Wall clock time and date at job start Mon Mar 30 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47159 * 2 1 4 4 N 1.46895 * 109.46875 * 179.97438 * 3 2 1 5 5 C 1.46901 * 110.99747 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47075 * 175.30619 * 5 4 3 7 7 H 1.08996 * 109.58615 * 303.94959 * 6 5 4 8 8 C 1.53192 * 109.58700 * 64.23427 * 6 5 4 9 9 C 1.53037 * 109.31211 * 174.42158 * 8 6 5 10 10 C 1.53042 * 109.53865 * 298.63426 * 9 8 6 11 11 C 1.53185 * 109.31321 * 61.36844 * 10 9 8 12 12 N 1.46930 * 109.58804 * 183.66990 * 6 5 4 13 13 C 1.36930 * 120.62899 * 6.60446 * 12 6 5 14 14 H 1.08001 * 120.00515 * 327.86085 * 13 12 6 15 15 C 1.38817 * 120.00428 * 147.86072 * 13 12 6 16 16 N 1.31627 * 119.99236 * 349.21265 * 15 13 12 17 17 Si 1.86792 * 120.00626 * 169.21616 * 15 13 12 18 18 H 1.48495 * 109.47364 * 89.99845 * 17 15 13 19 19 H 1.48501 * 109.47344 * 209.99937 * 17 15 13 20 20 H 1.48497 * 109.46998 * 330.00039 * 17 15 13 21 21 H 1.08996 * 109.47465 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47286 * 300.00577 * 1 2 3 23 23 H 1.09002 * 109.46660 * 59.99864 * 1 2 3 24 24 H 1.08998 * 109.47369 * 239.99971 * 2 1 3 25 25 H 1.08997 * 109.46638 * 119.99410 * 2 1 3 26 26 H 1.09001 * 109.46792 * 300.00023 * 3 2 1 27 27 H 1.08998 * 109.47003 * 59.99747 * 3 2 1 28 28 H 1.00895 * 111.00037 * 303.94767 * 4 3 2 29 29 H 1.08999 * 109.47256 * 295.30746 * 5 4 3 30 30 H 1.09006 * 109.47136 * 55.31077 * 5 4 3 31 31 H 1.09000 * 109.49901 * 294.37084 * 8 6 5 32 32 H 1.08998 * 109.49583 * 54.43760 * 8 6 5 33 33 H 1.09000 * 109.46315 * 58.65734 * 9 8 6 34 34 H 1.09007 * 109.45895 * 178.61671 * 9 8 6 35 35 H 1.09001 * 109.49608 * 181.32024 * 10 9 8 36 36 H 1.08996 * 109.49858 * 301.41258 * 10 9 8 37 37 H 1.09003 * 109.59024 * 65.15143 * 11 10 9 38 38 H 1.08999 * 109.58892 * 185.58015 * 11 10 9 39 39 H 0.96997 * 119.99895 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0355 2.8139 0.0000 6 6 5.5603 2.7749 0.1187 7 1 5.8432 2.2180 1.0120 8 6 6.1546 2.0960 -1.1193 9 6 7.6813 2.1839 -1.0609 10 6 8.1098 3.6531 -1.0632 11 6 7.5378 4.3497 0.1754 12 7 6.0828 4.1453 0.2068 13 6 5.2302 5.2116 0.3121 14 1 4.2601 5.1762 -0.1613 15 6 5.6125 6.3381 1.0275 16 7 6.6936 6.3056 1.7776 17 14 4.5929 7.8999 0.9257 18 1 3.5546 7.8833 1.9872 19 1 5.4746 9.0799 1.1142 20 1 3.9390 7.9782 -0.4052 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.8702 0.9166 0.7822 29 1 3.7560 3.3100 -0.9294 30 1 3.6193 3.3632 0.8446 31 1 5.8511 1.0493 -1.1412 32 1 5.7949 2.5980 -2.0174 33 1 8.0383 1.7030 -0.1502 34 1 8.1075 1.6800 -1.9285 35 1 9.1980 3.7148 -1.0453 36 1 7.7322 4.1409 -1.9619 37 1 7.9840 3.9226 1.0736 38 1 7.7561 5.4165 0.1282 39 1 6.9611 7.0928 2.2772 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:28 Heat of formation + Delta-G solvation = -1.777211 kcal Electronic energy + Delta-G solvation = -16416.416963 eV Core-core repulsion = 13972.489352 eV Total energy + Delta-G solvation = -2443.927610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.95421 -36.09426 -33.00870 -32.98120 -30.40104 -29.55266 -26.11032 -24.95703 -23.34034 -21.89774 -21.24227 -20.21072 -18.95954 -16.49041 -15.58593 -15.27139 -14.43940 -14.16972 -13.87218 -13.84943 -13.24528 -12.96598 -12.91130 -12.35856 -12.27284 -12.09149 -11.58715 -11.28313 -11.13147 -10.87063 -10.76771 -10.67355 -10.57355 -10.36382 -10.12880 -9.95432 -9.85605 -9.31233 -9.20072 -8.44330 -7.95199 -6.52300 -5.74341 -3.22049 3.37162 3.44285 3.46031 4.42470 4.57663 5.03749 5.14362 5.39707 5.40252 5.54634 5.66770 5.74016 5.79095 5.83847 5.84796 5.89328 6.01262 6.09122 6.16466 6.28969 6.32149 6.40080 6.52043 6.56167 6.72826 6.82723 6.87002 6.94422 7.02199 7.20948 7.45967 7.52635 7.73653 7.79821 7.85424 8.52800 9.26872 9.89776 10.49113 11.33496 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.008478 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.600980 B = 3301.719326 C = 4468.536807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.692 5.692 5 C 0.069 3.931 6 C 0.178 3.822 7 H 0.020 0.980 8 C -0.118 4.118 9 C -0.111 4.111 10 C -0.144 4.144 11 C 0.175 3.825 12 N -0.588 5.588 13 C -0.250 4.250 14 H 0.064 0.936 15 C 0.004 3.996 16 N -0.904 5.904 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.279 1.279 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.334 0.666 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.084 0.916 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 -9.751 -3.623 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.071 4.071 4 N -0.323 5.323 5 C -0.060 4.060 6 C 0.071 3.929 7 H 0.037 0.963 8 C -0.157 4.157 9 C -0.149 4.149 10 C -0.183 4.183 11 C 0.049 3.951 12 N -0.312 5.312 13 C -0.380 4.380 14 H 0.082 0.918 15 C -0.194 4.194 16 N -0.548 5.548 17 Si 0.730 3.270 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.102 0.898 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.270 -9.656 -4.200 11.775 hybrid contribution -0.627 1.196 0.964 1.659 sum -5.896 -8.460 -3.236 10.808 Atomic orbital electron populations 1.21731 0.95978 1.01347 1.01778 1.21504 0.95201 0.96948 1.02288 1.21948 0.88596 0.96158 1.00360 1.60541 1.06440 1.15843 1.49448 1.22058 0.95641 0.87104 1.01159 1.20350 0.90796 0.87457 0.94293 0.96271 1.21890 0.94637 0.99639 0.99524 1.21430 0.96644 0.97076 0.99758 1.22194 0.98497 0.95855 1.01743 1.20745 0.82722 1.00162 0.91437 1.44009 1.01800 0.99802 1.85621 1.19105 0.99197 0.93908 1.25817 0.91811 1.25170 0.98025 0.99624 0.96596 1.69992 1.25711 1.28705 1.30395 0.86341 0.79564 0.83328 0.77817 1.21474 1.21567 1.20474 0.92862 0.92921 0.92724 0.91323 0.92375 0.91401 0.95638 0.84925 0.91271 0.94126 0.92493 0.92842 0.93174 0.94067 0.93727 0.92968 0.96632 0.89778 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.36 6.19 -26.73 -0.17 -1.53 16 3 C 0.06 0.82 5.68 -3.82 -0.02 0.79 16 4 N -0.69 -10.98 6.07 -113.78 -0.69 -11.67 16 5 C 0.07 1.35 3.88 -3.82 -0.01 1.33 16 6 C 0.18 3.79 3.06 -67.60 -0.21 3.59 16 7 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 8 C -0.12 -2.22 5.18 -26.61 -0.14 -2.35 16 9 C -0.11 -2.03 5.88 -26.69 -0.16 -2.19 16 10 C -0.14 -2.90 6.08 -26.61 -0.16 -3.06 16 11 C 0.17 4.29 5.24 -3.69 -0.02 4.28 16 12 N -0.59 -14.85 2.99 -164.75 -0.49 -15.34 16 13 C -0.25 -6.81 8.45 -15.06 -0.13 -6.94 16 14 H 0.06 1.70 6.36 -52.49 -0.33 1.37 16 15 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 16 N -0.90 -26.37 11.13 55.49 0.62 -25.75 16 17 Si 0.90 21.80 29.57 -169.99 -5.03 16.77 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.33 5.02 8.67 -39.29 -0.34 4.68 16 29 H 0.07 1.43 7.64 -51.93 -0.40 1.03 16 30 H 0.04 0.88 7.42 -51.93 -0.39 0.49 16 31 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 2.29 6.19 -51.93 -0.32 1.97 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -28.46 302.16 -9.01 -37.47 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.24 Total: 1.09 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.73 Total: -7.13 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.56 Total: -52.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.46 -9.01 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.695 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds