Wall clock time and date at job start Mon Mar 30 2020 03:30:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47299 * 2 1
4 4 N 1.46903 * 109.47000 * 119.99498 * 2 1 3
5 5 C 1.48065 * 111.00289 * 170.37081 * 4 2 1
6 6 H 1.08996 * 108.79461 * 205.24862 * 5 4 2
7 7 C 1.53004 * 108.79051 * 323.46453 * 5 4 2
8 8 C 1.50748 * 112.93404 * 84.34868 * 5 4 2
9 9 C 1.54511 * 108.93447 * 92.66109 * 8 5 4
10 10 N 1.40081 * 111.51290 * 283.97732 * 9 8 5
11 11 C 1.47696 * 114.56643 * 61.45055 * 10 9 8
12 12 C 1.47744 * 111.00240 * 297.97313 * 4 2 1
13 13 H 1.09008 * 108.98729 * 313.43357 * 12 4 2
14 14 C 1.50696 * 108.99560 * 72.17721 * 12 4 2
15 15 H 1.08005 * 119.99631 * 2.40730 * 14 12 4
16 16 C 1.37873 * 120.00297 * 182.41264 * 14 12 4
17 17 N 1.31511 * 120.00114 * 359.97438 * 16 14 12
18 18 Si 1.86801 * 119.99980 * 180.02562 * 16 14 12
19 19 H 1.48492 * 109.47420 * 89.99315 * 18 16 14
20 20 H 1.48506 * 109.46987 * 209.99582 * 18 16 14
21 21 H 1.48504 * 109.47177 * 329.99374 * 18 16 14
22 22 H 1.08999 * 109.47307 * 309.57811 * 1 2 3
23 23 H 1.08997 * 109.46719 * 69.58209 * 1 2 3
24 24 H 1.09004 * 109.47050 * 189.57446 * 1 2 3
25 25 H 1.09004 * 109.47761 * 239.99503 * 2 1 3
26 26 H 1.08999 * 109.47191 * 186.48997 * 3 2 1
27 27 H 1.09009 * 109.46840 * 306.48601 * 3 2 1
28 28 H 1.09000 * 109.47466 * 66.47960 * 3 2 1
29 29 H 1.08996 * 109.47379 * 183.40533 * 7 5 4
30 30 H 1.09004 * 109.46823 * 303.40119 * 7 5 4
31 31 H 1.08998 * 109.47372 * 63.40170 * 7 5 4
32 32 H 1.08989 * 109.55855 * 332.82280 * 8 5 4
33 33 H 1.09002 * 109.64543 * 212.54798 * 8 5 4
34 34 H 1.09007 * 109.06945 * 163.45701 * 9 8 5
35 35 H 1.08996 * 109.07529 * 44.50424 * 9 8 5
36 36 H 1.00900 * 111.00233 * 188.14734 * 10 9 8
37 37 H 1.08998 * 109.73238 * 38.35391 * 11 10 9
38 38 H 1.09001 * 109.73470 * 159.04648 * 11 10 9
39 39 H 0.96994 * 119.99946 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 3.4814 -0.9157 1.1239
6 1 3.7381 -1.7739 1.7448
7 6 3.8575 -1.2302 -0.3255
8 6 4.2822 0.2750 1.5858
9 6 4.5967 0.1146 3.0901
10 7 3.4759 0.3952 3.8820
11 6 2.3198 -0.4933 3.6468
12 6 1.5861 0.0052 2.4276
13 1 1.7725 1.0731 2.3135
14 6 0.1079 -0.2146 2.6208
15 1 -0.4399 -0.8394 1.9308
16 6 -0.5454 0.3817 3.6784
17 7 0.1216 1.1421 4.5189
18 14 -2.3777 0.1086 3.9182
19 1 -2.5922 -1.0819 4.7795
20 1 -2.9755 1.3032 4.5670
21 1 -3.0221 -0.1126 2.5987
22 1 -0.3634 0.6547 0.7921
23 1 -0.3633 0.3585 -0.9631
24 1 -0.3633 -1.0134 0.1709
25 1 1.8934 -0.5139 -0.8899
26 1 3.1238 1.4447 -0.1162
27 1 1.5849 1.9887 -0.8263
28 1 1.7745 1.9218 0.9423
29 1 4.9222 -1.4560 -0.3838
30 1 3.2842 -2.0904 -0.6712
31 1 3.6340 -0.3682 -0.9541
32 1 3.7050 1.1861 1.4288
33 1 5.2135 0.3313 1.0222
34 1 5.4033 0.7965 3.3599
35 1 4.9192 -0.9092 3.2793
36 1 3.7211 0.4183 4.8605
37 1 2.6675 -1.5122 3.4763
38 1 1.6559 -0.4701 4.5110
39 1 -0.3379 1.5613 5.2631
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000219516493.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:30:28
Heat of formation + Delta-G solvation = 32.768015 kcal
Electronic energy + Delta-G solvation = -17792.918341 eV
Core-core repulsion = 15350.488724 eV
Total energy + Delta-G solvation = -2442.429617 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.36029 -35.44528 -33.74547 -31.79391 -30.18128 -27.75229 -26.71654 -26.46334
-24.21907 -21.91293 -20.50284 -20.12954 -17.52479 -16.51260 -15.57203 -15.37740
-14.57367 -14.16806 -13.92688 -13.52738 -13.17544 -12.60002 -12.28658 -12.02681
-11.84429 -11.77526 -11.19792 -11.09095 -10.95518 -10.83945 -10.71707 -10.55745
-10.39086 -10.08679 -9.90577 -9.82686 -9.41297 -9.15857 -8.71175 -8.27955
-7.28885 -6.90736 -5.87813 -3.89337 3.35383 3.42758 3.45800 4.47464
4.98317 5.16761 5.37898 5.45123 5.55965 5.75874 5.81500 5.88180
6.00010 6.01401 6.14556 6.23118 6.27627 6.34367 6.42902 6.54059
6.56584 6.67345 6.71442 6.74910 6.89168 6.99475 7.09045 7.11226
7.42117 7.61135 7.78548 7.99008 8.25905 8.37743 8.40938 8.56654
8.79667 9.17554 9.69319 11.15694
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.028056 B = 0.012243 C = 0.009585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 997.775719 B = 2286.528312 C = 2920.530123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.089 3.911
3 C -0.191 4.191
4 N -0.533 5.533
5 C 0.084 3.916
6 H 0.062 0.938
7 C -0.151 4.151
8 C -0.156 4.156
9 C 0.087 3.913
10 N -0.699 5.699
11 C 0.085 3.915
12 C 0.215 3.785
13 H 0.032 0.968
14 C -0.500 4.500
15 H 0.073 0.927
16 C 0.054 3.946
17 N -0.882 5.882
18 Si 0.886 3.114
19 H -0.284 1.284
20 H -0.290 1.290
21 H -0.274 1.274
22 H 0.093 0.907
23 H 0.022 0.978
24 H 0.054 0.946
25 H 0.063 0.937
26 H 0.049 0.951
27 H 0.041 0.959
28 H 0.074 0.926
29 H 0.046 0.954
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.087 0.913
33 H 0.054 0.946
34 H 0.050 0.950
35 H -0.002 1.002
36 H 0.331 0.669
37 H 0.006 0.994
38 H 0.099 0.901
39 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.220 -1.700 -5.505 8.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.020 4.020
3 C -0.249 4.249
4 N -0.259 5.259
5 C -0.025 4.025
6 H 0.081 0.919
7 C -0.208 4.208
8 C -0.195 4.195
9 C -0.045 4.045
10 N -0.330 5.330
11 C -0.042 4.042
12 C 0.109 3.891
13 H 0.049 0.951
14 C -0.539 4.539
15 H 0.091 0.909
16 C -0.147 4.147
17 N -0.521 5.521
18 Si 0.714 3.286
19 H -0.210 1.210
20 H -0.216 1.216
21 H -0.199 1.199
22 H 0.112 0.888
23 H 0.041 0.959
24 H 0.073 0.927
25 H 0.081 0.919
26 H 0.067 0.933
27 H 0.060 0.940
28 H 0.093 0.907
29 H 0.065 0.935
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.106 0.894
33 H 0.073 0.927
34 H 0.069 0.931
35 H 0.016 0.984
36 H 0.149 0.851
37 H 0.024 0.976
38 H 0.117 0.883
39 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 5.761 -1.614 -5.761 8.306
hybrid contribution -0.171 -0.088 0.685 0.712
sum 5.589 -1.703 -5.076 7.740
Atomic orbital electron populations
1.22292 0.94634 1.02967 1.00064 1.21502 0.95997 0.91277 0.93256
1.22726 1.00007 0.99710 1.02487 1.62525 1.07993 1.51724 1.03616
1.21376 0.89197 0.96621 0.95274 0.91947 1.22154 0.99813 1.01582
0.97290 1.22469 0.99944 1.01601 0.95524 1.20742 0.92858 0.96603
0.94286 1.57426 1.07917 1.58677 1.08972 1.21940 0.89626 0.90027
1.02630 1.19158 0.93611 0.93433 0.82894 0.95070 1.21540 0.92860
1.28832 1.10680 0.90906 1.24953 0.97675 0.95860 0.96242 1.70030
1.35040 1.31813 1.15236 0.86691 0.86258 0.77352 0.78263 1.21009
1.21598 1.19937 0.88833 0.95912 0.92665 0.91919 0.93259 0.93970
0.90691 0.93520 0.92471 0.92443 0.89446 0.92715 0.93134 0.98448
0.85117 0.97618 0.88278 0.93344
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.87 7.61 37.16 0.28 -2.59 16
2 C 0.09 1.71 2.41 -67.71 -0.16 1.55 16
3 C -0.19 -3.55 7.32 37.16 0.27 -3.28 16
4 N -0.53 -11.29 4.46 -213.27 -0.95 -12.24 16
5 C 0.08 1.55 2.23 -68.20 -0.15 1.40 16
6 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16
7 C -0.15 -2.31 7.62 37.16 0.28 -2.02 16
8 C -0.16 -2.77 4.36 -27.07 -0.12 -2.89 16
9 C 0.09 1.56 6.03 -6.55 -0.04 1.52 16
10 N -0.70 -14.56 6.11 -118.27 -0.72 -15.28 16
11 C 0.09 2.01 5.33 -4.50 -0.02 1.99 16
12 C 0.21 5.17 1.11 -69.52 -0.08 5.09 16
13 H 0.03 0.85 4.68 -51.92 -0.24 0.61 16
14 C -0.50 -13.03 5.85 -34.44 -0.20 -13.23 16
15 H 0.07 1.91 5.17 -52.48 -0.27 1.64 16
16 C 0.05 1.43 5.02 -17.82 -0.09 1.34 16
17 N -0.88 -24.33 11.61 55.43 0.64 -23.69 16
18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16
19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
22 H 0.09 2.16 5.68 -51.93 -0.29 1.86 16
23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
24 H 0.05 1.15 7.02 -51.93 -0.36 0.78 16
25 H 0.06 1.11 5.60 -51.93 -0.29 0.82 16
26 H 0.05 0.85 4.97 -51.93 -0.26 0.59 16
27 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16
28 H 0.07 1.64 5.64 -51.93 -0.29 1.34 16
29 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16
30 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16
31 H 0.06 0.86 5.44 -51.93 -0.28 0.58 16
32 H 0.09 1.73 4.17 -51.94 -0.22 1.51 16
33 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16
34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.00 -0.04 7.59 -51.93 -0.39 -0.43 16
36 H 0.33 6.39 8.85 -39.29 -0.35 6.04 16
37 H 0.01 0.13 6.78 -51.93 -0.35 -0.22 16
38 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16
39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16
LS Contribution 268.49 15.07 4.05 4.05
Total: -1.00 -26.71 268.49 -7.92 -34.64
By element:
Atomic # 1 Polarization: 13.62 SS G_CDS: -5.89 Total: 7.72 kcal
Atomic # 6 Polarization: -11.09 SS G_CDS: -0.03 Total: -11.12 kcal
Atomic # 7 Polarization: -50.18 SS G_CDS: -1.03 Total: -51.21 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 4.05 Total: 4.05 kcal
Total: -26.71 -7.92 -34.64 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219516493.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.405 kcal
(2) G-P(sol) polarization free energy of solvation -26.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.693 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds