Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 N 1.46898 * 109.47120 * 180.02562 * 3 2 1 5 5 C 1.46898 * 111.00004 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.49912 * 35.06268 * 5 4 3 7 7 C 1.53045 * 109.52582 * 155.14273 * 5 4 3 8 8 C 1.53037 * 109.54107 * 181.33317 * 7 5 4 9 9 H 1.08999 * 109.49680 * 58.58650 * 8 7 5 10 10 C 1.52994 * 109.49739 * 178.65409 * 8 7 5 11 11 C 1.53633 * 109.23795 * 298.51082 * 8 7 5 12 12 N 1.46924 * 108.54095 * 54.85838 * 11 8 7 13 13 C 1.36944 * 120.62893 * 126.36733 * 12 11 8 14 14 H 1.07997 * 119.99761 * 332.11125 * 13 12 11 15 15 C 1.38812 * 119.99895 * 152.11339 * 13 12 11 16 16 N 1.31624 * 120.00229 * 334.91908 * 15 13 12 17 17 Si 1.86803 * 119.99914 * 154.91309 * 15 13 12 18 18 H 1.48500 * 109.46767 * 60.00196 * 17 15 13 19 19 H 1.48500 * 109.47091 * 300.00472 * 17 15 13 20 20 H 1.48496 * 109.47123 * 180.02562 * 17 15 13 21 21 C 1.46928 * 118.73984 * 306.08984 * 12 11 8 22 22 H 1.09004 * 109.47223 * 60.00168 * 1 2 3 23 23 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47331 * 300.00148 * 1 2 3 25 25 H 1.08997 * 109.47302 * 240.00388 * 2 1 3 26 26 H 1.08997 * 109.47280 * 119.99452 * 2 1 3 27 27 H 1.09000 * 109.47236 * 59.99794 * 3 2 1 28 28 H 1.08998 * 109.47428 * 299.99926 * 3 2 1 29 29 H 1.00899 * 110.99967 * 56.04230 * 4 3 2 30 30 H 1.08998 * 109.45735 * 301.35572 * 7 5 4 31 31 H 1.09005 * 109.45778 * 61.31150 * 7 5 4 32 32 H 1.08998 * 109.47467 * 60.00224 * 10 8 7 33 33 H 1.09010 * 109.47041 * 179.97438 * 10 8 7 34 34 H 1.09002 * 109.47139 * 299.99617 * 10 8 7 35 35 H 1.08991 * 109.73996 * 295.11746 * 11 8 7 36 36 H 1.09004 * 109.66167 * 174.54349 * 11 8 7 37 37 H 0.96997 * 119.99423 * 354.25437 * 16 15 13 38 38 H 1.08998 * 109.58391 * 173.65107 * 21 12 11 39 39 H 1.08997 * 109.58535 * 294.07339 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 1 3.3808 3.4547 0.5909 7 6 5.4408 2.8222 0.6057 8 6 5.9763 4.2555 0.6370 9 1 5.3035 4.8826 1.2220 10 6 7.3676 4.2669 1.2734 11 6 6.0660 4.7938 -0.7991 12 7 4.7476 4.6564 -1.4327 13 6 4.1360 5.7360 -2.0122 14 1 4.3454 6.7325 -1.6526 15 6 3.2470 5.5493 -3.0618 16 7 3.3404 4.4781 -3.8209 17 14 1.9179 6.8185 -3.3969 18 1 2.5489 8.1303 -3.6902 19 1 1.0429 6.9457 -2.2038 20 1 1.1050 6.3879 -4.5627 21 6 4.1005 3.3373 -1.4383 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 3.8702 0.9165 -0.7822 30 1 5.4010 2.4272 1.6208 31 1 6.1008 2.2010 0.0002 32 1 8.0404 3.6407 0.6875 33 1 7.7489 5.2880 1.2951 34 1 7.3051 3.8805 2.2907 35 1 6.8033 4.2211 -1.3615 36 1 6.3541 5.8449 -0.7794 37 1 4.0795 3.8615 -3.7006 38 1 3.0915 3.4270 -1.8406 39 1 4.6808 2.6482 -2.0519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108027838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -24.197001 kcal Electronic energy + Delta-G solvation = -16606.504870 eV Core-core repulsion = 14161.605065 eV Total energy + Delta-G solvation = -2444.899805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08528 -37.26243 -35.73512 -34.05595 -32.40648 -30.22941 -27.42496 -27.07948 -25.82683 -23.47745 -22.35936 -22.05432 -20.64777 -19.43180 -17.03030 -16.33580 -16.12651 -15.96484 -15.53895 -15.52562 -15.38589 -14.64622 -14.12607 -13.98272 -13.44984 -13.33597 -13.23453 -12.85844 -12.76173 -12.67892 -12.46451 -12.08629 -11.99595 -11.94688 -11.78526 -11.66023 -11.57492 -11.33488 -11.21272 -10.49913 -9.55845 -8.92533 -8.28564 -5.45765 1.52492 1.59889 1.78861 2.59696 3.03745 3.19435 3.59462 3.88614 4.04030 4.05360 4.09875 4.15474 4.24415 4.39344 4.47556 4.62465 4.68988 4.73798 4.75726 4.79017 4.87158 4.92523 4.96885 5.02600 5.11758 5.14435 5.18408 5.27336 5.33132 5.36959 5.39311 5.56056 5.77087 6.02485 6.32336 6.37908 7.00201 7.72242 8.16961 8.93016 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.011338 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.562550 B = 2468.974611 C = 3997.282152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.057 3.943 4 N -0.673 5.673 5 C 0.079 3.921 6 H 0.055 0.945 7 C -0.081 4.081 8 C -0.101 4.101 9 H 0.055 0.945 10 C -0.132 4.132 11 C 0.148 3.852 12 N -0.617 5.617 13 C -0.358 4.358 14 H 0.051 0.949 15 C -0.076 4.076 16 N -0.940 5.940 17 Si 1.111 2.889 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.143 3.857 22 H 0.043 0.957 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.004 0.996 29 H 0.338 0.662 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.013 0.987 36 H 0.047 0.953 37 H 0.252 0.748 38 H 0.039 0.961 39 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 -6.365 10.148 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.073 4.073 4 N -0.303 5.303 5 C -0.033 4.033 6 H 0.073 0.927 7 C -0.119 4.119 8 C -0.122 4.122 9 H 0.074 0.926 10 C -0.189 4.189 11 C 0.023 3.977 12 N -0.341 5.341 13 C -0.487 4.487 14 H 0.069 0.931 15 C -0.272 4.272 16 N -0.582 5.582 17 Si 0.935 3.065 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.216 1.216 21 C 0.016 3.984 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.023 0.977 29 H 0.155 0.845 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.031 0.969 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -0.897 -6.063 9.893 11.638 hybrid contribution 1.188 0.146 -0.542 1.314 sum 0.291 -5.918 9.351 11.070 Atomic orbital electron populations 1.21722 0.94668 1.02560 1.01692 1.21440 0.96371 0.94522 1.02668 1.22053 0.87625 0.98252 0.99325 1.60812 1.07604 1.12849 1.49002 1.21973 0.97086 0.88711 0.95523 0.92692 1.21344 0.93899 0.95796 1.00853 1.21596 0.98095 0.96420 0.96064 0.92622 1.21675 0.94501 1.02034 1.00725 1.21233 0.85827 0.98266 0.92353 1.44335 1.17301 1.06232 1.66275 1.20252 1.26623 0.88122 1.13736 0.93146 1.27200 1.04765 1.03401 0.91863 1.70912 1.33939 1.16137 1.37174 0.82911 0.74191 0.73400 0.75949 1.19871 1.20707 1.21629 1.21439 0.95894 0.86111 0.95005 0.93749 0.90850 0.92260 0.92242 0.90368 0.91450 0.97745 0.84459 0.90513 0.92701 0.92473 0.92338 0.91092 0.96860 0.93441 0.93861 0.94292 0.98335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.11 -2.76 6.19 30.60 0.19 -2.57 16 3 C 0.06 1.81 5.49 86.30 0.47 2.28 16 4 N -0.67 -22.39 6.25 -491.17 -3.07 -25.46 16 5 C 0.08 3.05 2.62 44.99 0.12 3.17 16 6 H 0.05 2.32 7.80 -2.38 -0.02 2.30 16 7 C -0.08 -2.70 4.77 30.62 0.15 -2.56 16 8 C -0.10 -3.47 2.88 -10.57 -0.03 -3.50 16 9 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 10 C -0.13 -3.40 9.20 71.98 0.66 -2.73 16 11 C 0.15 6.39 5.83 86.51 0.50 6.90 16 12 N -0.62 -32.08 2.85 -698.26 -1.99 -34.07 16 13 C -0.36 -20.66 9.49 84.03 0.80 -19.87 16 14 H 0.05 2.91 7.94 -2.91 -0.02 2.89 16 15 C -0.08 -4.44 4.68 84.86 0.40 -4.04 16 16 N -0.94 -58.49 12.40 21.65 0.27 -58.22 16 17 Si 1.11 52.03 29.99 68.60 2.06 54.09 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 C 0.14 6.95 3.95 86.36 0.34 7.29 16 22 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 28 H 0.00 0.16 7.56 -2.39 -0.02 0.14 16 29 H 0.34 11.09 8.42 -89.69 -0.76 10.34 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 37 H 0.25 16.03 6.72 -92.71 -0.62 15.41 16 38 H 0.04 2.17 5.77 -2.39 -0.01 2.16 16 39 H 0.00 -0.06 7.77 -2.39 -0.02 -0.08 16 Total: -1.00 -64.77 303.49 1.96 -62.81 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.38 Total: 18.97 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.31 Total: -18.12 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.79 Total: -117.75 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.06 Total: 54.09 kcal Total: -64.77 1.96 -62.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108027838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.618 kcal (2) G-P(sol) polarization free energy of solvation -64.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds