Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47252 * 2 1 4 4 N 1.46898 * 109.47250 * 119.99701 * 2 1 3 5 5 C 1.40018 * 110.99903 * 301.11215 * 4 2 1 6 6 C 1.54201 * 112.07942 * 188.09666 * 5 4 2 7 7 H 1.09000 * 109.57581 * 41.00148 * 6 5 4 8 8 C 1.50705 * 109.57289 * 161.25345 * 6 5 4 9 9 H 1.07995 * 119.99999 * 0.02562 * 8 6 5 10 10 C 1.37878 * 119.99995 * 179.97438 * 8 6 5 11 11 N 1.31514 * 119.99824 * 0.02562 * 10 8 6 12 12 Si 1.86793 * 119.99978 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47439 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47259 * 120.00064 * 12 10 8 15 15 H 1.48506 * 109.47346 * 239.99912 * 12 10 8 16 16 N 1.44511 * 108.76959 * 281.20969 * 6 5 4 17 17 C 1.48066 * 113.89687 * 94.35325 * 16 6 5 18 18 C 1.53695 * 112.39144 * 318.16720 * 17 16 6 19 19 C 1.47910 * 111.00278 * 69.08258 * 4 2 1 20 20 H 1.08997 * 109.63258 * 273.48957 * 19 4 2 21 21 C 1.53004 * 109.79119 * 33.97962 * 19 4 2 22 22 H 1.09007 * 109.47428 * 305.80372 * 1 2 3 23 23 H 1.09001 * 109.47273 * 65.80150 * 1 2 3 24 24 H 1.08995 * 109.47336 * 185.80448 * 1 2 3 25 25 H 1.08995 * 109.47233 * 239.99460 * 2 1 3 26 26 H 1.08994 * 109.47250 * 173.40451 * 3 2 1 27 27 H 1.09009 * 109.46559 * 293.39851 * 3 2 1 28 28 H 1.08995 * 109.47178 * 53.39763 * 3 2 1 29 29 H 1.08993 * 108.96067 * 308.76765 * 5 4 2 30 30 H 1.09002 * 108.95925 * 67.43179 * 5 4 2 31 31 H 0.97009 * 119.99687 * 180.02562 * 11 10 8 32 32 H 1.00895 * 111.05563 * 328.15351 * 16 6 5 33 33 H 1.09000 * 108.88218 * 197.44491 * 17 16 6 34 34 H 1.09000 * 108.88319 * 78.88689 * 17 16 6 35 35 H 1.08997 * 108.95824 * 79.28219 * 18 17 16 36 36 H 1.09000 * 108.95617 * 198.01923 * 18 17 16 37 37 H 1.09003 * 109.46584 * 172.38884 * 21 19 4 38 38 H 1.08992 * 109.47644 * 292.38929 * 21 19 4 39 39 H 1.09002 * 109.47272 * 52.39791 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 1.5501 -0.0722 2.3637 6 6 2.2054 -0.6515 3.6336 7 1 3.2670 -0.8195 3.4526 8 6 2.0350 0.3165 4.7761 9 1 1.5142 1.2496 4.6201 10 6 2.5432 0.0103 6.0207 11 7 3.1770 -1.1263 6.2107 12 14 2.3326 1.2104 7.4365 13 1 1.5904 2.4070 6.9650 14 1 1.5726 0.5556 8.5316 15 1 3.6679 1.6228 7.9387 16 7 1.5644 -1.9057 3.9569 17 6 2.2591 -3.0930 3.4093 18 6 2.7489 -2.8724 1.9693 19 6 1.7316 -2.1415 1.1298 20 1 0.7308 -2.3349 1.5160 21 6 1.8237 -2.6189 -0.3210 22 1 -0.3634 0.6012 0.8335 23 1 -0.3634 0.4212 -0.9374 24 1 -0.3634 -1.0223 0.1039 25 1 1.8933 -0.5139 -0.8899 26 1 3.1235 1.4448 0.1180 27 1 1.7763 1.9211 -0.9433 28 1 1.5834 1.9894 0.8250 29 1 1.7665 0.9946 2.3086 30 1 0.4707 -0.2102 2.4277 31 1 3.5342 -1.3419 7.0865 32 1 0.5930 -1.8972 3.6841 33 1 1.5735 -3.9403 3.4229 34 1 3.1162 -3.3233 4.0421 35 1 3.6708 -2.2915 1.9940 36 1 2.9530 -3.8408 1.5125 37 1 1.7449 -3.7056 -0.3515 38 1 1.0119 -2.1793 -0.9004 39 1 2.7801 -2.3120 -0.7444 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219515819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = -7.061963 kcal Electronic energy + Delta-G solvation = -17294.994928 eV Core-core repulsion = 14850.838153 eV Total energy + Delta-G solvation = -2444.156774 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.07301 -37.08822 -35.17035 -33.56443 -32.21339 -29.58864 -28.30096 -27.70734 -25.91004 -24.24009 -22.69876 -20.89304 -19.93852 -18.41174 -17.23409 -16.47063 -16.26811 -16.05051 -15.88964 -15.18115 -14.51025 -14.37777 -14.08011 -13.74353 -13.58780 -13.17292 -13.05451 -12.82095 -12.63800 -12.56992 -12.50750 -12.42674 -12.10175 -11.98887 -11.78808 -11.48594 -11.28306 -11.14044 -10.90397 -10.43762 -8.93893 -8.47395 -7.89761 -6.09911 1.42738 1.44553 1.54910 2.49588 3.08707 3.29304 3.93027 4.00765 4.06329 4.11856 4.24329 4.35241 4.49708 4.50810 4.55170 4.64639 4.69322 4.76387 4.84221 4.91379 4.93844 4.97255 5.08102 5.11508 5.20271 5.30780 5.35499 5.39182 5.44944 5.48837 5.51757 5.84374 6.35069 6.46098 6.61129 6.80258 7.15000 7.34402 7.61807 9.12445 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.009328 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.431802 B = 3000.840760 C = 3629.854112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 C -0.142 4.142 4 N -0.550 5.550 5 C 0.063 3.937 6 C 0.242 3.758 7 H 0.000 1.000 8 C -0.540 4.540 9 H 0.045 0.955 10 C 0.034 3.966 11 N -0.886 5.886 12 Si 0.946 3.054 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.677 5.677 17 C 0.074 3.926 18 C -0.136 4.136 19 C 0.095 3.905 20 H 0.029 0.971 21 C -0.141 4.141 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.002 0.998 31 H 0.252 0.748 32 H 0.311 0.689 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 -1.380 -13.919 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.037 4.037 3 C -0.200 4.200 4 N -0.275 5.275 5 C -0.068 4.068 6 C 0.134 3.866 7 H 0.018 0.982 8 C -0.579 4.579 9 H 0.063 0.937 10 C -0.168 4.168 11 N -0.523 5.523 12 Si 0.773 3.227 13 H -0.194 1.194 14 H -0.210 1.210 15 H -0.209 1.209 16 N -0.306 5.306 17 C -0.055 4.055 18 C -0.176 4.176 19 C -0.013 4.013 20 H 0.047 0.953 21 C -0.198 4.198 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.121 -1.494 -13.180 13.626 hybrid contribution -0.970 0.605 0.497 1.246 sum -4.090 -0.889 -12.682 13.355 Atomic orbital electron populations 1.22401 0.97288 1.01519 1.02302 1.21922 0.93023 0.95253 0.93463 1.21872 1.01101 0.95210 1.01787 1.59536 1.62798 1.02694 1.02449 1.21557 0.95121 0.98817 0.91333 1.18620 0.92425 0.86357 0.89225 0.98173 1.21402 1.37295 1.03028 0.96193 0.93701 1.25611 0.94486 0.96119 1.00610 1.70198 1.36530 1.23290 1.22306 0.85729 0.77525 0.79569 0.79924 1.19405 1.21046 1.20920 1.59475 1.03536 1.02687 1.64927 1.22127 0.97806 0.93090 0.92499 1.22009 0.99144 1.00198 0.96208 1.21237 0.96225 0.86787 0.97008 0.95267 1.22017 1.02591 1.01636 0.93529 0.94183 0.90306 0.92905 0.88037 0.93039 0.90135 0.94133 0.92430 0.97994 0.93943 0.87192 0.92033 0.94879 0.93811 0.90019 0.90816 0.91290 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 8.02 71.98 0.58 -3.82 16 2 C 0.07 1.93 2.42 44.92 0.11 2.04 16 3 C -0.14 -3.81 8.76 71.98 0.63 -3.18 16 4 N -0.55 -19.26 4.02 -861.96 -3.46 -22.73 16 5 C 0.06 2.67 3.59 87.95 0.32 2.98 16 6 C 0.24 12.49 2.00 45.02 0.09 12.58 16 7 H 0.00 0.02 6.93 -2.39 -0.02 0.00 16 8 C -0.54 -30.84 8.68 25.60 0.22 -30.62 16 9 H 0.04 2.54 7.72 -2.91 -0.02 2.51 16 10 C 0.03 1.96 5.39 84.65 0.46 2.42 16 11 N -0.89 -53.45 12.80 21.45 0.27 -53.18 16 12 Si 0.95 45.33 29.54 68.60 2.03 47.35 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 16 N -0.68 -32.86 5.46 -494.47 -2.70 -35.56 16 17 C 0.07 3.12 6.50 86.31 0.56 3.68 16 18 C -0.14 -4.79 4.92 30.11 0.15 -4.64 16 19 C 0.09 2.98 1.66 44.01 0.07 3.05 16 20 H 0.03 0.98 6.75 -2.39 -0.02 0.97 16 21 C -0.14 -3.21 7.67 71.98 0.55 -2.65 16 22 H 0.04 1.15 6.89 -2.38 -0.02 1.13 16 23 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.32 6.29 -2.39 -0.02 1.30 16 25 H 0.10 2.39 5.69 -2.39 -0.01 2.38 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.04 1.21 6.59 -2.39 -0.02 1.20 16 29 H 0.06 2.53 5.67 -2.39 -0.01 2.52 16 30 H 0.00 0.09 6.11 -2.39 -0.01 0.08 16 31 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 32 H 0.31 14.18 7.49 -89.70 -0.67 13.51 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.79 7.23 -2.39 -0.02 1.78 16 36 H 0.08 2.36 7.59 -2.39 -0.02 2.35 16 37 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 38 H 0.07 1.38 5.79 -2.39 -0.01 1.37 16 39 H 0.06 1.47 7.74 -2.39 -0.02 1.45 16 Total: -1.00 -63.53 284.18 0.22 -63.31 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.35 Total: 18.98 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 3.73 Total: -18.17 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -5.89 Total: -111.47 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -63.53 0.22 -63.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219515819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.243 kcal (2) G-P(sol) polarization free energy of solvation -63.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds