Wall clock time and date at job start Mon Mar 30 2020 03:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47834 * 2 1 4 4 C 1.50698 * 109.46942 * 239.99372 * 2 1 3 5 5 H 1.07998 * 120.00280 * 240.00477 * 4 2 1 6 6 C 1.37874 * 119.99819 * 60.00381 * 4 2 1 7 7 N 1.31512 * 120.00057 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47050 * 60.00223 * 8 6 4 10 10 H 1.48495 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47485 * 300.00359 * 8 6 4 12 12 N 1.46901 * 109.47033 * 120.00036 * 2 1 3 13 13 C 1.46896 * 111.00171 * 207.01739 * 12 2 1 14 14 H 1.09005 * 109.57406 * 327.00981 * 13 12 2 15 15 C 1.53126 * 109.55756 * 87.14710 * 13 12 2 16 16 C 1.53036 * 109.30939 * 177.51794 * 15 13 12 17 17 N 1.46840 * 109.52837 * 300.84403 * 16 15 13 18 18 C 1.46905 * 111.00377 * 185.83791 * 17 16 15 19 19 C 1.46849 * 111.19651 * 61.74303 * 17 16 15 20 20 C 1.53038 * 109.52059 * 298.25574 * 19 17 16 21 21 H 1.08998 * 109.50471 * 299.20059 * 20 19 17 22 22 C 1.53001 * 109.50114 * 179.12145 * 20 19 17 23 23 H 1.08997 * 109.47493 * 179.91280 * 1 2 3 24 24 H 1.09004 * 109.47147 * 299.91522 * 1 2 3 25 25 H 1.09005 * 109.47010 * 59.90622 * 1 2 3 26 26 H 0.97006 * 119.99897 * 180.02562 * 7 6 4 27 27 H 1.00894 * 111.00282 * 83.06071 * 12 2 1 28 28 H 1.09001 * 109.46593 * 57.58427 * 15 13 12 29 29 H 1.08995 * 109.50652 * 297.48030 * 15 13 12 30 30 H 1.09000 * 109.46132 * 180.82369 * 16 15 13 31 31 H 1.08999 * 109.46332 * 60.86465 * 16 15 13 32 32 H 1.08999 * 109.46760 * 295.79399 * 18 17 16 33 33 H 1.09004 * 109.46738 * 55.78790 * 18 17 16 34 34 H 1.09000 * 109.47043 * 175.78966 * 18 17 16 35 35 H 1.08998 * 109.46291 * 178.24393 * 19 17 16 36 36 H 1.08994 * 109.45426 * 58.26995 * 19 17 16 37 37 H 1.08998 * 109.47178 * 60.08151 * 22 20 19 38 38 H 1.09007 * 109.47379 * 300.07919 * 22 20 19 39 39 H 1.09001 * 109.46755 * 180.08287 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8278 -2.5201 -4.0080 10 1 1.8268 -0.4203 -5.2204 11 1 3.8074 -1.1195 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 3.3469 -0.1976 1.5881 14 1 3.9077 0.0828 0.6964 15 6 3.1922 1.0234 2.4991 16 6 4.5758 1.4967 2.9505 17 7 5.2558 0.4111 3.6683 18 6 6.5297 0.8724 4.2362 19 6 5.4589 -0.7548 2.7988 20 6 4.1016 -1.2954 2.3431 21 1 3.5217 -1.6033 3.2131 22 6 4.3142 -2.4966 1.4196 23 1 -0.3634 -1.0276 -0.0016 24 1 -0.3634 0.5125 0.8908 25 1 -0.3633 0.5153 -0.8892 26 1 0.7090 1.1612 -3.4845 27 1 2.0329 -1.6917 1.0600 28 1 2.5977 0.7526 3.3717 29 1 2.6940 1.8243 1.9529 30 1 4.4677 2.3570 3.6110 31 1 5.1649 1.7804 2.0784 32 1 7.2072 1.1518 3.4293 33 1 6.3505 1.7366 4.8759 34 1 6.9765 0.0711 4.8247 35 1 5.9921 -1.5299 3.3492 36 1 6.0438 -0.4604 1.9275 37 1 4.8526 -3.2772 1.9571 38 1 4.8941 -2.1882 0.5497 39 1 3.3472 -2.8803 1.0942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219419525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:17 Heat of formation + Delta-G solvation = -9.741082 kcal Electronic energy + Delta-G solvation = -16735.724567 eV Core-core repulsion = 14291.451617 eV Total energy + Delta-G solvation = -2444.272950 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08443 -35.86932 -33.56858 -31.93832 -30.87131 -27.98294 -26.64677 -25.13310 -24.81398 -22.09295 -21.20590 -19.84520 -19.09936 -16.60465 -15.50305 -15.08612 -14.77910 -14.46948 -14.33767 -13.79999 -13.11030 -12.77343 -12.50903 -12.47854 -12.18174 -11.91407 -11.62809 -11.35265 -11.15427 -11.08652 -10.89635 -10.71149 -10.50452 -10.44192 -10.11054 -10.06096 -9.74348 -9.42729 -9.03626 -8.37723 -8.18246 -7.19979 -5.97777 -4.09951 3.27941 3.33302 3.35407 4.09150 4.40351 5.06022 5.10849 5.18326 5.28239 5.34077 5.47118 5.55740 5.64631 5.70607 5.81022 5.84970 5.92486 5.99557 6.15425 6.21942 6.35815 6.41168 6.53817 6.57249 6.73287 6.95056 6.97229 7.20717 7.25989 7.26572 7.38021 7.57245 7.77538 8.13640 8.22149 8.38580 8.73526 9.03974 9.57603 11.03205 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.007476 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.891851 B = 3744.355640 C = 3998.400043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.209 3.791 3 H 0.030 0.970 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.688 5.688 13 C 0.098 3.902 14 H 0.043 0.957 15 C -0.102 4.102 16 C 0.057 3.943 17 N -0.543 5.543 18 C 0.026 3.974 19 C 0.065 3.935 20 C -0.089 4.089 21 H 0.079 0.921 22 C -0.147 4.147 23 H 0.023 0.977 24 H 0.012 0.988 25 H 0.079 0.921 26 H 0.261 0.739 27 H 0.329 0.671 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -1.303 9.830 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.101 3.899 3 H 0.048 0.952 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.319 5.319 13 C -0.013 4.013 14 H 0.061 0.939 15 C -0.141 4.141 16 C -0.072 4.072 17 N -0.268 5.268 18 C -0.123 4.123 19 C -0.063 4.063 20 C -0.109 4.109 21 H 0.098 0.902 22 C -0.205 4.205 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.436 -0.899 10.500 12.898 hybrid contribution 1.474 -0.579 -2.398 2.873 sum 8.910 -1.479 8.102 12.133 Atomic orbital electron populations 1.21679 0.97966 0.98894 0.99743 1.19146 0.92244 0.94003 0.84523 0.95179 1.21829 1.31670 1.12706 0.91939 0.92918 1.24929 0.94901 0.94871 0.98862 1.69878 1.36441 1.22742 1.23461 0.86742 0.79105 0.79943 0.82691 1.20268 1.21236 1.20481 1.60950 1.22543 1.09182 1.39252 1.21365 0.90804 0.93393 0.95705 0.93925 1.21574 0.94660 0.98135 0.99721 1.22137 0.95871 0.93065 0.96078 1.61938 1.21486 1.07158 1.36177 1.22331 0.90479 1.00670 0.98790 1.22115 0.97183 0.92533 0.94518 1.21311 0.95293 0.95494 0.98761 0.90213 1.21829 1.02199 0.97245 0.99270 0.95796 0.96874 0.90198 0.92898 0.85235 0.91124 0.91575 0.91209 0.95215 0.96038 0.91632 0.91716 0.91288 0.95118 0.93243 0.92787 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.29 37.16 0.35 -2.76 16 2 C 0.21 5.27 2.39 -68.87 -0.16 5.10 16 3 H 0.03 0.84 7.30 -51.93 -0.38 0.46 16 4 C -0.54 -14.69 8.38 -34.44 -0.29 -14.98 16 5 H 0.05 1.41 7.71 -52.49 -0.40 1.00 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.69 -14.72 6.07 -100.83 -0.61 -15.33 16 13 C 0.10 1.86 1.80 -67.59 -0.12 1.74 16 14 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 15 C -0.10 -1.79 5.60 -26.65 -0.15 -1.94 16 16 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 17 N -0.54 -7.66 4.91 -242.96 -1.19 -8.86 16 18 C 0.03 0.29 9.59 60.07 0.58 0.87 16 19 C 0.06 0.93 4.75 -3.83 -0.02 0.91 16 20 C -0.09 -1.42 2.50 -90.54 -0.23 -1.65 16 21 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 22 C -0.15 -2.25 9.00 37.16 0.33 -1.91 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.33 6.93 5.95 -39.30 -0.23 6.69 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.24 7.65 -51.93 -0.40 0.84 16 30 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -27.87 299.98 -8.59 -36.46 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.08 Total: 3.72 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 0.17 Total: -12.05 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -1.18 Total: -48.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.87 -8.59 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219419525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.717 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds