7880 1.7908 17 1 9.8345 -3.0718 0.2908 18 6 3.5708 -0.7752 -1.2116 19 6 2.0417 -0.7251 -1.2478 20 1 1.6446 -1.7400 -1.2675 21 7 1.6029 -0.0026 -2.4493 22 1 -0.3634 -1.0276 0.0028 23 1 -0.3634 0.5164 0.8885 24 1 -0.3634 0.5114 -0.8914 25 1 1.6446 -1.7400 1.2674 26 1 1.7161 -0.1897 2.1397 27 1 3.9377 -1.3035 2.0917 28 1 3.9672 0.2400 1.2059 29 1 5.7386 -2.3980 -0.7624 30 1 5.9565 -0.7182 -0.2155 31 1 5.6439 -1.4431 2.1352 32 1 5.4261 -3.1228 1.5883 33 1 7.7051 -3.0991 0.6105 34 1 7.9222 -1.4194 1.1577 35 1 10.5341 -3.7275 4.3139 36 1 3.9377 -1.3035 -2.0916 37 1 3.9674 0.2400 -1.2058 38 1 1.9312 -0.4603 -3.2864 39 1 0.5992 0.1000 -2.4632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069720221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:09 Heat of formation + Delta-G solvation = -40.002980 kcal Electronic energy + Delta-G solvation = -16009.571202 eV Core-core repulsion = 13563.985998 eV Total energy + Delta-G solvation = -2445.585204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48614 -37.23990 -35.33164 -33.88134 -33.31763 -29.95855 -29.56127 -27.16557 -24.57220 -23.60120 -22.72353 -21.17037 -20.53709 -18.89185 -17.10074 -16.72476 -16.35695 -16.20916 -16.04199 -15.56069 -15.03875 -14.78286 -14.32209 -14.06011 -13.73919 -13.60921 -13.39493 -13.12427 -12.96257 -12.57141 -12.43201 -12.32449 -11.82507 -11.71927 -11.61033 -11.53688 -11.40523 -11.12187 -10.99836 -10.76471 -9.61225 -9.27214 -8.29869 -6.34220 1.35506 1.37534 1.49894 2.36111 2.84150 3.05439 3.64891 3.74701 3.86424 3.98352 4.16976 4.21971 4.31220 4.43780 4.47681 4.56085 4.63217 4.69017 4.81026 4.85506 4.89278 4.95997 4.97330 4.98571 5.08123 5.16220 5.23228 5.33817 5.46890 5.48661 5.57994 5.65099 6.07919 6.11276 6.29260 6.31872 6.62831 6.73721 7.30494 8.87133 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.054172 B = 0.004946 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.750601 B = 5659.227750 C = 6070.618494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.064 0.936 4 C -0.106 4.106 5 C 0.044 3.956 6 N -0.543 5.543 7 C 0.065 3.935 8 C -0.094 4.094 9 C -0.010 4.010 10 C -0.533 4.533 11 H 0.030 0.970 12 C 0.003 3.997 13 N -0.952 5.952 14 Si 0.953 3.047 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.246 1.246 18 C 0.063 3.937 19 C 0.106 3.894 20 H 0.040 0.960 21 N -0.849 5.849 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.026 0.974 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.348 0.652 39 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.573 7.654 -13.610 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.084 4.084 6 N -0.268 5.268 7 C -0.063 4.063 8 C -0.132 4.132 9 C -0.048 4.048 10 C -0.571 4.571 11 H 0.048 0.952 12 C -0.194 4.194 13 N -0.593 5.593 14 Si 0.776 3.224 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.169 1.169 18 C -0.065 4.065 19 C -0.006 4.006 20 H 0.058 0.942 21 N -0.382 5.382 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.161 0.839 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.238 7.748 -13.240 23.076 hybrid contribution 0.871 -0.234 -0.069 0.904 sum -16.368 7.513 -13.309 22.394 Atomic orbital electron populations 1.21796 0.93580 1.02033 1.02583 1.21184 0.96800 0.98972 0.93459 0.91780 1.21637 0.93308 1.01297 0.98222 1.22258 0.96767 0.96019 0.93329 1.61949 1.12407 1.49832 1.02564 1.22085 0.86645 0.99514 0.98037 1.21436 0.95765 1.00232 0.95738 1.19495 0.94161 0.96106 0.95034 1.21493 0.93298 1.44057 0.98284 0.95170 1.26046 1.01027 0.94197 0.98088 1.70074 1.17228 1.47684 1.24343 0.85621 0.77974 0.78545 0.80285 1.19166 1.20846 1.16919 1.22035 0.95772 0.96233 0.92508 1.21178 0.93331 0.95174 0.90887 0.94233 1.58637 1.18592 1.56944 1.04057 0.92575 0.91927 0.91468 0.91408 0.90199 0.90980 0.95615 0.90487 0.95141 0.93014 0.93067 0.96033 0.96506 0.92474 0.90710 0.95267 0.83873 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.92 71.98 0.64 -1.42 16 2 C -0.09 -1.65 2.49 -10.71 -0.03 -1.67 16 3 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.11 -2.35 5.38 30.65 0.16 -2.18 16 5 C 0.04 1.24 4.85 86.33 0.42 1.66 16 6 N -0.54 -15.77 4.81 -896.38 -4.31 -20.07 16 7 C 0.06 2.13 5.27 86.30 0.46 2.59 16 8 C -0.09 -3.81 4.40 30.59 0.13 -3.67 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.53 -31.65 9.66 25.60 0.25 -31.40 16 11 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 12 C 0.00 0.18 5.47 84.65 0.46 0.64 16 13 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 14 Si 0.95 44.98 27.47 68.60 1.88 46.87 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 18 C 0.06 1.54 5.00 86.33 0.43 1.97 16 19 C 0.11 2.11 2.90 44.97 0.13 2.24 16 20 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 21 N -0.85 -13.38 9.24 -168.45 -1.56 -14.94 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.81 6.63 -2.38 -0.02 0.80 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 2.27 5.81 -2.38 -0.01 2.25 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.03 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.05 2.12 6.21 -2.39 -0.01 2.11 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 34 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.35 4.63 9.04 -89.70 -0.81 3.82 16 39 H 0.35 4.33 7.15 -89.70 -0.64 3.68 16 Total: -1.00 -66.21 298.14 -0.99 -67.20 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.49 Total: 13.17 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 3.18 Total: -31.62 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -5.56 Total: -95.62 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Total: -66.21 -0.99 -67.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069720221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.200 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds