Wall clock time and date at job start Mon Mar 30 2020 03:30:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47299 * 2 1
4 4 N 1.46903 * 109.47000 * 119.99498 * 2 1 3
5 5 C 1.48065 * 111.00289 * 170.37081 * 4 2 1
6 6 H 1.08996 * 108.79461 * 205.24862 * 5 4 2
7 7 C 1.53004 * 108.79051 * 323.46453 * 5 4 2
8 8 C 1.50748 * 112.93404 * 84.34868 * 5 4 2
9 9 C 1.54511 * 108.93447 * 92.66109 * 8 5 4
10 10 N 1.40081 * 111.51290 * 283.97732 * 9 8 5
11 11 C 1.47696 * 114.56643 * 61.45055 * 10 9 8
12 12 C 1.47744 * 111.00240 * 297.97313 * 4 2 1
13 13 H 1.09008 * 108.98729 * 313.43357 * 12 4 2
14 14 C 1.50696 * 108.99560 * 72.17721 * 12 4 2
15 15 H 1.08005 * 119.99631 * 2.40730 * 14 12 4
16 16 C 1.37873 * 120.00297 * 182.41264 * 14 12 4
17 17 N 1.31511 * 120.00114 * 359.97438 * 16 14 12
18 18 Si 1.86801 * 119.99980 * 180.02562 * 16 14 12
19 19 H 1.48492 * 109.47420 * 89.99315 * 18 16 14
20 20 H 1.48506 * 109.46987 * 209.99582 * 18 16 14
21 21 H 1.48504 * 109.47177 * 329.99374 * 18 16 14
22 22 H 1.08999 * 109.47307 * 309.57811 * 1 2 3
23 23 H 1.08997 * 109.46719 * 69.58209 * 1 2 3
24 24 H 1.09004 * 109.47050 * 189.57446 * 1 2 3
25 25 H 1.09004 * 109.47761 * 239.99503 * 2 1 3
26 26 H 1.08999 * 109.47191 * 186.48997 * 3 2 1
27 27 H 1.09009 * 109.46840 * 306.48601 * 3 2 1
28 28 H 1.09000 * 109.47466 * 66.47960 * 3 2 1
29 29 H 1.08996 * 109.47379 * 183.40533 * 7 5 4
30 30 H 1.09004 * 109.46823 * 303.40119 * 7 5 4
31 31 H 1.08998 * 109.47372 * 63.40170 * 7 5 4
32 32 H 1.08989 * 109.55855 * 332.82280 * 8 5 4
33 33 H 1.09002 * 109.64543 * 212.54798 * 8 5 4
34 34 H 1.09007 * 109.06945 * 163.45701 * 9 8 5
35 35 H 1.08996 * 109.07529 * 44.50424 * 9 8 5
36 36 H 1.00900 * 111.00233 * 188.14734 * 10 9 8
37 37 H 1.08998 * 109.73238 * 38.35391 * 11 10 9
38 38 H 1.09001 * 109.73470 * 159.04648 * 11 10 9
39 39 H 0.96994 * 119.99946 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 3.4814 -0.9157 1.1239
6 1 3.7381 -1.7739 1.7448
7 6 3.8575 -1.2302 -0.3255
8 6 4.2822 0.2750 1.5858
9 6 4.5967 0.1146 3.0901
10 7 3.4759 0.3952 3.8820
11 6 2.3198 -0.4933 3.6468
12 6 1.5861 0.0052 2.4276
13 1 1.7725 1.0731 2.3135
14 6 0.1079 -0.2146 2.6208
15 1 -0.4399 -0.8394 1.9308
16 6 -0.5454 0.3817 3.6784
17 7 0.1216 1.1421 4.5189
18 14 -2.3777 0.1086 3.9182
19 1 -2.5922 -1.0819 4.7795
20 1 -2.9755 1.3032 4.5670
21 1 -3.0221 -0.1126 2.5987
22 1 -0.3634 0.6547 0.7921
23 1 -0.3633 0.3585 -0.9631
24 1 -0.3633 -1.0134 0.1709
25 1 1.8934 -0.5139 -0.8899
26 1 3.1238 1.4447 -0.1162
27 1 1.5849 1.9887 -0.8263
28 1 1.7745 1.9218 0.9423
29 1 4.9222 -1.4560 -0.3838
30 1 3.2842 -2.0904 -0.6712
31 1 3.6340 -0.3682 -0.9541
32 1 3.7050 1.1861 1.4288
33 1 5.2135 0.3313 1.0222
34 1 5.4033 0.7965 3.3599
35 1 4.9192 -0.9092 3.2793
36 1 3.7211 0.4183 4.8605
37 1 2.6675 -1.5122 3.4763
38 1 1.6559 -0.4701 4.5110
39 1 -0.3379 1.5613 5.2631
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000219516493.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:30:28
Heat of formation + Delta-G solvation = 13.872993 kcal
Electronic energy + Delta-G solvation = -17793.737690 eV
Core-core repulsion = 15350.488724 eV
Total energy + Delta-G solvation = -2443.248967 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 226.174 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.95315 -37.04202 -35.53994 -33.47971 -31.92038 -29.20666 -28.40916 -28.10547
-26.01261 -23.52856 -22.15611 -21.68446 -19.16929 -18.39632 -17.16138 -17.13895
-16.31458 -15.94489 -15.39971 -15.12389 -14.80296 -14.10166 -14.05332 -13.50946
-13.48995 -13.24892 -12.88643 -12.75468 -12.54421 -12.46605 -12.35135 -12.24667
-12.11269 -11.81718 -11.60500 -11.40877 -10.94013 -10.88365 -10.55678 -10.28873
-8.94848 -8.59124 -7.91463 -5.97201 1.44605 1.47293 1.55277 2.51162
3.30334 3.41781 3.66088 4.00301 4.15983 4.25981 4.37546 4.49482
4.58443 4.61702 4.68769 4.81213 4.84042 4.88187 4.96370 5.05191
5.08196 5.11794 5.18812 5.25144 5.26956 5.38846 5.45019 5.56984
5.64812 5.89946 5.91271 5.97257 6.49169 6.56102 6.68194 6.92165
7.03988 7.18207 7.64343 9.10514
Molecular weight = 226.17amu
Principal moments of inertia in cm(-1)
A = 0.028056 B = 0.012243 C = 0.009585
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 997.775719 B = 2286.528312 C = 2920.530123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.086 3.914
3 C -0.179 4.179
4 N -0.547 5.547
5 C 0.080 3.920
6 H 0.049 0.951
7 C -0.143 4.143
8 C -0.152 4.152
9 C 0.082 3.918
10 N -0.707 5.707
11 C 0.098 3.902
12 C 0.227 3.773
13 H 0.002 0.998
14 C -0.503 4.503
15 H 0.067 0.933
16 C 0.010 3.990
17 N -0.907 5.907
18 Si 0.939 3.061
19 H -0.283 1.283
20 H -0.292 1.292
21 H -0.270 1.270
22 H 0.058 0.942
23 H 0.050 0.950
24 H 0.043 0.957
25 H 0.089 0.911
26 H 0.064 0.936
27 H 0.060 0.940
28 H 0.036 0.964
29 H 0.072 0.928
30 H 0.056 0.944
31 H 0.063 0.937
32 H 0.067 0.933
33 H 0.087 0.913
34 H 0.073 0.927
35 H 0.004 0.996
36 H 0.337 0.663
37 H 0.001 0.999
38 H 0.067 0.933
39 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.326 -2.103 -7.227 10.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.022 4.022
3 C -0.237 4.237
4 N -0.273 5.273
5 C -0.028 4.028
6 H 0.067 0.933
7 C -0.200 4.200
8 C -0.191 4.191
9 C -0.049 4.049
10 N -0.338 5.338
11 C -0.031 4.031
12 C 0.121 3.879
13 H 0.020 0.980
14 C -0.543 4.543
15 H 0.085 0.915
16 C -0.188 4.188
17 N -0.548 5.548
18 Si 0.767 3.233
19 H -0.209 1.209
20 H -0.218 1.218
21 H -0.195 1.195
22 H 0.077 0.923
23 H 0.069 0.931
24 H 0.062 0.938
25 H 0.107 0.893
26 H 0.083 0.917
27 H 0.079 0.921
28 H 0.055 0.945
29 H 0.091 0.909
30 H 0.075 0.925
31 H 0.082 0.918
32 H 0.085 0.915
33 H 0.105 0.895
34 H 0.092 0.908
35 H 0.022 0.978
36 H 0.155 0.845
37 H 0.019 0.981
38 H 0.085 0.915
39 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 6.877 -2.025 -7.499 10.374
hybrid contribution -0.475 0.025 1.189 1.280
sum 6.402 -2.000 -6.310 9.209
Atomic orbital electron populations
1.22146 0.95556 1.01403 1.00280 1.21614 0.95310 0.91922 0.93378
1.22571 1.01092 0.98979 1.01048 1.62402 1.10321 1.51480 1.03055
1.21453 0.87494 0.96382 0.97520 0.93286 1.22081 1.01505 1.01795
0.94641 1.22435 1.00948 1.00127 0.95583 1.20882 0.92235 0.97537
0.94285 1.57369 1.08417 1.58091 1.09966 1.21598 0.90208 0.90178
1.01117 1.18843 0.92690 0.91958 0.84442 0.98017 1.21809 0.94295
1.28019 1.10148 0.91472 1.25544 1.00950 0.96004 0.96313 1.70151
1.36128 1.32848 1.15641 0.85841 0.82411 0.76943 0.78102 1.20905
1.21790 1.19465 0.92285 0.93126 0.93838 0.89291 0.91727 0.92127
0.94542 0.90915 0.92459 0.91799 0.91478 0.89495 0.90840 0.97800
0.84455 0.98134 0.91513 0.93761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.40 7.61 71.98 0.55 -4.85 16
2 C 0.09 3.19 2.41 44.91 0.11 3.30 16
3 C -0.18 -6.38 7.32 71.98 0.53 -5.86 16
4 N -0.55 -22.76 4.46 -828.67 -3.70 -26.46 16
5 C 0.08 2.77 2.23 43.96 0.10 2.87 16
6 H 0.05 1.83 6.52 -2.39 -0.02 1.82 16
7 C -0.14 -3.83 7.62 71.98 0.55 -3.28 16
8 C -0.15 -5.03 4.36 30.38 0.13 -4.89 16
9 C 0.08 2.80 6.03 88.05 0.53 3.33 16
10 N -0.71 -29.47 6.11 -528.10 -3.23 -32.70 16
11 C 0.10 4.68 5.33 85.43 0.46 5.14 16
12 C 0.23 11.13 1.11 43.28 0.05 11.17 16
13 H 0.00 0.13 4.68 -2.38 -0.01 0.12 16
14 C -0.50 -26.84 5.85 25.60 0.15 -26.69 16
15 H 0.07 3.59 5.17 -2.91 -0.02 3.57 16
16 C 0.01 0.56 5.02 84.65 0.43 0.98 16
17 N -0.91 -51.57 11.61 21.45 0.25 -51.33 16
18 Si 0.94 43.85 29.54 68.60 2.03 45.87 16
19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
22 H 0.06 2.74 5.68 -2.39 -0.01 2.73 16
23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
24 H 0.04 1.78 7.02 -2.39 -0.02 1.77 16
25 H 0.09 2.86 5.60 -2.39 -0.01 2.85 16
26 H 0.06 2.08 4.97 -2.39 -0.01 2.07 16
27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16
28 H 0.04 1.59 5.64 -2.39 -0.01 1.58 16
29 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16
30 H 0.06 1.54 8.00 -2.38 -0.02 1.52 16
31 H 0.06 1.63 5.44 -2.39 -0.01 1.62 16
32 H 0.07 2.55 4.17 -2.39 -0.01 2.54 16
33 H 0.09 2.31 7.69 -2.39 -0.02 2.30 16
34 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16
35 H 0.00 0.14 7.59 -2.39 -0.02 0.12 16
36 H 0.34 13.07 8.85 -89.69 -0.79 12.27 16
37 H 0.00 0.03 6.78 -2.39 -0.02 0.01 16
38 H 0.07 3.63 5.94 -2.39 -0.01 3.62 16
39 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16
Total: -1.00 -58.38 268.49 -0.82 -59.19
By element:
Atomic # 1 Polarization: 23.92 SS G_CDS: 0.26 Total: 24.18 kcal
Atomic # 6 Polarization: -22.34 SS G_CDS: 3.57 Total: -18.77 kcal
Atomic # 7 Polarization: -103.80 SS G_CDS: -6.67 Total: -110.48 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal
Total: -58.38 -0.82 -59.19 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000219516493.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.067 kcal
(2) G-P(sol) polarization free energy of solvation -58.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds