Wall clock time and date at job start Mon Mar 30 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47244 * 2 1 4 4 N 1.46904 * 109.46665 * 119.99975 * 2 1 3 5 5 C 1.48098 * 111.00405 * 304.37126 * 4 2 1 6 6 C 1.46139 * 112.12098 * 156.44508 * 5 4 2 7 7 C 1.54250 * 111.90231 * 60.90946 * 6 5 4 8 8 H 1.09006 * 109.60895 * 41.30404 * 7 6 5 9 9 C 1.53001 * 109.60583 * 161.63491 * 7 6 5 10 10 N 1.44249 * 108.64828 * 281.38141 * 7 6 5 11 11 C 1.48203 * 114.26856 * 93.39385 * 10 7 6 12 12 C 1.44331 * 110.95272 * 181.80841 * 4 2 1 13 13 H 1.09000 * 108.90836 * 96.41941 * 12 4 2 14 14 C 1.50700 * 108.82295 * 337.90390 * 12 4 2 15 15 H 1.08001 * 119.99969 * 351.24902 * 14 12 4 16 16 C 1.37877 * 120.00218 * 171.25781 * 14 12 4 17 17 N 1.31513 * 119.99813 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00303 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47315 * 59.99277 * 18 16 14 20 20 H 1.48498 * 109.47254 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46758 * 299.99139 * 18 16 14 22 22 H 1.09006 * 109.46802 * 305.89472 * 1 2 3 23 23 H 1.09002 * 109.46987 * 65.89172 * 1 2 3 24 24 H 1.08999 * 109.47574 * 185.89557 * 1 2 3 25 25 H 1.08997 * 109.47153 * 239.99385 * 2 1 3 26 26 H 1.09000 * 109.46868 * 174.56343 * 3 2 1 27 27 H 1.09000 * 109.46882 * 294.56280 * 3 2 1 28 28 H 1.08994 * 109.46944 * 54.56744 * 3 2 1 29 29 H 1.09005 * 108.93798 * 35.79665 * 5 4 2 30 30 H 1.08993 * 108.94231 * 277.10256 * 5 4 2 31 31 H 1.08999 * 108.99378 * 181.53781 * 6 5 4 32 32 H 1.08994 * 108.99365 * 300.37114 * 6 5 4 33 33 H 1.09001 * 109.47419 * 60.00019 * 9 7 6 34 34 H 1.09000 * 109.47312 * 180.02562 * 9 7 6 35 35 H 1.09008 * 109.47187 * 299.99825 * 9 7 6 36 36 H 1.00897 * 111.00193 * 219.84811 * 10 7 6 37 37 H 1.08994 * 108.81975 * 78.98942 * 11 10 7 38 38 H 1.08994 * 108.82414 * 197.39993 * 11 10 7 39 39 H 0.97005 * 120.00493 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4605 -0.0845 2.4288 6 6 1.4547 -1.0198 3.5517 7 6 2.8777 -1.4904 3.9160 8 1 3.5655 -0.6460 3.8691 9 6 2.8788 -2.0754 5.3298 10 7 3.2842 -2.5032 2.9728 11 6 4.0462 -1.9843 1.8124 12 6 3.4618 -0.6745 1.2534 13 1 3.7812 0.1527 1.8872 14 6 3.9976 -0.4566 -0.1382 15 1 3.3283 -0.4858 -0.9853 16 6 5.3423 -0.2201 -0.3299 17 7 6.1573 -0.1841 0.7017 18 14 6.0065 0.0508 -2.0547 19 1 5.3441 1.2340 -2.6601 20 1 7.4717 0.2833 -1.9901 21 1 5.7315 -1.1493 -2.8851 22 1 -0.3633 0.6026 0.8326 23 1 -0.3633 0.4198 -0.9380 24 1 -0.3634 -1.0222 0.1056 25 1 1.8933 -0.5139 -0.8899 26 1 3.1257 1.4440 0.0974 27 1 1.7584 1.9274 -0.9347 28 1 1.5994 1.9836 0.8373 29 1 0.4380 0.2370 2.2310 30 1 2.0591 0.7860 2.6967 31 1 1.0099 -0.5308 4.4183 32 1 0.8520 -1.8885 3.2866 33 1 2.1950 -2.9231 5.3728 34 1 3.8853 -2.4068 5.5851 35 1 2.5570 -1.3126 6.0389 36 1 3.7888 -3.2453 3.4340 37 1 5.0768 -1.8066 2.1195 38 1 4.0396 -2.7356 1.0229 39 1 7.1034 -0.0174 0.5669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219520331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:13 Heat of formation + Delta-G solvation = 20.754460 kcal Electronic energy + Delta-G solvation = -17448.594366 eV Core-core repulsion = 15005.643802 eV Total energy + Delta-G solvation = -2442.950564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.94348 -35.87365 -33.35255 -31.39083 -30.90863 -28.32197 -26.50705 -25.87065 -23.84267 -22.62555 -21.00546 -19.06350 -18.38090 -15.97048 -15.70867 -15.19050 -14.33678 -14.02510 -13.86786 -13.58167 -13.13776 -12.68650 -12.40107 -12.30949 -11.87439 -11.64848 -11.40890 -11.15591 -11.00478 -10.84695 -10.77133 -10.56959 -10.44304 -10.18078 -10.00113 -9.78642 -9.53186 -9.45626 -8.58312 -8.50590 -7.21430 -6.90339 -6.08172 -4.08525 3.28355 3.33393 3.36115 4.37555 4.93320 5.15931 5.30881 5.44974 5.57883 5.75562 5.87981 5.98347 6.03555 6.10009 6.19012 6.28798 6.36222 6.41079 6.44241 6.56398 6.60265 6.68060 6.72192 6.79820 6.89343 6.91754 7.09397 7.14688 7.43331 7.48583 7.77982 7.85058 7.97088 8.25138 8.40443 8.53806 8.71702 9.03220 9.54106 10.99825 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.011885 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.691603 B = 2355.338577 C = 3208.798555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 C -0.184 4.184 4 N -0.509 5.509 5 C 0.051 3.949 6 C -0.100 4.100 7 C 0.098 3.902 8 H 0.038 0.962 9 C -0.153 4.153 10 N -0.698 5.698 11 C 0.090 3.910 12 C 0.217 3.783 13 H 0.006 0.994 14 C -0.523 4.523 15 H 0.077 0.923 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.276 1.276 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.019 0.981 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.321 0.679 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -0.475 4.045 7.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 C -0.243 4.243 4 N -0.233 5.233 5 C -0.077 4.077 6 C -0.138 4.138 7 C -0.013 4.013 8 H 0.056 0.944 9 C -0.211 4.211 10 N -0.329 5.329 11 C -0.038 4.038 12 C 0.108 3.892 13 H 0.024 0.976 14 C -0.561 4.561 15 H 0.094 0.906 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.138 0.862 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.327 -0.888 3.734 8.271 hybrid contribution 1.695 1.237 -0.417 2.139 sum -5.632 0.349 3.317 6.546 Atomic orbital electron populations 1.22020 0.97218 1.01229 1.00001 1.21618 0.91888 0.92863 0.95691 1.22694 1.05539 0.97175 0.98847 1.61860 1.10383 1.51563 0.99446 1.21076 0.99046 0.95389 0.92159 1.20585 0.97106 0.99743 0.96396 1.21013 0.96116 0.94243 0.89902 0.94382 1.22057 1.01164 1.01007 0.96848 1.59113 1.49818 1.12925 1.11086 1.22421 0.94346 0.97507 0.89502 1.18964 0.82280 0.92065 0.95855 0.97647 1.21689 0.93251 1.48249 0.92939 0.90566 1.24994 0.97097 0.95246 0.96707 1.69940 1.04115 1.49314 1.29539 0.86674 0.77778 0.78830 0.84914 1.20220 1.21422 1.20111 0.93582 0.93566 0.92596 0.88983 0.88442 0.94624 0.95153 0.92321 0.96270 0.93447 0.91193 0.92335 0.93337 0.92820 0.86181 0.94048 0.92785 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.75 37.16 0.33 -2.12 16 2 C 0.09 1.77 2.49 -67.71 -0.17 1.60 16 3 C -0.18 -3.73 8.20 37.16 0.30 -3.43 16 4 N -0.51 -11.01 4.43 -224.50 -1.00 -12.01 16 5 C 0.05 0.99 3.92 -6.42 -0.03 0.96 16 6 C -0.10 -1.75 5.06 -29.33 -0.15 -1.90 16 7 C 0.10 1.81 2.74 -68.48 -0.19 1.62 16 8 H 0.04 0.81 6.98 -51.93 -0.36 0.45 16 9 C -0.15 -2.22 8.98 37.16 0.33 -1.88 16 10 N -0.70 -14.03 6.23 -106.31 -0.66 -14.69 16 11 C 0.09 2.16 5.77 -2.62 -0.02 2.15 16 12 C 0.22 5.31 0.92 -69.75 -0.06 5.25 16 13 H 0.01 0.16 6.49 -51.93 -0.34 -0.17 16 14 C -0.52 -13.56 5.28 -34.44 -0.18 -13.74 16 15 H 0.08 1.95 4.69 -52.49 -0.25 1.71 16 16 C 0.06 1.65 5.33 -17.82 -0.09 1.55 16 17 N -0.89 -24.82 11.94 55.43 0.66 -24.16 16 18 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.05 0.73 6.20 -51.93 -0.32 0.40 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.09 2.01 5.68 -51.93 -0.30 1.72 16 26 H 0.10 2.32 5.34 -51.93 -0.28 2.04 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.57 7.33 -51.93 -0.38 0.19 16 29 H 0.06 1.03 5.32 -51.93 -0.28 0.76 16 30 H 0.02 0.40 7.03 -51.93 -0.37 0.03 16 31 H 0.05 0.72 8.00 -51.93 -0.42 0.30 16 32 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.32 5.84 8.26 -39.29 -0.32 5.52 16 37 H 0.04 1.08 6.99 -51.93 -0.36 0.72 16 38 H 0.05 1.37 7.96 -51.93 -0.41 0.95 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -26.92 282.43 -8.15 -35.08 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.47 Total: 5.69 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -1.00 Total: -50.86 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.92 -8.15 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219520331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.832 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds