Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 N 1.46900 * 109.47107 * 119.99784 * 2 1 3 5 5 C 1.46901 * 111.00411 * 154.99850 * 4 2 1 6 6 C 1.52993 * 109.47662 * 180.02562 * 5 4 2 7 7 H 1.09005 * 109.58590 * 299.12070 * 6 5 4 8 8 C 1.53192 * 109.58864 * 178.69266 * 6 5 4 9 9 C 1.53043 * 109.31136 * 185.57323 * 8 6 5 10 10 C 1.53046 * 109.53424 * 61.36571 * 9 8 6 11 11 C 1.53190 * 109.31595 * 298.63126 * 10 9 8 12 12 N 1.46925 * 109.58794 * 59.39731 * 6 5 4 13 13 C 1.36938 * 120.62768 * 353.38184 * 12 6 5 14 14 H 1.07996 * 120.00293 * 31.74036 * 13 12 6 15 15 C 1.38818 * 119.99665 * 211.73873 * 13 12 6 16 16 N 1.31618 * 119.99818 * 12.34653 * 15 13 12 17 17 Si 1.86796 * 119.99860 * 192.34766 * 15 13 12 18 18 H 1.48498 * 109.47407 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47231 * 120.00406 * 17 15 13 20 20 H 1.48504 * 109.46832 * 239.99989 * 17 15 13 21 21 H 1.08995 * 109.47028 * 59.99839 * 1 2 3 22 22 H 1.08995 * 109.47214 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47052 * 300.00123 * 1 2 3 24 24 H 1.08995 * 109.47146 * 239.99601 * 2 1 3 25 25 H 1.09005 * 109.46654 * 300.00135 * 3 2 1 26 26 H 1.09005 * 109.46768 * 59.99471 * 3 2 1 27 27 H 1.08992 * 109.47482 * 179.97438 * 3 2 1 28 28 H 1.00895 * 111.00411 * 278.95521 * 4 2 1 29 29 H 1.08998 * 109.46805 * 300.00347 * 5 4 2 30 30 H 1.09003 * 109.46967 * 59.99894 * 5 4 2 31 31 H 1.09001 * 109.49739 * 305.52542 * 8 6 5 32 32 H 1.09002 * 109.49666 * 65.62335 * 8 6 5 33 33 H 1.08994 * 109.46294 * 301.34452 * 9 8 6 34 34 H 1.08999 * 109.45613 * 181.38125 * 9 8 6 35 35 H 1.09000 * 109.49275 * 178.67915 * 10 9 8 36 36 H 1.09001 * 109.49479 * 58.58606 * 10 9 8 37 37 H 1.08999 * 109.58551 * 294.84954 * 11 10 9 38 38 H 1.08992 * 109.58809 * 174.42469 * 11 10 9 39 39 H 0.97000 * 120.00045 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3670 -1.2355 0.9808 6 6 3.8417 -1.9482 2.2487 7 1 3.8812 -1.2376 3.0743 8 6 5.2333 -2.5436 2.0127 9 6 5.6431 -3.3715 3.2329 10 6 4.6522 -4.5215 3.4273 11 6 3.2540 -3.9485 3.6793 12 7 2.9115 -3.0363 2.5796 13 6 1.7474 -3.1970 1.8767 14 1 1.7056 -2.9264 0.8320 15 6 0.6209 -3.7078 2.5070 16 7 0.5902 -3.8097 3.8188 17 14 -0.8512 -4.2504 1.4932 18 1 -0.5667 -4.0336 0.0519 19 1 -1.1145 -5.6918 1.7350 20 1 -2.0429 -3.4567 1.8869 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 2.0020 -0.0816 2.0023 29 1 3.3430 -1.9444 0.1532 30 1 4.0523 -0.4220 0.7426 31 1 5.2105 -3.1830 1.1302 32 1 5.9524 -1.7387 1.8609 33 1 5.6417 -2.7372 4.1192 34 1 6.6432 -3.7762 3.0778 35 1 4.9579 -5.1244 4.2824 36 1 4.6350 -5.1422 2.5315 37 1 3.2476 -3.4024 4.6226 38 1 2.5282 -4.7606 3.7200 39 1 -0.1967 -4.1670 4.2593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082646292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = 14.468434 kcal Electronic energy + Delta-G solvation = -17088.090571 eV Core-core repulsion = 14644.867425 eV Total energy + Delta-G solvation = -2443.223146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.04015 -36.24078 -32.82139 -32.09511 -29.63870 -28.92716 -26.76265 -25.26353 -23.76157 -21.90989 -20.41146 -20.20807 -18.88109 -16.20181 -15.49531 -14.83445 -14.33605 -13.87695 -13.78856 -13.29625 -13.06393 -13.02242 -12.58677 -12.19672 -12.06803 -11.86200 -11.48555 -11.24113 -10.97693 -10.78451 -10.62135 -10.53225 -10.40201 -10.22388 -10.05635 -9.95131 -9.73641 -9.31124 -9.09891 -8.21873 -7.36291 -6.27725 -5.45132 -2.86934 3.54080 3.61545 3.63167 4.72704 4.82744 5.29225 5.42041 5.48397 5.59738 5.68349 5.74837 5.76232 5.89034 5.94847 6.06317 6.10945 6.16344 6.21951 6.27769 6.31122 6.43625 6.46687 6.50234 6.58283 6.67890 6.83199 6.84710 6.87335 6.99728 7.17125 7.56502 7.84567 7.90572 8.19636 8.25716 8.77759 9.54929 10.14448 10.71089 11.65745 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.014261 C = 0.008498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.102891 B = 1962.952096 C = 3294.070056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 C -0.181 4.181 4 N -0.642 5.642 5 C 0.076 3.924 6 C 0.172 3.828 7 H 0.019 0.981 8 C -0.128 4.128 9 C -0.107 4.107 10 C -0.144 4.144 11 C 0.173 3.827 12 N -0.581 5.581 13 C -0.187 4.187 14 H 0.076 0.924 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.299 1.299 20 H -0.296 1.296 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.334 0.666 29 H 0.067 0.933 30 H 0.009 0.991 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.013 0.987 38 H 0.086 0.914 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 5.897 -5.009 9.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.032 4.032 3 C -0.240 4.240 4 N -0.271 5.271 5 C -0.053 4.053 6 C 0.064 3.936 7 H 0.036 0.964 8 C -0.168 4.168 9 C -0.145 4.145 10 C -0.183 4.183 11 C 0.048 3.952 12 N -0.304 5.304 13 C -0.317 4.317 14 H 0.093 0.907 15 C -0.202 4.202 16 N -0.568 5.568 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.226 1.226 20 H -0.223 1.223 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.104 0.896 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.578 5.249 -5.092 9.197 hybrid contribution -0.299 0.622 -0.333 0.766 sum 5.279 5.871 -5.424 9.579 Atomic orbital electron populations 1.21721 0.95012 1.02510 1.00134 1.21533 0.95771 0.91202 0.94677 1.22570 1.00763 0.99094 1.01603 1.60679 1.24176 1.38714 1.03526 1.21921 0.88228 0.96284 0.98888 1.20488 0.89167 0.90195 0.93724 0.96362 1.21995 0.97951 0.98681 0.98207 1.21363 0.97480 0.97762 0.97893 1.22210 0.99148 0.96987 0.99956 1.20743 0.91144 0.94105 0.89245 1.44089 1.19941 1.27957 1.38389 1.19184 0.86244 1.33907 0.92405 0.90690 1.24979 0.96691 1.03610 0.94920 1.69999 1.28559 1.51547 1.06733 0.86327 0.83868 0.77457 0.79744 1.20637 1.22650 1.22348 0.93755 0.91703 0.93016 0.91379 0.92947 0.92781 0.93289 0.84806 0.91431 0.97266 0.92400 0.93725 0.93086 0.94065 0.93742 0.92933 0.96841 0.89607 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.52 37.16 0.35 -1.85 16 2 C 0.08 1.26 3.20 -67.71 -0.22 1.05 16 3 C -0.18 -2.39 9.16 37.16 0.34 -2.05 16 4 N -0.64 -12.24 3.83 -106.73 -0.41 -12.65 16 5 C 0.08 1.41 4.24 -3.83 -0.02 1.40 16 6 C 0.17 3.52 3.13 -67.60 -0.21 3.30 16 7 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 8 C -0.13 -2.28 5.37 -26.61 -0.14 -2.42 16 9 C -0.11 -1.88 5.88 -26.69 -0.16 -2.04 16 10 C -0.14 -2.84 6.08 -26.61 -0.16 -3.00 16 11 C 0.17 4.20 5.25 -3.71 -0.02 4.19 16 12 N -0.58 -14.21 2.98 -164.78 -0.49 -14.71 16 13 C -0.19 -4.98 7.51 -15.06 -0.11 -5.09 16 14 H 0.08 2.00 5.88 -52.49 -0.31 1.70 16 15 C -0.01 -0.19 5.00 -17.43 -0.09 -0.28 16 16 N -0.92 -27.28 11.18 55.49 0.62 -26.66 16 17 Si 0.89 22.60 29.57 -169.99 -5.03 17.58 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.07 1.10 7.80 -51.93 -0.40 0.69 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.71 8.13 -51.93 -0.42 0.28 16 27 H 0.05 0.63 7.45 -51.93 -0.39 0.25 16 28 H 0.33 6.40 8.47 -39.29 -0.33 6.06 16 29 H 0.07 1.33 7.38 -51.93 -0.38 0.94 16 30 H 0.01 0.15 7.44 -51.93 -0.39 -0.23 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 2.34 6.19 -51.93 -0.32 2.02 16 39 H 0.24 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 297.99 15.07 4.49 4.49 Total: -1.00 -28.77 297.99 -8.40 -37.18 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.15 Total: 1.56 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.43 Total: -6.79 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.28 Total: -54.01 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.77 -8.40 -37.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082646292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.644 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds