Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 N 1.46898 * 109.47120 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00004 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.49912 * 35.06268 * 5 4 3 7 7 C 1.53045 * 109.52582 * 155.14273 * 5 4 3 8 8 C 1.53037 * 109.54107 * 181.33317 * 7 5 4 9 9 H 1.08999 * 109.49680 * 58.58650 * 8 7 5 10 10 C 1.52994 * 109.49739 * 178.65409 * 8 7 5 11 11 C 1.53633 * 109.23795 * 298.51082 * 8 7 5 12 12 N 1.46924 * 108.54095 * 54.85838 * 11 8 7 13 13 C 1.36944 * 120.62893 * 126.36733 * 12 11 8 14 14 H 1.07997 * 119.99761 * 332.11125 * 13 12 11 15 15 C 1.38812 * 119.99895 * 152.11339 * 13 12 11 16 16 N 1.31624 * 120.00229 * 334.91908 * 15 13 12 17 17 Si 1.86803 * 119.99914 * 154.91309 * 15 13 12 18 18 H 1.48500 * 109.46767 * 60.00196 * 17 15 13 19 19 H 1.48500 * 109.47091 * 300.00472 * 17 15 13 20 20 H 1.48496 * 109.47123 * 180.02562 * 17 15 13 21 21 C 1.46928 * 118.73984 * 306.08984 * 12 11 8 22 22 H 1.09004 * 109.47223 * 60.00168 * 1 2 3 23 23 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47331 * 300.00148 * 1 2 3 25 25 H 1.08997 * 109.47302 * 240.00388 * 2 1 3 26 26 H 1.08997 * 109.47280 * 119.99452 * 2 1 3 27 27 H 1.09000 * 109.47236 * 59.99794 * 3 2 1 28 28 H 1.08998 * 109.47428 * 299.99926 * 3 2 1 29 29 H 1.00899 * 110.99967 * 56.04230 * 4 3 2 30 30 H 1.08998 * 109.45735 * 301.35572 * 7 5 4 31 31 H 1.09005 * 109.45778 * 61.31150 * 7 5 4 32 32 H 1.08998 * 109.47467 * 60.00224 * 10 8 7 33 33 H 1.09010 * 109.47041 * 179.97438 * 10 8 7 34 34 H 1.09002 * 109.47139 * 299.99617 * 10 8 7 35 35 H 1.08991 * 109.73996 * 295.11746 * 11 8 7 36 36 H 1.09004 * 109.66167 * 174.54349 * 11 8 7 37 37 H 0.96997 * 119.99423 * 354.25437 * 16 15 13 38 38 H 1.08998 * 109.58391 * 173.65107 * 21 12 11 39 39 H 1.08997 * 109.58535 * 294.07339 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 1 3.3808 3.4547 0.5909 7 6 5.4408 2.8222 0.6057 8 6 5.9763 4.2555 0.6370 9 1 5.3035 4.8826 1.2220 10 6 7.3676 4.2669 1.2734 11 6 6.0660 4.7938 -0.7991 12 7 4.7476 4.6564 -1.4327 13 6 4.1360 5.7360 -2.0122 14 1 4.3454 6.7325 -1.6526 15 6 3.2470 5.5493 -3.0618 16 7 3.3404 4.4781 -3.8209 17 14 1.9179 6.8185 -3.3969 18 1 2.5489 8.1303 -3.6902 19 1 1.0429 6.9457 -2.2038 20 1 1.1050 6.3879 -4.5627 21 6 4.1005 3.3373 -1.4383 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.8702 0.9165 -0.7822 30 1 5.4010 2.4272 1.6208 31 1 6.1008 2.2010 0.0002 32 1 8.0404 3.6407 0.6875 33 1 7.7489 5.2880 1.2951 34 1 7.3051 3.8805 2.2907 35 1 6.8033 4.2211 -1.3615 36 1 6.3541 5.8449 -0.7794 37 1 4.0795 3.8615 -3.7006 38 1 3.0915 3.4270 -1.8406 39 1 4.6808 2.6482 -2.0519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108027838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -5.850959 kcal Electronic energy + Delta-G solvation = -16605.709326 eV Core-core repulsion = 14161.605065 eV Total energy + Delta-G solvation = -2444.104261 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.42083 -35.83213 -33.87961 -32.77562 -30.43630 -28.78697 -25.89339 -25.06457 -24.56774 -21.60672 -21.12976 -20.51281 -19.04475 -17.33822 -15.56527 -14.77619 -14.55481 -14.35316 -13.97954 -13.80137 -13.54238 -13.28184 -12.79333 -12.32590 -12.14031 -11.93847 -11.69223 -11.57779 -11.25771 -11.02804 -10.82917 -10.66007 -10.59821 -10.36303 -10.11499 -10.06665 -9.94548 -9.68387 -9.40351 -8.37293 -7.98607 -6.84851 -6.07184 -3.23700 3.47878 3.50988 3.69036 4.47234 4.60896 5.14911 5.25035 5.25651 5.42610 5.42986 5.49195 5.57404 5.66119 5.79178 5.79895 5.93986 5.97212 6.06964 6.10850 6.16129 6.23162 6.27061 6.32902 6.36902 6.41912 6.45187 6.59941 6.72188 6.81354 6.85273 7.06317 7.13302 7.52852 7.81929 8.00290 8.56312 9.11128 9.84003 10.29289 11.19815 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.011338 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.562550 B = 2468.974611 C = 3997.282152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.057 3.943 4 N -0.687 5.687 5 C 0.065 3.935 6 H 0.070 0.930 7 C -0.088 4.088 8 C -0.110 4.110 9 H 0.065 0.935 10 C -0.140 4.140 11 C 0.153 3.847 12 N -0.597 5.597 13 C -0.348 4.348 14 H 0.056 0.944 15 C -0.025 4.025 16 N -0.916 5.916 17 Si 1.062 2.938 18 H -0.292 1.292 19 H -0.294 1.294 20 H -0.285 1.285 21 C 0.131 3.869 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.335 0.665 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.015 0.985 36 H 0.053 0.947 37 H 0.267 0.733 38 H 0.077 0.923 39 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.178 -5.884 8.381 10.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.073 4.073 4 N -0.317 5.317 5 C -0.046 4.046 6 H 0.089 0.911 7 C -0.126 4.126 8 C -0.131 4.131 9 H 0.084 0.916 10 C -0.198 4.198 11 C 0.027 3.973 12 N -0.321 5.321 13 C -0.477 4.477 14 H 0.074 0.926 15 C -0.227 4.227 16 N -0.556 5.556 17 Si 0.892 3.108 18 H -0.219 1.219 19 H -0.221 1.221 20 H -0.211 1.211 21 C 0.003 3.997 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -1.117 -5.574 8.094 9.891 hybrid contribution 1.207 0.000 0.013 1.207 sum 0.090 -5.574 8.107 9.839 Atomic orbital electron populations 1.21729 0.95891 1.01277 1.01945 1.21491 0.95361 0.96914 1.02064 1.21985 0.88318 0.96219 1.00741 1.60719 1.06982 1.14722 1.49231 1.22203 0.95720 0.87869 0.98782 0.91125 1.21382 0.95618 0.95828 0.99813 1.21718 0.95786 0.96788 0.98822 0.91649 1.21743 0.97149 1.01083 0.99798 1.21056 0.87694 0.98297 0.90258 1.44058 1.15641 1.06329 1.66036 1.19997 1.26434 0.87348 1.13958 0.92589 1.25835 1.02770 1.02229 0.91893 1.70790 1.34002 1.15160 1.35668 0.83564 0.76482 0.74818 0.75949 1.21906 1.22082 1.21079 1.21590 0.98573 0.86846 0.92688 0.92630 0.92912 0.92818 0.92319 0.91612 0.91586 0.94724 0.84805 0.92842 0.92985 0.93133 0.93101 0.93371 0.96681 0.92821 0.92177 0.90518 0.96885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.57 6.19 -26.73 -0.17 -1.73 16 3 C 0.06 0.91 5.49 -3.82 -0.02 0.89 16 4 N -0.69 -11.65 6.25 -106.60 -0.67 -12.32 16 5 C 0.07 1.27 2.62 -67.59 -0.18 1.10 16 6 H 0.07 1.49 7.80 -51.93 -0.41 1.08 16 7 C -0.09 -1.56 4.77 -26.69 -0.13 -1.69 16 8 C -0.11 -1.98 2.88 -90.27 -0.26 -2.24 16 9 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 10 C -0.14 -2.02 9.20 37.15 0.34 -1.68 16 11 C 0.15 3.30 5.83 -3.48 -0.02 3.28 16 12 N -0.60 -15.18 2.85 -172.05 -0.49 -15.67 16 13 C -0.35 -9.85 9.49 -15.06 -0.14 -9.99 16 14 H 0.06 1.59 7.94 -52.49 -0.42 1.17 16 15 C -0.03 -0.73 4.68 -17.43 -0.08 -0.81 16 16 N -0.92 -27.60 12.40 55.49 0.69 -26.91 16 17 Si 1.06 25.49 29.99 -169.99 -5.10 20.39 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.13 3.08 3.95 -3.71 -0.01 3.06 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 28 H 0.03 0.63 7.56 -51.93 -0.39 0.24 16 29 H 0.33 5.57 8.42 -39.29 -0.33 5.24 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 37 H 0.27 8.16 6.72 -40.82 -0.27 7.88 16 38 H 0.08 2.04 5.77 -51.93 -0.30 1.74 16 39 H 0.01 0.32 7.77 -51.93 -0.40 -0.08 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -29.51 303.49 -8.51 -38.03 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.22 Total: 3.11 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -0.30 Total: -11.20 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.47 Total: -54.91 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.10 Total: 20.39 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.51 -8.51 -38.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.177 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds