Wall clock time and date at job start Mon Mar 30 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.50803 * 2 1 4 4 C 1.53036 * 109.50513 * 239.91657 * 2 1 3 5 5 N 1.46849 * 109.52274 * 180.83830 * 4 2 1 6 6 C 1.46910 * 110.99768 * 185.84106 * 5 4 2 7 7 C 1.53001 * 109.46982 * 169.74725 * 6 5 4 8 8 C 1.52999 * 109.47235 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47357 * 179.97438 * 8 7 6 10 10 H 1.08009 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00162 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99981 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00087 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46982 * 59.99936 * 13 11 9 15 15 H 1.48496 * 109.46971 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47103 * 300.00344 * 13 11 9 17 17 C 1.46842 * 111.20050 * 61.74759 * 5 4 2 18 18 C 1.53039 * 109.52266 * 298.25785 * 17 5 4 19 19 C 1.53123 * 109.31189 * 59.15550 * 18 17 5 20 20 H 1.08995 * 109.52240 * 182.46183 * 19 18 17 21 21 N 1.46904 * 109.52020 * 62.27121 * 19 18 17 22 22 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47449 * 300.08038 * 1 2 3 24 24 H 1.08996 * 109.47321 * 60.08273 * 1 2 3 25 25 H 1.09001 * 109.45883 * 60.82720 * 4 2 1 26 26 H 1.09002 * 109.45657 * 300.85142 * 4 2 1 27 27 H 1.08999 * 109.47041 * 289.74658 * 6 5 4 28 28 H 1.08994 * 109.46712 * 49.74897 * 6 5 4 29 29 H 1.09001 * 109.46721 * 300.00112 * 7 6 5 30 30 H 1.09004 * 109.47095 * 59.99745 * 7 6 5 31 31 H 1.08995 * 109.47271 * 300.00470 * 8 7 6 32 32 H 1.09005 * 109.46724 * 59.99701 * 8 7 6 33 33 H 0.97001 * 119.99642 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.46659 * 178.23678 * 17 5 4 35 35 H 1.09002 * 109.45412 * 58.25964 * 17 5 4 36 36 H 1.09002 * 109.50563 * 179.11883 * 18 17 5 37 37 H 1.09003 * 109.50107 * 299.19864 * 18 17 5 38 38 H 1.00900 * 110.99551 * 60.00293 * 21 19 18 39 39 H 1.00900 * 110.99832 * 183.95283 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2482 5 7 3.5093 -0.7409 -1.2385 6 6 4.0372 -1.3043 -2.4883 7 6 5.5485 -1.0747 -2.5529 8 6 6.0985 -1.6620 -3.8542 9 6 7.5869 -1.4354 -3.9181 10 1 8.0904 -0.9239 -3.1110 11 6 8.3060 -1.8808 -5.0069 12 7 7.6928 -2.5032 -5.9899 13 14 10.1512 -1.6005 -5.0857 14 1 10.8028 -2.2657 -3.9289 15 1 10.6847 -2.1694 -6.3494 16 1 10.4327 -0.1431 -5.0417 17 6 4.0238 -1.4715 -0.0733 18 6 3.5720 -0.7709 1.2101 19 6 2.0420 -0.7228 1.2491 20 1 1.7171 -0.1859 2.1402 21 7 1.5084 -2.0912 1.2769 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5151 0.8892 24 1 -0.3634 0.5125 -0.8907 25 1 1.6899 -0.2020 -2.1390 26 1 1.6653 -1.7463 -1.2544 27 1 3.8305 -2.3740 -2.5205 28 1 3.5589 -0.8161 -3.3374 29 1 5.7551 -0.0049 -2.5207 30 1 6.0268 -1.5629 -1.7037 31 1 5.8917 -2.7317 -3.8860 32 1 5.6202 -1.1742 -4.7036 33 1 8.1988 -2.8169 -6.7557 34 1 5.1129 -1.4942 -0.1107 35 1 3.6387 -2.4912 -0.0852 36 1 3.9409 -1.3223 2.0749 37 1 3.9686 0.2442 1.2294 38 1 1.8368 -2.5908 2.0897 39 1 0.5002 -2.0870 1.2379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086886677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:17 Heat of formation + Delta-G solvation = -21.168502 kcal Electronic energy + Delta-G solvation = -16058.515172 eV Core-core repulsion = 13613.746692 eV Total energy + Delta-G solvation = -2444.768480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37887 -35.70703 -33.37060 -32.35682 -31.32786 -29.65170 -26.83273 -25.85618 -23.63167 -22.33881 -21.33762 -19.60825 -18.85356 -16.34793 -16.20653 -15.63104 -14.95810 -14.88879 -14.34899 -14.11263 -13.61562 -13.15397 -13.01341 -12.86462 -12.29181 -12.02230 -11.82781 -11.62705 -11.20853 -11.04839 -10.84184 -10.66987 -10.59772 -10.54176 -10.33361 -10.10920 -9.46299 -9.22668 -8.98980 -8.77613 -8.27011 -7.78219 -5.92733 -3.94472 3.38296 3.42061 3.45062 4.24349 4.47521 4.53714 4.68994 4.81634 4.99383 5.20730 5.42844 5.47934 5.49166 5.59042 5.63386 5.77360 5.80929 5.83955 5.94853 6.02429 6.04967 6.23644 6.27468 6.30030 6.45070 6.47730 6.84144 6.92016 7.04168 7.24703 7.31051 7.58863 7.61316 7.77084 7.93545 8.08619 8.52283 9.12677 9.68999 11.18779 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.055926 B = 0.004709 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.538921 B = 5944.241052 C = 6169.956926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.078 0.922 4 C 0.068 3.932 5 N -0.540 5.540 6 C 0.058 3.942 7 C -0.104 4.104 8 C 0.021 3.979 9 C -0.517 4.517 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.061 3.939 18 C -0.109 4.109 19 C 0.095 3.905 20 H 0.030 0.970 21 N -0.843 5.843 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.338 0.662 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.940 3.151 14.505 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.060 4.060 5 N -0.264 5.264 6 C -0.069 4.069 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.067 4.067 18 C -0.147 4.147 19 C -0.017 4.017 20 H 0.048 0.952 21 N -0.375 5.375 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.150 0.850 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.347 3.454 13.676 19.419 hybrid contribution 0.274 -0.445 0.695 0.870 sum -13.073 3.009 14.371 19.659 Atomic orbital electron populations 1.21820 0.95546 1.01708 1.01615 1.21198 0.94645 0.99700 0.94689 0.90373 1.21955 0.88325 0.99168 0.96571 1.61990 1.06907 1.54565 1.02969 1.22228 0.97783 0.96666 0.90193 1.21645 0.91376 1.00839 1.00323 1.19072 0.95383 0.95853 0.91301 1.21231 0.93223 1.36751 1.04346 0.92778 1.25024 0.98368 0.95337 0.95773 1.69963 1.35778 1.39254 1.08704 0.86668 0.85730 0.78476 0.77174 1.20296 1.21347 1.20257 1.21959 0.99890 0.95519 0.89333 1.21621 0.93922 1.01497 0.97704 1.21379 0.95408 0.88714 0.96166 0.95215 1.58750 1.14199 1.16077 1.48477 0.92399 0.93060 0.92360 0.91800 0.94023 0.95495 0.91556 0.92762 0.93538 0.96860 0.96671 0.93048 0.90715 0.94007 0.92147 0.91006 0.84994 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.82 37.15 0.33 -0.99 16 2 C -0.08 -0.93 2.70 -90.54 -0.24 -1.17 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.07 0.94 4.60 -3.83 -0.02 0.92 16 5 N -0.54 -8.75 4.66 -234.67 -1.09 -9.84 16 6 C 0.06 1.10 4.96 -3.82 -0.02 1.08 16 7 C -0.10 -2.28 5.09 -26.73 -0.14 -2.42 16 8 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 10 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 13 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.06 0.92 5.15 -3.84 -0.02 0.90 16 18 C -0.11 -1.31 5.76 -26.65 -0.15 -1.46 16 19 C 0.09 0.99 3.15 -67.58 -0.21 0.77 16 20 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 21 N -0.84 -8.03 7.89 -4.56 -0.04 -8.07 16 22 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16 26 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 27 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.07 1.24 7.98 -51.93 -0.41 0.83 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.07 1.22 6.22 -51.93 -0.32 0.89 16 35 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.34 2.77 9.04 -39.29 -0.36 2.42 16 39 H 0.34 2.75 6.98 -39.29 -0.27 2.47 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -30.77 300.50 -8.93 -39.70 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.02 Total: -0.72 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.03 Total: -15.83 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.39 Total: -44.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.77 -8.93 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.531 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds