Wall clock time and date at job start Mon Mar 30 2020 03:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.50793 * 2 1 4 4 C 1.53126 * 109.50171 * 239.88504 * 2 1 3 5 5 C 1.53116 * 109.16379 * 182.40598 * 4 2 1 6 6 H 1.09005 * 109.49606 * 297.67583 * 5 4 2 7 7 N 1.46901 * 109.50565 * 177.59843 * 5 4 2 8 8 C 1.53032 * 109.27926 * 57.65237 * 5 4 2 9 9 N 1.46849 * 109.52573 * 300.82144 * 8 5 4 10 10 C 1.46901 * 111.00372 * 185.83873 * 9 8 5 11 11 C 1.53000 * 109.46769 * 45.78950 * 10 9 8 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46616 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47104 * 119.99966 * 17 15 13 20 20 H 1.48489 * 109.47200 * 240.00246 * 17 15 13 21 21 C 1.46852 * 111.19645 * 61.74127 * 9 8 5 22 22 H 1.09007 * 109.46904 * 299.91638 * 1 2 3 23 23 H 1.08998 * 109.47315 * 59.91578 * 1 2 3 24 24 H 1.09002 * 109.47474 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.51967 * 302.31117 * 4 2 1 26 26 H 1.08999 * 109.52189 * 62.43248 * 4 2 1 27 27 H 1.00900 * 110.99683 * 179.97438 * 7 5 4 28 28 H 1.00900 * 110.99626 * 303.94923 * 7 5 4 29 29 H 1.09000 * 109.46531 * 180.80899 * 8 5 4 30 30 H 1.09002 * 109.46278 * 60.84063 * 8 5 4 31 31 H 1.09001 * 109.46874 * 285.79230 * 10 9 8 32 32 H 1.08992 * 109.47407 * 165.79248 * 10 9 8 33 33 H 1.09002 * 109.47398 * 300.00295 * 11 10 9 34 34 H 1.09001 * 109.47194 * 60.00475 * 11 10 9 35 35 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 37 37 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46138 * 58.27279 * 21 9 8 39 39 H 1.09000 * 109.46265 * 178.24512 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7242 -1.2486 5 6 3.5711 -0.7724 -1.2107 6 1 3.9676 0.2427 -1.2307 7 7 4.0674 -1.5160 -2.3763 8 6 4.0229 -1.4731 0.0726 9 7 3.5093 -0.7418 1.2380 10 6 4.0373 -1.3052 2.4877 11 6 5.5425 -1.5400 2.3453 12 6 6.0924 -2.1273 3.6466 13 6 7.5750 -2.3580 3.5067 14 1 8.0752 -2.1100 2.5822 15 6 8.2932 -2.8846 4.5592 16 7 7.6842 -3.1861 5.6853 17 14 10.1309 -3.1712 4.3855 18 1 10.5710 -2.7531 3.0303 19 1 10.8550 -2.3745 5.4084 20 1 10.4275 -4.6131 4.5800 21 6 2.0409 -0.7231 1.2482 22 1 -0.3633 0.5126 0.8908 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6451 -1.7395 -1.2685 26 1 1.7146 -0.1883 -2.1398 27 1 5.0754 -1.5612 -2.3739 28 1 3.6638 -2.4400 -2.4144 29 1 5.1120 -1.4963 0.1096 30 1 3.6374 -2.4926 0.0848 31 1 3.5402 -2.2522 2.6979 32 1 3.8540 -0.6091 3.3061 33 1 5.7259 -2.2361 1.5268 34 1 6.0397 -0.5930 2.1351 35 1 5.9090 -1.4315 4.4654 36 1 5.5952 -3.0743 3.8565 37 1 8.1895 -3.5562 6.4259 38 1 1.6648 -1.7461 1.2548 39 1 1.6906 -0.2016 2.1389 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087042085.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:42 Heat of formation + Delta-G solvation = -45.838671 kcal Electronic energy + Delta-G solvation = -16015.191292 eV Core-core repulsion = 13569.353033 eV Total energy + Delta-G solvation = -2445.838259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51460 -36.89266 -35.32648 -34.94420 -32.80094 -29.44028 -28.57713 -27.48755 -25.68092 -23.29659 -22.62635 -21.13117 -20.78476 -18.52486 -17.08248 -16.76184 -16.44597 -16.36928 -16.03679 -15.37735 -14.91437 -14.70613 -14.33700 -14.02419 -13.76111 -13.57213 -13.27957 -12.90873 -12.87263 -12.71044 -12.44198 -12.31418 -12.13701 -11.72121 -11.55557 -11.48782 -11.41903 -11.24430 -10.99781 -10.58479 -9.71516 -9.30063 -8.22951 -6.34416 1.38431 1.38909 1.52359 2.38768 2.87234 3.10336 3.53854 3.81685 3.89966 4.02751 4.09590 4.20209 4.29750 4.32956 4.52273 4.61940 4.63204 4.69352 4.75592 4.80132 4.88423 4.94135 5.01749 5.07448 5.14308 5.17725 5.30987 5.34510 5.46565 5.50690 5.68234 5.80918 5.99584 6.10045 6.23716 6.27834 6.54509 6.82210 7.35189 8.89320 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042001 B = 0.005108 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.488500 B = 5480.792943 C = 6032.631216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.101 4.101 5 C 0.099 3.901 6 H 0.079 0.921 7 N -0.840 5.840 8 C 0.020 3.980 9 N -0.540 5.540 10 C 0.066 3.934 11 C -0.094 4.094 12 C 0.026 3.974 13 C -0.543 4.543 14 H 0.059 0.941 15 C 0.000 4.000 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.056 3.944 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.347 0.653 28 H 0.343 0.657 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.053 0.947 35 H -0.008 1.008 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.027 0.973 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 4.615 -13.644 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.094 0.906 4 C -0.139 4.139 5 C -0.013 4.013 6 H 0.097 0.903 7 N -0.369 5.369 8 C -0.110 4.110 9 N -0.264 5.264 10 C -0.062 4.062 11 C -0.131 4.131 12 C -0.012 4.012 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.071 4.071 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.011 0.989 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.510 5.608 -13.973 19.576 hybrid contribution 1.160 -1.920 1.415 2.652 sum -11.351 3.689 -12.558 17.324 Atomic orbital electron populations 1.21738 0.93190 1.02131 1.02664 1.21108 0.96391 0.99767 0.92965 0.90612 1.21611 0.93397 1.00728 0.98125 1.21417 0.96014 0.97777 0.86123 0.90312 1.59062 1.13206 1.22962 1.41677 1.23137 1.00511 0.95120 0.92206 1.61990 1.08686 1.53889 1.01836 1.22044 0.95097 0.97037 0.92000 1.21525 0.93734 0.99796 0.98081 1.18972 0.94944 0.94204 0.93084 1.21691 0.94829 1.41905 0.99642 0.92288 1.25996 1.03866 0.95110 0.94840 1.70108 1.37993 1.44695 1.04611 0.85378 0.79000 0.77930 0.78628 1.18571 1.20254 1.20263 1.22264 0.86333 0.98896 0.99634 0.92053 0.91216 0.92690 0.92332 0.90338 0.84025 0.84394 0.91189 0.95999 0.96063 0.91233 0.92966 0.92860 0.98924 0.99275 0.92716 0.95508 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.20 71.98 0.66 -1.46 16 2 C -0.08 -1.64 2.88 -10.74 -0.03 -1.67 16 3 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -1.97 4.83 30.67 0.15 -1.82 16 5 C 0.10 2.24 3.41 44.96 0.15 2.39 16 6 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 7 N -0.84 -16.66 9.26 -168.47 -1.56 -18.22 16 8 C 0.02 0.57 4.42 86.32 0.38 0.95 16 9 N -0.54 -16.29 4.81 -896.36 -4.31 -20.60 16 10 C 0.07 2.39 5.27 86.30 0.46 2.85 16 11 C -0.09 -4.00 4.40 30.59 0.13 -3.86 16 12 C 0.03 1.39 4.97 29.85 0.15 1.53 16 13 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 16 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 17 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.06 1.40 4.71 86.32 0.41 1.80 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.35 6.54 9.04 -89.69 -0.81 5.73 16 28 H 0.34 6.09 8.98 -89.69 -0.81 5.28 16 29 H 0.07 2.16 5.81 -2.39 -0.01 2.14 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 2.17 6.21 -2.39 -0.01 2.15 16 34 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 Total: -1.00 -63.70 305.02 -1.01 -64.71 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.61 Total: 14.77 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 3.15 Total: -30.11 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -5.58 Total: -96.05 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.70 -1.01 -64.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087042085.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.872 kcal (2) G-P(sol) polarization free energy of solvation -63.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds