Wall clock time and date at job start Mon Mar 30 2020 03:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47834 * 2 1 4 4 C 1.50698 * 109.46942 * 239.99372 * 2 1 3 5 5 H 1.07998 * 120.00280 * 240.00477 * 4 2 1 6 6 C 1.37874 * 119.99819 * 60.00381 * 4 2 1 7 7 N 1.31512 * 120.00057 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00115 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47050 * 60.00223 * 8 6 4 10 10 H 1.48495 * 109.47444 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47485 * 300.00359 * 8 6 4 12 12 N 1.46901 * 109.47033 * 120.00036 * 2 1 3 13 13 C 1.46896 * 111.00171 * 207.01739 * 12 2 1 14 14 H 1.09005 * 109.57406 * 327.00981 * 13 12 2 15 15 C 1.53126 * 109.55756 * 87.14710 * 13 12 2 16 16 C 1.53036 * 109.30939 * 177.51794 * 15 13 12 17 17 N 1.46840 * 109.52837 * 300.84403 * 16 15 13 18 18 C 1.46905 * 111.00377 * 185.83791 * 17 16 15 19 19 C 1.46849 * 111.19651 * 61.74303 * 17 16 15 20 20 C 1.53038 * 109.52059 * 298.25574 * 19 17 16 21 21 H 1.08998 * 109.50471 * 299.20059 * 20 19 17 22 22 C 1.53001 * 109.50114 * 179.12145 * 20 19 17 23 23 H 1.08997 * 109.47493 * 179.91280 * 1 2 3 24 24 H 1.09004 * 109.47147 * 299.91522 * 1 2 3 25 25 H 1.09005 * 109.47010 * 59.90622 * 1 2 3 26 26 H 0.97006 * 119.99897 * 180.02562 * 7 6 4 27 27 H 1.00894 * 111.00282 * 83.06071 * 12 2 1 28 28 H 1.09001 * 109.46593 * 57.58427 * 15 13 12 29 29 H 1.08995 * 109.50652 * 297.48030 * 15 13 12 30 30 H 1.09000 * 109.46132 * 180.82369 * 16 15 13 31 31 H 1.08999 * 109.46332 * 60.86465 * 16 15 13 32 32 H 1.08999 * 109.46760 * 295.79399 * 18 17 16 33 33 H 1.09004 * 109.46738 * 55.78790 * 18 17 16 34 34 H 1.09000 * 109.47043 * 175.78966 * 18 17 16 35 35 H 1.08998 * 109.46291 * 178.24393 * 19 17 16 36 36 H 1.08994 * 109.45426 * 58.26995 * 19 17 16 37 37 H 1.08998 * 109.47178 * 60.08151 * 22 20 19 38 38 H 1.09007 * 109.47379 * 300.07919 * 22 20 19 39 39 H 1.09001 * 109.46755 * 180.08287 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2395 -2.4826 7 7 0.9436 0.8300 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8278 -2.5201 -4.0080 10 1 1.8268 -0.4203 -5.2204 11 1 3.8074 -1.1195 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 3.3469 -0.1976 1.5881 14 1 3.9077 0.0828 0.6964 15 6 3.1922 1.0234 2.4991 16 6 4.5758 1.4967 2.9505 17 7 5.2558 0.4111 3.6683 18 6 6.5297 0.8724 4.2362 19 6 5.4589 -0.7548 2.7988 20 6 4.1016 -1.2954 2.3431 21 1 3.5217 -1.6033 3.2131 22 6 4.3142 -2.4966 1.4196 23 1 -0.3634 -1.0276 -0.0016 24 1 -0.3634 0.5125 0.8908 25 1 -0.3633 0.5153 -0.8892 26 1 0.7090 1.1612 -3.4845 27 1 2.0329 -1.6917 1.0600 28 1 2.5977 0.7526 3.3717 29 1 2.6940 1.8243 1.9529 30 1 4.4677 2.3570 3.6110 31 1 5.1649 1.7804 2.0784 32 1 7.2072 1.1518 3.4293 33 1 6.3505 1.7366 4.8759 34 1 6.9765 0.0711 4.8247 35 1 5.9921 -1.5299 3.3492 36 1 6.0438 -0.4604 1.9275 37 1 4.8526 -3.2772 1.9571 38 1 4.8941 -2.1882 0.5497 39 1 3.3472 -2.8803 1.0942 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219419525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:16 Heat of formation + Delta-G solvation = -28.331557 kcal Electronic energy + Delta-G solvation = -16736.530711 eV Core-core repulsion = 14291.451617 eV Total energy + Delta-G solvation = -2445.079093 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41050 -37.49447 -35.23676 -33.55479 -32.45273 -29.68859 -27.81080 -27.18132 -26.18768 -23.51376 -22.43085 -21.78523 -20.49396 -18.65124 -16.87752 -16.80091 -16.20956 -15.92511 -15.55595 -15.36559 -14.68941 -14.38137 -14.06289 -13.88556 -13.33322 -13.30452 -13.20679 -12.96019 -12.83579 -12.77413 -12.36685 -12.28872 -12.19081 -12.08142 -11.96738 -11.64878 -11.27473 -11.09610 -10.94924 -10.50913 -9.29065 -9.05030 -8.07391 -6.28841 1.37260 1.38026 1.45634 2.38562 3.00129 3.13522 3.59458 3.82265 3.95394 4.09165 4.31399 4.39292 4.51402 4.58518 4.63891 4.64893 4.77742 4.82961 4.83408 4.90675 4.98332 5.03581 5.07234 5.13973 5.19498 5.26338 5.29518 5.35613 5.47313 5.56014 5.68775 6.06680 6.10269 6.17492 6.19945 6.40951 6.84350 7.03378 7.42817 8.90639 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.032217 B = 0.007476 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.891851 B = 3744.355640 C = 3998.400043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.003 1.003 4 C -0.555 4.555 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.682 5.682 13 C 0.098 3.902 14 H 0.007 0.993 15 C -0.098 4.098 16 C 0.064 3.936 17 N -0.550 5.550 18 C 0.025 3.975 19 C 0.068 3.932 20 C -0.082 4.082 21 H 0.083 0.917 22 C -0.143 4.143 23 H 0.026 0.974 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.262 0.738 27 H 0.332 0.668 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.021 0.979 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -2.376 10.905 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.594 4.594 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.201 1.201 12 N -0.313 5.313 13 C -0.012 4.012 14 H 0.025 0.975 15 C -0.136 4.136 16 C -0.065 4.065 17 N -0.274 5.274 18 C -0.123 4.123 19 C -0.060 4.060 20 C -0.101 4.101 21 H 0.101 0.899 22 C -0.201 4.201 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.802 -1.979 11.594 14.691 hybrid contribution 1.055 -0.220 -2.685 2.894 sum 9.858 -2.198 8.909 13.468 Atomic orbital electron populations 1.21529 0.97791 0.98792 0.99189 1.18914 0.92356 0.92427 0.85637 0.98527 1.22101 1.31638 1.12768 0.92898 0.92960 1.25692 0.95114 0.95584 1.01800 1.70009 1.37335 1.23916 1.24084 0.85737 0.78554 0.79024 0.79088 1.19462 1.20849 1.20103 1.60904 1.24194 1.09104 1.37072 1.21420 0.89443 0.95333 0.95038 0.97483 1.21493 0.96444 0.96727 0.98960 1.22034 0.94101 0.94063 0.96290 1.61954 1.23203 1.06721 1.35549 1.22424 0.89017 1.01857 0.98971 1.22097 0.95868 0.93375 0.94662 1.21245 0.96000 0.94523 0.98327 0.89909 1.21790 1.01630 0.97757 0.98957 0.95493 0.95594 0.92524 0.92881 0.84943 0.91013 0.93841 0.89214 0.96272 0.95950 0.90363 0.89963 0.88678 0.96093 0.90103 0.94219 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 9.29 71.98 0.67 -5.15 16 2 C 0.22 11.17 2.39 44.17 0.11 11.28 16 3 H 0.00 -0.19 7.30 -2.39 -0.02 -0.21 16 4 C -0.55 -30.56 8.38 25.60 0.21 -30.35 16 5 H 0.05 2.82 7.71 -2.91 -0.02 2.80 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.91 -53.23 11.32 21.45 0.24 -52.99 16 8 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.68 -29.56 6.07 -472.90 -2.87 -32.43 16 13 C 0.10 3.78 1.80 45.00 0.08 3.86 16 14 H 0.01 0.32 7.70 -2.38 -0.02 0.30 16 15 C -0.10 -3.43 5.60 30.65 0.17 -3.26 16 16 C 0.06 1.83 5.46 86.33 0.47 2.31 16 17 N -0.55 -14.22 4.91 -922.60 -4.53 -18.75 16 18 C 0.02 0.48 9.59 127.69 1.22 1.71 16 19 C 0.07 1.80 4.75 86.33 0.41 2.21 16 20 C -0.08 -2.50 2.50 -10.74 -0.03 -2.52 16 21 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 22 C -0.14 -4.17 9.00 71.98 0.65 -3.52 16 23 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.06 3.14 6.07 -2.38 -0.01 3.12 16 26 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 27 H 0.33 14.00 5.95 -89.70 -0.53 13.47 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.04 1.69 7.65 -2.39 -0.02 1.67 16 30 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 1.33 8.09 -2.38 -0.02 1.31 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 36 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.05 1.62 6.33 -2.39 -0.02 1.61 16 Total: -1.00 -59.88 299.98 -0.26 -60.13 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.46 Total: 20.24 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: 4.42 Total: -22.00 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -7.16 Total: -104.17 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -59.88 -0.26 -60.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219419525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.803 kcal (2) G-P(sol) polarization free energy of solvation -59.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds