Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 N 1.46898 * 109.47250 * 119.99701 * 2 1 3 5 5 C 1.40018 * 110.99903 * 301.11215 * 4 2 1 6 6 C 1.54201 * 112.07942 * 188.09666 * 5 4 2 7 7 H 1.09000 * 109.57581 * 41.00148 * 6 5 4 8 8 C 1.50705 * 109.57289 * 161.25345 * 6 5 4 9 9 H 1.07995 * 119.99999 * 0.02562 * 8 6 5 10 10 C 1.37878 * 119.99995 * 179.97438 * 8 6 5 11 11 N 1.31514 * 119.99824 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 119.99978 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47439 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47259 * 120.00064 * 12 10 8 15 15 H 1.48506 * 109.47346 * 239.99912 * 12 10 8 16 16 N 1.44511 * 108.76959 * 281.20969 * 6 5 4 17 17 C 1.48066 * 113.89687 * 94.35325 * 16 6 5 18 18 C 1.53695 * 112.39144 * 318.16720 * 17 16 6 19 19 C 1.47910 * 111.00278 * 69.08258 * 4 2 1 20 20 H 1.08997 * 109.63258 * 273.48957 * 19 4 2 21 21 C 1.53004 * 109.79119 * 33.97962 * 19 4 2 22 22 H 1.09007 * 109.47428 * 305.80372 * 1 2 3 23 23 H 1.09001 * 109.47273 * 65.80150 * 1 2 3 24 24 H 1.08995 * 109.47336 * 185.80448 * 1 2 3 25 25 H 1.08995 * 109.47233 * 239.99460 * 2 1 3 26 26 H 1.08994 * 109.47250 * 173.40451 * 3 2 1 27 27 H 1.09009 * 109.46559 * 293.39851 * 3 2 1 28 28 H 1.08995 * 109.47178 * 53.39763 * 3 2 1 29 29 H 1.08993 * 108.96067 * 308.76765 * 5 4 2 30 30 H 1.09002 * 108.95925 * 67.43179 * 5 4 2 31 31 H 0.97009 * 119.99687 * 180.02562 * 11 10 8 32 32 H 1.00895 * 111.05563 * 328.15351 * 16 6 5 33 33 H 1.09000 * 108.88218 * 197.44491 * 17 16 6 34 34 H 1.09000 * 108.88319 * 78.88689 * 17 16 6 35 35 H 1.08997 * 108.95824 * 79.28219 * 18 17 16 36 36 H 1.09000 * 108.95617 * 198.01923 * 18 17 16 37 37 H 1.09003 * 109.46584 * 172.38884 * 21 19 4 38 38 H 1.08992 * 109.47644 * 292.38929 * 21 19 4 39 39 H 1.09002 * 109.47272 * 52.39791 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 1.5501 -0.0722 2.3637 6 6 2.2054 -0.6515 3.6336 7 1 3.2670 -0.8195 3.4526 8 6 2.0350 0.3165 4.7761 9 1 1.5142 1.2496 4.6201 10 6 2.5432 0.0103 6.0207 11 7 3.1770 -1.1263 6.2107 12 14 2.3326 1.2104 7.4365 13 1 1.5904 2.4070 6.9650 14 1 1.5726 0.5556 8.5316 15 1 3.6679 1.6228 7.9387 16 7 1.5644 -1.9057 3.9569 17 6 2.2591 -3.0930 3.4093 18 6 2.7489 -2.8724 1.9693 19 6 1.7316 -2.1415 1.1298 20 1 0.7308 -2.3349 1.5160 21 6 1.8237 -2.6189 -0.3210 22 1 -0.3634 0.6012 0.8335 23 1 -0.3634 0.4212 -0.9374 24 1 -0.3634 -1.0223 0.1039 25 1 1.8933 -0.5139 -0.8899 26 1 3.1235 1.4448 0.1180 27 1 1.7763 1.9211 -0.9433 28 1 1.5834 1.9894 0.8250 29 1 1.7665 0.9946 2.3086 30 1 0.4707 -0.2102 2.4277 31 1 3.5342 -1.3419 7.0865 32 1 0.5930 -1.8972 3.6841 33 1 1.5735 -3.9403 3.4229 34 1 3.1162 -3.3233 4.0421 35 1 3.6708 -2.2915 1.9940 36 1 2.9530 -3.8408 1.5125 37 1 1.7449 -3.7056 -0.3515 38 1 1.0119 -2.1793 -0.9004 39 1 2.7801 -2.3120 -0.7444 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219515819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = 12.742714 kcal Electronic energy + Delta-G solvation = -17294.136132 eV Core-core repulsion = 14850.838153 eV Total energy + Delta-G solvation = -2443.297979 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61829 -35.47049 -33.52325 -31.63644 -30.77707 -28.07448 -26.95657 -26.15613 -24.09051 -22.76954 -21.07518 -19.22517 -18.52922 -16.45913 -15.75926 -14.89864 -14.59893 -14.28448 -14.23721 -13.82900 -13.04613 -12.95255 -12.45378 -12.19045 -12.12891 -11.87077 -11.77439 -11.30331 -11.17978 -10.87801 -10.80305 -10.71177 -10.66976 -10.59036 -10.18470 -10.05754 -9.66500 -9.37593 -8.91491 -8.26169 -7.50503 -6.60660 -5.75615 -3.86474 3.39590 3.47576 3.50526 4.39008 4.60751 5.18858 5.23618 5.30514 5.42019 5.42822 5.56313 5.66419 5.78368 5.86563 5.91250 6.00596 6.01047 6.06265 6.17171 6.18925 6.20491 6.33385 6.38321 6.44261 6.52831 6.57335 6.72341 6.92892 7.06916 7.09442 7.49719 7.80865 8.01247 8.14005 8.47445 8.85327 8.98811 9.34372 9.80560 11.29852 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.009328 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.431802 B = 3000.840760 C = 3629.854112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.144 4.144 4 N -0.535 5.535 5 C 0.037 3.963 6 C 0.236 3.764 7 H 0.042 0.958 8 C -0.520 4.520 9 H 0.050 0.950 10 C 0.084 3.916 11 N -0.856 5.856 12 Si 0.881 3.119 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.287 1.287 16 N -0.658 5.658 17 C 0.072 3.928 18 C -0.146 4.146 19 C 0.094 3.906 20 H 0.037 0.963 21 C -0.149 4.149 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.006 0.994 31 H 0.252 0.748 32 H 0.304 0.696 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -1.305 -12.081 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.036 4.036 3 C -0.202 4.202 4 N -0.259 5.259 5 C -0.093 4.093 6 C 0.128 3.872 7 H 0.059 0.941 8 C -0.560 4.560 9 H 0.068 0.932 10 C -0.121 4.121 11 N -0.492 5.492 12 Si 0.709 3.291 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.213 1.213 16 N -0.286 5.286 17 C -0.059 4.059 18 C -0.186 4.186 19 C -0.014 4.014 20 H 0.055 0.945 21 C -0.207 4.207 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.119 -1.424 -11.322 11.606 hybrid contribution -1.306 0.603 -0.052 1.439 sum -3.424 -0.821 -11.374 11.906 Atomic orbital electron populations 1.22480 0.98409 1.01651 1.01669 1.21771 0.92137 0.95186 0.94460 1.21883 1.02082 0.95359 1.00864 1.59641 1.62248 1.01647 1.02413 1.22061 0.96002 0.99673 0.91607 1.18911 0.94380 0.85929 0.87955 0.94055 1.21000 1.37614 1.02485 0.94903 0.93203 1.24871 0.94667 0.94492 0.98112 1.70059 1.35575 1.21630 1.21900 0.86752 0.77552 0.81573 0.83174 1.20059 1.21252 1.21332 1.59763 1.03069 1.02287 1.63483 1.22217 0.98746 0.93618 0.91285 1.22132 1.00115 0.98780 0.97607 1.21210 0.97468 0.87838 0.94845 0.94523 1.22082 1.01832 1.00395 0.96356 0.92253 0.92991 0.92934 0.90192 0.91834 0.93159 0.92385 0.91232 0.97636 0.93785 0.87849 0.94368 0.91517 0.90962 0.93072 0.92662 0.92857 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.02 37.15 0.30 -2.24 16 2 C 0.07 1.08 2.42 -67.71 -0.16 0.91 16 3 C -0.14 -2.05 8.76 37.16 0.33 -1.72 16 4 N -0.54 -9.57 4.02 -223.80 -0.90 -10.47 16 5 C 0.04 0.77 3.59 -6.75 -0.02 0.75 16 6 C 0.24 5.89 2.00 -69.51 -0.14 5.75 16 7 H 0.04 1.16 6.93 -51.93 -0.36 0.80 16 8 C -0.52 -14.48 8.68 -34.44 -0.30 -14.78 16 9 H 0.05 1.38 7.72 -52.49 -0.41 0.97 16 10 C 0.08 2.37 5.39 -17.82 -0.10 2.28 16 11 N -0.86 -25.09 12.80 55.43 0.71 -24.38 16 12 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 N -0.66 -15.61 5.46 -107.64 -0.59 -16.19 16 17 C 0.07 1.48 6.50 -2.82 -0.02 1.46 16 18 C -0.15 -2.63 4.92 -27.47 -0.14 -2.76 16 19 C 0.09 1.56 1.66 -68.26 -0.11 1.44 16 20 H 0.04 0.65 6.75 -51.93 -0.35 0.30 16 21 C -0.15 -1.98 7.67 37.16 0.28 -1.70 16 22 H 0.06 0.90 6.89 -51.93 -0.36 0.54 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.73 6.29 -51.93 -0.33 0.41 16 25 H 0.08 1.09 5.69 -51.93 -0.30 0.80 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.06 0.89 6.59 -51.93 -0.34 0.54 16 29 H 0.07 1.49 5.67 -51.93 -0.29 1.20 16 30 H 0.01 0.12 6.11 -51.93 -0.32 -0.20 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.30 6.88 7.49 -39.29 -0.29 6.59 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.46 7.23 -51.93 -0.38 1.08 16 36 H 0.05 0.80 7.59 -51.93 -0.39 0.40 16 37 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 38 H 0.05 0.65 5.79 -51.93 -0.30 0.35 16 39 H 0.06 0.82 7.74 -51.93 -0.40 0.42 16 LS Contribution 284.18 15.07 4.28 4.28 Total: -1.00 -28.69 284.18 -8.07 -36.76 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.48 Total: 3.93 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.08 Total: -10.60 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.78 Total: -51.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.69 -8.07 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219515819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.504 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds