Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 N 1.46903 * 109.47000 * 119.99498 * 2 1 3 5 5 C 1.48065 * 111.00289 * 170.37081 * 4 2 1 6 6 H 1.08996 * 108.79461 * 205.24862 * 5 4 2 7 7 C 1.53004 * 108.79051 * 323.46453 * 5 4 2 8 8 C 1.50748 * 112.93404 * 84.34868 * 5 4 2 9 9 C 1.54511 * 108.93447 * 92.66109 * 8 5 4 10 10 N 1.40081 * 111.51290 * 283.97732 * 9 8 5 11 11 C 1.47696 * 114.56643 * 61.45055 * 10 9 8 12 12 C 1.47744 * 111.00240 * 297.97313 * 4 2 1 13 13 H 1.09008 * 108.98729 * 313.43357 * 12 4 2 14 14 C 1.50696 * 108.99560 * 72.17721 * 12 4 2 15 15 H 1.08005 * 119.99631 * 2.40730 * 14 12 4 16 16 C 1.37873 * 120.00297 * 182.41264 * 14 12 4 17 17 N 1.31511 * 120.00114 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99980 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47420 * 89.99315 * 18 16 14 20 20 H 1.48506 * 109.46987 * 209.99582 * 18 16 14 21 21 H 1.48504 * 109.47177 * 329.99374 * 18 16 14 22 22 H 1.08999 * 109.47307 * 309.57811 * 1 2 3 23 23 H 1.08997 * 109.46719 * 69.58209 * 1 2 3 24 24 H 1.09004 * 109.47050 * 189.57446 * 1 2 3 25 25 H 1.09004 * 109.47761 * 239.99503 * 2 1 3 26 26 H 1.08999 * 109.47191 * 186.48997 * 3 2 1 27 27 H 1.09009 * 109.46840 * 306.48601 * 3 2 1 28 28 H 1.09000 * 109.47466 * 66.47960 * 3 2 1 29 29 H 1.08996 * 109.47379 * 183.40533 * 7 5 4 30 30 H 1.09004 * 109.46823 * 303.40119 * 7 5 4 31 31 H 1.08998 * 109.47372 * 63.40170 * 7 5 4 32 32 H 1.08989 * 109.55855 * 332.82280 * 8 5 4 33 33 H 1.09002 * 109.64543 * 212.54798 * 8 5 4 34 34 H 1.09007 * 109.06945 * 163.45701 * 9 8 5 35 35 H 1.08996 * 109.07529 * 44.50424 * 9 8 5 36 36 H 1.00900 * 111.00233 * 188.14734 * 10 9 8 37 37 H 1.08998 * 109.73238 * 38.35391 * 11 10 9 38 38 H 1.09001 * 109.73470 * 159.04648 * 11 10 9 39 39 H 0.96994 * 119.99946 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4814 -0.9157 1.1239 6 1 3.7381 -1.7739 1.7448 7 6 3.8575 -1.2302 -0.3255 8 6 4.2822 0.2750 1.5858 9 6 4.5967 0.1146 3.0901 10 7 3.4759 0.3952 3.8820 11 6 2.3198 -0.4933 3.6468 12 6 1.5861 0.0052 2.4276 13 1 1.7725 1.0731 2.3135 14 6 0.1079 -0.2146 2.6208 15 1 -0.4399 -0.8394 1.9308 16 6 -0.5454 0.3817 3.6784 17 7 0.1216 1.1421 4.5189 18 14 -2.3777 0.1086 3.9182 19 1 -2.5922 -1.0819 4.7795 20 1 -2.9755 1.3032 4.5670 21 1 -3.0221 -0.1126 2.5987 22 1 -0.3634 0.6547 0.7921 23 1 -0.3633 0.3585 -0.9631 24 1 -0.3633 -1.0134 0.1709 25 1 1.8934 -0.5139 -0.8899 26 1 3.1238 1.4447 -0.1162 27 1 1.5849 1.9887 -0.8263 28 1 1.7745 1.9218 0.9423 29 1 4.9222 -1.4560 -0.3838 30 1 3.2842 -2.0904 -0.6712 31 1 3.6340 -0.3682 -0.9541 32 1 3.7050 1.1861 1.4288 33 1 5.2135 0.3313 1.0222 34 1 5.4033 0.7965 3.3599 35 1 4.9192 -0.9092 3.2793 36 1 3.7211 0.4183 4.8605 37 1 2.6675 -1.5122 3.4763 38 1 1.6559 -0.4701 4.5110 39 1 -0.3379 1.5613 5.2631 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219516493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 13.872993 kcal Electronic energy + Delta-G solvation = -17793.737690 eV Core-core repulsion = 15350.488724 eV Total energy + Delta-G solvation = -2443.248967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95315 -37.04202 -35.53994 -33.47971 -31.92038 -29.20666 -28.40916 -28.10547 -26.01261 -23.52856 -22.15611 -21.68446 -19.16929 -18.39632 -17.16138 -17.13895 -16.31458 -15.94489 -15.39971 -15.12389 -14.80296 -14.10166 -14.05332 -13.50946 -13.48995 -13.24892 -12.88643 -12.75468 -12.54421 -12.46605 -12.35135 -12.24667 -12.11269 -11.81718 -11.60500 -11.40877 -10.94013 -10.88365 -10.55678 -10.28873 -8.94848 -8.59124 -7.91463 -5.97201 1.44605 1.47293 1.55277 2.51162 3.30334 3.41781 3.66088 4.00301 4.15983 4.25981 4.37546 4.49482 4.58443 4.61702 4.68769 4.81213 4.84042 4.88187 4.96370 5.05191 5.08196 5.11794 5.18812 5.25144 5.26956 5.38846 5.45019 5.56984 5.64812 5.89946 5.91271 5.97257 6.49169 6.56102 6.68194 6.92165 7.03988 7.18207 7.64343 9.10514 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.012243 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.775719 B = 2286.528312 C = 2920.530123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 C -0.179 4.179 4 N -0.547 5.547 5 C 0.080 3.920 6 H 0.049 0.951 7 C -0.143 4.143 8 C -0.152 4.152 9 C 0.082 3.918 10 N -0.707 5.707 11 C 0.098 3.902 12 C 0.227 3.773 13 H 0.002 0.998 14 C -0.503 4.503 15 H 0.067 0.933 16 C 0.010 3.990 17 N -0.907 5.907 18 Si 0.939 3.061 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.270 1.270 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.004 0.996 36 H 0.337 0.663 37 H 0.001 0.999 38 H 0.067 0.933 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.326 -2.103 -7.227 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 C -0.237 4.237 4 N -0.273 5.273 5 C -0.028 4.028 6 H 0.067 0.933 7 C -0.200 4.200 8 C -0.191 4.191 9 C -0.049 4.049 10 N -0.338 5.338 11 C -0.031 4.031 12 C 0.121 3.879 13 H 0.020 0.980 14 C -0.543 4.543 15 H 0.085 0.915 16 C -0.188 4.188 17 N -0.548 5.548 18 Si 0.767 3.233 19 H -0.209 1.209 20 H -0.218 1.218 21 H -0.195 1.195 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.022 0.978 36 H 0.155 0.845 37 H 0.019 0.981 38 H 0.085 0.915 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.877 -2.025 -7.499 10.374 hybrid contribution -0.475 0.025 1.189 1.280 sum 6.402 -2.000 -6.310 9.209 Atomic orbital electron populations 1.22146 0.95556 1.01403 1.00280 1.21614 0.95310 0.91922 0.93378 1.22571 1.01092 0.98979 1.01048 1.62402 1.10321 1.51480 1.03055 1.21453 0.87494 0.96382 0.97520 0.93286 1.22081 1.01505 1.01795 0.94641 1.22435 1.00948 1.00127 0.95583 1.20882 0.92235 0.97537 0.94285 1.57369 1.08417 1.58091 1.09966 1.21598 0.90208 0.90178 1.01117 1.18843 0.92690 0.91958 0.84442 0.98017 1.21809 0.94295 1.28019 1.10148 0.91472 1.25544 1.00950 0.96004 0.96313 1.70151 1.36128 1.32848 1.15641 0.85841 0.82411 0.76943 0.78102 1.20905 1.21790 1.19465 0.92285 0.93126 0.93838 0.89291 0.91727 0.92127 0.94542 0.90915 0.92459 0.91799 0.91478 0.89495 0.90840 0.97800 0.84455 0.98134 0.91513 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 7.61 71.98 0.55 -4.85 16 2 C 0.09 3.19 2.41 44.91 0.11 3.30 16 3 C -0.18 -6.38 7.32 71.98 0.53 -5.86 16 4 N -0.55 -22.76 4.46 -828.67 -3.70 -26.46 16 5 C 0.08 2.77 2.23 43.96 0.10 2.87 16 6 H 0.05 1.83 6.52 -2.39 -0.02 1.82 16 7 C -0.14 -3.83 7.62 71.98 0.55 -3.28 16 8 C -0.15 -5.03 4.36 30.38 0.13 -4.89 16 9 C 0.08 2.80 6.03 88.05 0.53 3.33 16 10 N -0.71 -29.47 6.11 -528.10 -3.23 -32.70 16 11 C 0.10 4.68 5.33 85.43 0.46 5.14 16 12 C 0.23 11.13 1.11 43.28 0.05 11.17 16 13 H 0.00 0.13 4.68 -2.38 -0.01 0.12 16 14 C -0.50 -26.84 5.85 25.60 0.15 -26.69 16 15 H 0.07 3.59 5.17 -2.91 -0.02 3.57 16 16 C 0.01 0.56 5.02 84.65 0.43 0.98 16 17 N -0.91 -51.57 11.61 21.45 0.25 -51.33 16 18 Si 0.94 43.85 29.54 68.60 2.03 45.87 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H 0.06 2.74 5.68 -2.39 -0.01 2.73 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.78 7.02 -2.39 -0.02 1.77 16 25 H 0.09 2.86 5.60 -2.39 -0.01 2.85 16 26 H 0.06 2.08 4.97 -2.39 -0.01 2.07 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.04 1.59 5.64 -2.39 -0.01 1.58 16 29 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 30 H 0.06 1.54 8.00 -2.38 -0.02 1.52 16 31 H 0.06 1.63 5.44 -2.39 -0.01 1.62 16 32 H 0.07 2.55 4.17 -2.39 -0.01 2.54 16 33 H 0.09 2.31 7.69 -2.39 -0.02 2.30 16 34 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.00 0.14 7.59 -2.39 -0.02 0.12 16 36 H 0.34 13.07 8.85 -89.69 -0.79 12.27 16 37 H 0.00 0.03 6.78 -2.39 -0.02 0.01 16 38 H 0.07 3.63 5.94 -2.39 -0.01 3.62 16 39 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -58.38 268.49 -0.82 -59.19 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.26 Total: 24.18 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 3.57 Total: -18.77 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -6.67 Total: -110.48 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.38 -0.82 -59.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219516493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.067 kcal (2) G-P(sol) polarization free energy of solvation -58.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds