Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 N 1.46903 * 109.47000 * 119.99498 * 2 1 3 5 5 C 1.48065 * 111.00289 * 170.37081 * 4 2 1 6 6 H 1.08996 * 108.79461 * 205.24862 * 5 4 2 7 7 C 1.53004 * 108.79051 * 323.46453 * 5 4 2 8 8 C 1.50748 * 112.93404 * 84.34868 * 5 4 2 9 9 C 1.54511 * 108.93447 * 92.66109 * 8 5 4 10 10 N 1.40081 * 111.51290 * 283.97732 * 9 8 5 11 11 C 1.47696 * 114.56643 * 61.45055 * 10 9 8 12 12 C 1.47744 * 111.00240 * 297.97313 * 4 2 1 13 13 H 1.09008 * 108.98729 * 313.43357 * 12 4 2 14 14 C 1.50696 * 108.99560 * 72.17721 * 12 4 2 15 15 H 1.08005 * 119.99631 * 2.40730 * 14 12 4 16 16 C 1.37873 * 120.00297 * 182.41264 * 14 12 4 17 17 N 1.31511 * 120.00114 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99980 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47420 * 89.99315 * 18 16 14 20 20 H 1.48506 * 109.46987 * 209.99582 * 18 16 14 21 21 H 1.48504 * 109.47177 * 329.99374 * 18 16 14 22 22 H 1.08999 * 109.47307 * 309.57811 * 1 2 3 23 23 H 1.08997 * 109.46719 * 69.58209 * 1 2 3 24 24 H 1.09004 * 109.47050 * 189.57446 * 1 2 3 25 25 H 1.09004 * 109.47761 * 239.99503 * 2 1 3 26 26 H 1.08999 * 109.47191 * 186.48997 * 3 2 1 27 27 H 1.09009 * 109.46840 * 306.48601 * 3 2 1 28 28 H 1.09000 * 109.47466 * 66.47960 * 3 2 1 29 29 H 1.08996 * 109.47379 * 183.40533 * 7 5 4 30 30 H 1.09004 * 109.46823 * 303.40119 * 7 5 4 31 31 H 1.08998 * 109.47372 * 63.40170 * 7 5 4 32 32 H 1.08989 * 109.55855 * 332.82280 * 8 5 4 33 33 H 1.09002 * 109.64543 * 212.54798 * 8 5 4 34 34 H 1.09007 * 109.06945 * 163.45701 * 9 8 5 35 35 H 1.08996 * 109.07529 * 44.50424 * 9 8 5 36 36 H 1.00900 * 111.00233 * 188.14734 * 10 9 8 37 37 H 1.08998 * 109.73238 * 38.35391 * 11 10 9 38 38 H 1.09001 * 109.73470 * 159.04648 * 11 10 9 39 39 H 0.96994 * 119.99946 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4814 -0.9157 1.1239 6 1 3.7381 -1.7739 1.7448 7 6 3.8575 -1.2302 -0.3255 8 6 4.2822 0.2750 1.5858 9 6 4.5967 0.1146 3.0901 10 7 3.4759 0.3952 3.8820 11 6 2.3198 -0.4933 3.6468 12 6 1.5861 0.0052 2.4276 13 1 1.7725 1.0731 2.3135 14 6 0.1079 -0.2146 2.6208 15 1 -0.4399 -0.8394 1.9308 16 6 -0.5454 0.3817 3.6784 17 7 0.1216 1.1421 4.5189 18 14 -2.3777 0.1086 3.9182 19 1 -2.5922 -1.0819 4.7795 20 1 -2.9755 1.3032 4.5670 21 1 -3.0221 -0.1126 2.5987 22 1 -0.3634 0.6547 0.7921 23 1 -0.3633 0.3585 -0.9631 24 1 -0.3633 -1.0134 0.1709 25 1 1.8934 -0.5139 -0.8899 26 1 3.1238 1.4447 -0.1162 27 1 1.5849 1.9887 -0.8263 28 1 1.7745 1.9218 0.9423 29 1 4.9222 -1.4560 -0.3838 30 1 3.2842 -2.0904 -0.6712 31 1 3.6340 -0.3682 -0.9541 32 1 3.7050 1.1861 1.4288 33 1 5.2135 0.3313 1.0222 34 1 5.4033 0.7965 3.3599 35 1 4.9192 -0.9092 3.2793 36 1 3.7211 0.4183 4.8605 37 1 2.6675 -1.5122 3.4763 38 1 1.6559 -0.4701 4.5110 39 1 -0.3379 1.5613 5.2631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219516493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 32.768015 kcal Electronic energy + Delta-G solvation = -17792.918341 eV Core-core repulsion = 15350.488724 eV Total energy + Delta-G solvation = -2442.429617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.36029 -35.44528 -33.74547 -31.79391 -30.18128 -27.75229 -26.71654 -26.46334 -24.21907 -21.91293 -20.50284 -20.12954 -17.52479 -16.51260 -15.57203 -15.37740 -14.57367 -14.16806 -13.92688 -13.52738 -13.17544 -12.60002 -12.28658 -12.02681 -11.84429 -11.77526 -11.19792 -11.09095 -10.95518 -10.83945 -10.71707 -10.55745 -10.39086 -10.08679 -9.90577 -9.82686 -9.41297 -9.15857 -8.71175 -8.27955 -7.28885 -6.90736 -5.87813 -3.89337 3.35383 3.42758 3.45800 4.47464 4.98317 5.16761 5.37898 5.45123 5.55965 5.75874 5.81500 5.88180 6.00010 6.01401 6.14556 6.23118 6.27627 6.34367 6.42902 6.54059 6.56584 6.67345 6.71442 6.74910 6.89168 6.99475 7.09045 7.11226 7.42117 7.61135 7.78548 7.99008 8.25905 8.37743 8.40938 8.56654 8.79667 9.17554 9.69319 11.15694 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.012243 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.775719 B = 2286.528312 C = 2920.530123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 C -0.191 4.191 4 N -0.533 5.533 5 C 0.084 3.916 6 H 0.062 0.938 7 C -0.151 4.151 8 C -0.156 4.156 9 C 0.087 3.913 10 N -0.699 5.699 11 C 0.085 3.915 12 C 0.215 3.785 13 H 0.032 0.968 14 C -0.500 4.500 15 H 0.073 0.927 16 C 0.054 3.946 17 N -0.882 5.882 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.274 1.274 22 H 0.093 0.907 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.050 0.950 35 H -0.002 1.002 36 H 0.331 0.669 37 H 0.006 0.994 38 H 0.099 0.901 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -1.700 -5.505 8.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 C -0.249 4.249 4 N -0.259 5.259 5 C -0.025 4.025 6 H 0.081 0.919 7 C -0.208 4.208 8 C -0.195 4.195 9 C -0.045 4.045 10 N -0.330 5.330 11 C -0.042 4.042 12 C 0.109 3.891 13 H 0.049 0.951 14 C -0.539 4.539 15 H 0.091 0.909 16 C -0.147 4.147 17 N -0.521 5.521 18 Si 0.714 3.286 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.199 1.199 22 H 0.112 0.888 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.016 0.984 36 H 0.149 0.851 37 H 0.024 0.976 38 H 0.117 0.883 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.761 -1.614 -5.761 8.306 hybrid contribution -0.171 -0.088 0.685 0.712 sum 5.589 -1.703 -5.076 7.740 Atomic orbital electron populations 1.22292 0.94634 1.02967 1.00064 1.21502 0.95997 0.91277 0.93256 1.22726 1.00007 0.99710 1.02487 1.62525 1.07993 1.51724 1.03616 1.21376 0.89197 0.96621 0.95274 0.91947 1.22154 0.99813 1.01582 0.97290 1.22469 0.99944 1.01601 0.95524 1.20742 0.92858 0.96603 0.94286 1.57426 1.07917 1.58677 1.08972 1.21940 0.89626 0.90027 1.02630 1.19158 0.93611 0.93433 0.82894 0.95070 1.21540 0.92860 1.28832 1.10680 0.90906 1.24953 0.97675 0.95860 0.96242 1.70030 1.35040 1.31813 1.15236 0.86691 0.86258 0.77352 0.78263 1.21009 1.21598 1.19937 0.88833 0.95912 0.92665 0.91919 0.93259 0.93970 0.90691 0.93520 0.92471 0.92443 0.89446 0.92715 0.93134 0.98448 0.85117 0.97618 0.88278 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 7.61 37.16 0.28 -2.59 16 2 C 0.09 1.71 2.41 -67.71 -0.16 1.55 16 3 C -0.19 -3.55 7.32 37.16 0.27 -3.28 16 4 N -0.53 -11.29 4.46 -213.27 -0.95 -12.24 16 5 C 0.08 1.55 2.23 -68.20 -0.15 1.40 16 6 H 0.06 1.22 6.52 -51.93 -0.34 0.88 16 7 C -0.15 -2.31 7.62 37.16 0.28 -2.02 16 8 C -0.16 -2.77 4.36 -27.07 -0.12 -2.89 16 9 C 0.09 1.56 6.03 -6.55 -0.04 1.52 16 10 N -0.70 -14.56 6.11 -118.27 -0.72 -15.28 16 11 C 0.09 2.01 5.33 -4.50 -0.02 1.99 16 12 C 0.21 5.17 1.11 -69.52 -0.08 5.09 16 13 H 0.03 0.85 4.68 -51.92 -0.24 0.61 16 14 C -0.50 -13.03 5.85 -34.44 -0.20 -13.23 16 15 H 0.07 1.91 5.17 -52.48 -0.27 1.64 16 16 C 0.05 1.43 5.02 -17.82 -0.09 1.34 16 17 N -0.88 -24.33 11.61 55.43 0.64 -23.69 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.09 2.16 5.68 -51.93 -0.29 1.86 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 1.15 7.02 -51.93 -0.36 0.78 16 25 H 0.06 1.11 5.60 -51.93 -0.29 0.82 16 26 H 0.05 0.85 4.97 -51.93 -0.26 0.59 16 27 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.07 1.64 5.64 -51.93 -0.29 1.34 16 29 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 31 H 0.06 0.86 5.44 -51.93 -0.28 0.58 16 32 H 0.09 1.73 4.17 -51.94 -0.22 1.51 16 33 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.00 -0.04 7.59 -51.93 -0.39 -0.43 16 36 H 0.33 6.39 8.85 -39.29 -0.35 6.04 16 37 H 0.01 0.13 6.78 -51.93 -0.35 -0.22 16 38 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 268.49 15.07 4.05 4.05 Total: -1.00 -26.71 268.49 -7.92 -34.64 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.89 Total: 7.72 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.03 Total: -11.12 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -1.03 Total: -51.21 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.71 -7.92 -34.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219516493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.405 kcal (2) G-P(sol) polarization free energy of solvation -26.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds