Wall clock time and date at job start Mon Mar 30 2020 03:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.50803 * 2 1 4 4 C 1.53036 * 109.50513 * 239.91657 * 2 1 3 5 5 N 1.46849 * 109.52274 * 180.83830 * 4 2 1 6 6 C 1.46910 * 110.99768 * 185.84106 * 5 4 2 7 7 C 1.53001 * 109.46982 * 169.74725 * 6 5 4 8 8 C 1.52999 * 109.47235 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47357 * 179.97438 * 8 7 6 10 10 H 1.08009 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00162 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99981 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00087 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46982 * 59.99936 * 13 11 9 15 15 H 1.48496 * 109.46971 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47103 * 300.00344 * 13 11 9 17 17 C 1.46842 * 111.20050 * 61.74759 * 5 4 2 18 18 C 1.53039 * 109.52266 * 298.25785 * 17 5 4 19 19 C 1.53123 * 109.31189 * 59.15550 * 18 17 5 20 20 H 1.08995 * 109.52240 * 182.46183 * 19 18 17 21 21 N 1.46904 * 109.52020 * 62.27121 * 19 18 17 22 22 H 1.09001 * 109.46813 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47449 * 300.08038 * 1 2 3 24 24 H 1.08996 * 109.47321 * 60.08273 * 1 2 3 25 25 H 1.09001 * 109.45883 * 60.82720 * 4 2 1 26 26 H 1.09002 * 109.45657 * 300.85142 * 4 2 1 27 27 H 1.08999 * 109.47041 * 289.74658 * 6 5 4 28 28 H 1.08994 * 109.46712 * 49.74897 * 6 5 4 29 29 H 1.09001 * 109.46721 * 300.00112 * 7 6 5 30 30 H 1.09004 * 109.47095 * 59.99745 * 7 6 5 31 31 H 1.08995 * 109.47271 * 300.00470 * 8 7 6 32 32 H 1.09005 * 109.46724 * 59.99701 * 8 7 6 33 33 H 0.97001 * 119.99642 * 180.02562 * 12 11 9 34 34 H 1.08995 * 109.46659 * 178.23678 * 17 5 4 35 35 H 1.09002 * 109.45412 * 58.25964 * 17 5 4 36 36 H 1.09002 * 109.50563 * 179.11883 * 18 17 5 37 37 H 1.09003 * 109.50107 * 299.19864 * 18 17 5 38 38 H 1.00900 * 110.99551 * 60.00293 * 21 19 18 39 39 H 1.00900 * 110.99832 * 183.95283 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2482 5 7 3.5093 -0.7409 -1.2385 6 6 4.0372 -1.3043 -2.4883 7 6 5.5485 -1.0747 -2.5529 8 6 6.0985 -1.6620 -3.8542 9 6 7.5869 -1.4354 -3.9181 10 1 8.0904 -0.9239 -3.1110 11 6 8.3060 -1.8808 -5.0069 12 7 7.6928 -2.5032 -5.9899 13 14 10.1512 -1.6005 -5.0857 14 1 10.8028 -2.2657 -3.9289 15 1 10.6847 -2.1694 -6.3494 16 1 10.4327 -0.1431 -5.0417 17 6 4.0238 -1.4715 -0.0733 18 6 3.5720 -0.7709 1.2101 19 6 2.0420 -0.7228 1.2491 20 1 1.7171 -0.1859 2.1402 21 7 1.5084 -2.0912 1.2769 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5151 0.8892 24 1 -0.3634 0.5125 -0.8907 25 1 1.6899 -0.2020 -2.1390 26 1 1.6653 -1.7463 -1.2544 27 1 3.8305 -2.3740 -2.5205 28 1 3.5589 -0.8161 -3.3374 29 1 5.7551 -0.0049 -2.5207 30 1 6.0268 -1.5629 -1.7037 31 1 5.8917 -2.7317 -3.8860 32 1 5.6202 -1.1742 -4.7036 33 1 8.1988 -2.8169 -6.7557 34 1 5.1129 -1.4942 -0.1107 35 1 3.6387 -2.4912 -0.0852 36 1 3.9409 -1.3223 2.0749 37 1 3.9686 0.2442 1.2294 38 1 1.8368 -2.5908 2.0897 39 1 0.5002 -2.0870 1.2379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086886677.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:17 Heat of formation + Delta-G solvation = -42.434968 kcal Electronic energy + Delta-G solvation = -16059.437355 eV Core-core repulsion = 13613.746692 eV Total energy + Delta-G solvation = -2445.690663 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.44971 -37.07973 -35.32095 -33.30115 -33.10520 -30.80129 -28.45192 -27.02439 -25.28730 -23.43374 -22.93025 -21.28347 -19.79950 -18.47179 -17.11748 -16.83112 -16.45643 -16.29867 -15.90193 -15.38536 -14.99719 -14.40199 -14.04266 -14.03009 -13.73182 -13.66509 -13.22568 -12.92191 -12.70788 -12.57994 -12.47440 -12.22127 -12.11042 -11.73691 -11.66313 -11.40099 -11.33718 -11.07073 -10.94966 -10.53773 -9.58988 -9.04856 -8.19206 -6.30675 1.40118 1.43948 1.51889 2.41790 3.03026 3.13539 3.67480 3.80438 3.91404 4.09359 4.22751 4.26591 4.40848 4.51958 4.58495 4.66829 4.73660 4.79777 4.86161 4.89547 4.93701 5.02333 5.04382 5.12248 5.17639 5.24239 5.26847 5.37521 5.49919 5.53579 5.74796 5.85884 6.17818 6.29108 6.32773 6.35813 6.68606 6.85574 7.38424 8.92743 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.055926 B = 0.004709 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.538921 B = 5944.241052 C = 6169.956926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 H 0.073 0.927 4 C 0.068 3.932 5 N -0.544 5.544 6 C 0.069 3.931 7 C -0.087 4.087 8 C 0.026 3.974 9 C -0.544 4.544 10 H 0.059 0.941 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.281 1.281 16 H -0.266 1.266 17 C 0.061 3.939 18 C -0.105 4.105 19 C 0.099 3.901 20 H 0.050 0.950 21 N -0.853 5.853 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.017 0.983 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.048 0.952 31 H -0.012 1.012 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.346 0.654 39 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.090 3.846 16.133 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.060 4.060 5 N -0.268 5.268 6 C -0.058 4.058 7 C -0.125 4.125 8 C -0.012 4.012 9 C -0.582 4.582 10 H 0.077 0.923 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.067 4.067 18 C -0.144 4.144 19 C -0.012 4.012 20 H 0.067 0.933 21 N -0.386 5.386 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.007 0.993 32 H 0.010 0.990 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.160 0.840 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.518 4.153 15.329 20.856 hybrid contribution 0.286 -0.688 0.171 0.765 sum -13.232 3.465 15.500 20.672 Atomic orbital electron populations 1.21768 0.93494 1.02303 1.02491 1.21190 0.96301 0.98968 0.93521 0.90888 1.22030 0.86489 0.99204 0.98249 1.61980 1.08628 1.54224 1.01980 1.21960 0.95716 0.96230 0.91939 1.21380 0.93497 1.00006 0.97590 1.18969 0.94952 0.94262 0.92976 1.21651 0.94450 1.37199 1.04875 0.92308 1.26006 1.03993 0.94692 0.95154 1.70100 1.38021 1.39980 1.09361 0.85474 0.78891 0.78905 0.77618 1.19129 1.20664 1.19124 1.21969 0.98789 0.95504 0.90407 1.21606 0.95357 1.01087 0.96302 1.21301 0.94099 0.89384 0.96436 0.93264 1.58695 1.15038 1.15661 1.49237 0.91941 0.91357 0.92353 0.92061 0.94706 0.96451 0.91759 0.93038 0.93360 0.99349 0.99032 0.92741 0.92496 0.94862 0.90522 0.91249 0.84022 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.82 71.98 0.63 -1.51 16 2 C -0.08 -1.64 2.70 -10.74 -0.03 -1.67 16 3 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 4 C 0.07 1.83 4.60 86.32 0.40 2.22 16 5 N -0.54 -17.51 4.66 -896.35 -4.17 -21.68 16 6 C 0.07 2.67 4.96 86.30 0.43 3.10 16 7 C -0.09 -3.90 5.09 30.59 0.16 -3.74 16 8 C 0.03 1.45 4.97 29.85 0.15 1.60 16 9 C -0.54 -32.33 9.11 25.60 0.23 -32.10 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 11 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 12 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 13 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 C 0.06 1.81 5.15 86.33 0.44 2.26 16 18 C -0.11 -2.33 5.76 30.65 0.18 -2.15 16 19 C 0.10 1.82 3.15 45.00 0.14 1.96 16 20 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 21 N -0.85 -14.27 7.89 -168.33 -1.33 -15.60 16 22 H 0.06 0.89 6.55 -2.39 -0.02 0.88 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 1.65 8.01 -2.39 -0.02 1.64 16 26 H 0.03 0.99 7.69 -2.39 -0.02 0.97 16 27 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.06 2.47 7.98 -2.39 -0.02 2.45 16 29 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 2.13 6.44 -2.38 -0.02 2.12 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 33 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 34 H 0.06 1.86 6.22 -2.39 -0.01 1.85 16 35 H 0.03 1.04 7.69 -2.39 -0.02 1.02 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.35 4.84 9.04 -89.69 -0.81 4.03 16 39 H 0.35 4.73 6.98 -89.69 -0.63 4.11 16 Total: -1.00 -66.22 300.50 -0.42 -66.64 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -0.42 Total: 11.08 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 3.19 Total: -29.62 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -5.22 Total: -95.53 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.22 -0.42 -66.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086886677.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.207 kcal (2) G-P(sol) polarization free energy of solvation -66.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds