Wall clock time and date at job start Mon Mar 30 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47244 * 2 1 4 4 N 1.46904 * 109.46665 * 119.99975 * 2 1 3 5 5 C 1.48098 * 111.00405 * 304.37126 * 4 2 1 6 6 C 1.46139 * 112.12098 * 156.44508 * 5 4 2 7 7 C 1.54250 * 111.90231 * 60.90946 * 6 5 4 8 8 H 1.09006 * 109.60895 * 41.30404 * 7 6 5 9 9 C 1.53001 * 109.60583 * 161.63491 * 7 6 5 10 10 N 1.44249 * 108.64828 * 281.38141 * 7 6 5 11 11 C 1.48203 * 114.26856 * 93.39385 * 10 7 6 12 12 C 1.44331 * 110.95272 * 181.80841 * 4 2 1 13 13 H 1.09000 * 108.90836 * 96.41941 * 12 4 2 14 14 C 1.50700 * 108.82295 * 337.90390 * 12 4 2 15 15 H 1.08001 * 119.99969 * 351.24902 * 14 12 4 16 16 C 1.37877 * 120.00218 * 171.25781 * 14 12 4 17 17 N 1.31513 * 119.99813 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00303 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47315 * 59.99277 * 18 16 14 20 20 H 1.48498 * 109.47254 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46758 * 299.99139 * 18 16 14 22 22 H 1.09006 * 109.46802 * 305.89472 * 1 2 3 23 23 H 1.09002 * 109.46987 * 65.89172 * 1 2 3 24 24 H 1.08999 * 109.47574 * 185.89557 * 1 2 3 25 25 H 1.08997 * 109.47153 * 239.99385 * 2 1 3 26 26 H 1.09000 * 109.46868 * 174.56343 * 3 2 1 27 27 H 1.09000 * 109.46882 * 294.56280 * 3 2 1 28 28 H 1.08994 * 109.46944 * 54.56744 * 3 2 1 29 29 H 1.09005 * 108.93798 * 35.79665 * 5 4 2 30 30 H 1.08993 * 108.94231 * 277.10256 * 5 4 2 31 31 H 1.08999 * 108.99378 * 181.53781 * 6 5 4 32 32 H 1.08994 * 108.99365 * 300.37114 * 6 5 4 33 33 H 1.09001 * 109.47419 * 60.00019 * 9 7 6 34 34 H 1.09000 * 109.47312 * 180.02562 * 9 7 6 35 35 H 1.09008 * 109.47187 * 299.99825 * 9 7 6 36 36 H 1.00897 * 111.00193 * 219.84811 * 10 7 6 37 37 H 1.08994 * 108.81975 * 78.98942 * 11 10 7 38 38 H 1.08994 * 108.82414 * 197.39993 * 11 10 7 39 39 H 0.97005 * 120.00493 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4605 -0.0845 2.4288 6 6 1.4547 -1.0198 3.5517 7 6 2.8777 -1.4904 3.9160 8 1 3.5655 -0.6460 3.8691 9 6 2.8788 -2.0754 5.3298 10 7 3.2842 -2.5032 2.9728 11 6 4.0462 -1.9843 1.8124 12 6 3.4618 -0.6745 1.2534 13 1 3.7812 0.1527 1.8872 14 6 3.9976 -0.4566 -0.1382 15 1 3.3283 -0.4858 -0.9853 16 6 5.3423 -0.2201 -0.3299 17 7 6.1573 -0.1841 0.7017 18 14 6.0065 0.0508 -2.0547 19 1 5.3441 1.2340 -2.6601 20 1 7.4717 0.2833 -1.9901 21 1 5.7315 -1.1493 -2.8851 22 1 -0.3633 0.6026 0.8326 23 1 -0.3633 0.4198 -0.9380 24 1 -0.3634 -1.0222 0.1056 25 1 1.8933 -0.5139 -0.8899 26 1 3.1257 1.4440 0.0974 27 1 1.7584 1.9274 -0.9347 28 1 1.5994 1.9836 0.8373 29 1 0.4380 0.2370 2.2310 30 1 2.0591 0.7860 2.6967 31 1 1.0099 -0.5308 4.4183 32 1 0.8520 -1.8885 3.2866 33 1 2.1950 -2.9231 5.3728 34 1 3.8853 -2.4068 5.5851 35 1 2.5570 -1.3126 6.0389 36 1 3.7888 -3.2453 3.4340 37 1 5.0768 -1.8066 2.1195 38 1 4.0396 -2.7356 1.0229 39 1 7.1034 -0.0174 0.5669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219520331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:13 Heat of formation + Delta-G solvation = 1.793166 kcal Electronic energy + Delta-G solvation = -17449.416589 eV Core-core repulsion = 15005.643802 eV Total energy + Delta-G solvation = -2443.772787 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63214 -37.44797 -35.25981 -33.11696 -32.57009 -29.87438 -28.18420 -27.50484 -25.70216 -24.21868 -22.66032 -20.76789 -20.10535 -17.87419 -17.48668 -16.78777 -16.15969 -15.64598 -15.49628 -15.33975 -14.73503 -14.29365 -14.09004 -13.89126 -13.51259 -13.05636 -12.90856 -12.75699 -12.66451 -12.59057 -12.48203 -12.19614 -12.06217 -11.82115 -11.64111 -11.55624 -11.30259 -11.05438 -10.56113 -10.45542 -8.95531 -8.69203 -8.13154 -6.19012 1.40196 1.41166 1.47954 2.40831 3.15385 3.32546 3.65084 4.02232 4.21304 4.26451 4.45694 4.50502 4.57918 4.70536 4.73838 4.83071 4.90497 4.92126 4.93804 5.02443 5.08212 5.10084 5.17111 5.22448 5.26080 5.38299 5.38530 5.54685 5.65815 5.69113 5.77280 5.91294 6.06393 6.50288 6.54312 6.88634 6.90804 7.05826 7.47443 8.94022 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.011885 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.691603 B = 2355.338577 C = 3208.798555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 C -0.174 4.174 4 N -0.515 5.515 5 C 0.052 3.948 6 C -0.097 4.097 7 C 0.093 3.907 8 H 0.000 1.000 9 C -0.142 4.142 10 N -0.691 5.691 11 C 0.105 3.895 12 C 0.231 3.769 13 H -0.037 1.037 14 C -0.525 4.525 15 H 0.079 0.921 16 C 0.013 3.987 17 N -0.923 5.923 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.270 1.270 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.083 0.917 30 H -0.003 1.003 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.333 0.667 37 H 0.010 0.990 38 H 0.034 0.966 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 -0.645 4.219 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 C -0.233 4.233 4 N -0.238 5.238 5 C -0.076 4.076 6 C -0.135 4.135 7 C -0.017 4.017 8 H 0.018 0.982 9 C -0.200 4.200 10 N -0.323 5.323 11 C -0.024 4.024 12 C 0.122 3.878 13 H -0.019 1.019 14 C -0.564 4.564 15 H 0.097 0.903 16 C -0.186 4.186 17 N -0.563 5.563 18 Si 0.775 3.225 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.195 1.195 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.016 0.984 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.151 0.849 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.498 -1.064 3.912 10.327 hybrid contribution 2.322 1.312 -0.442 2.703 sum -7.177 0.249 3.470 7.975 Atomic orbital electron populations 1.21894 0.93713 1.01893 1.01738 1.21676 0.94625 0.92082 0.94241 1.22520 1.02710 0.97843 1.00201 1.61886 1.08389 1.52403 1.01167 1.21178 0.99600 0.95050 0.91725 1.20591 0.96386 0.99586 0.96952 1.21141 0.95830 0.92764 0.92006 0.98192 1.21959 1.01972 1.01913 0.94125 1.59079 1.48821 1.13540 1.10900 1.22037 0.93208 0.96695 0.90487 1.18665 0.84222 0.90606 0.94338 1.01937 1.21987 0.93430 1.47208 0.93768 0.90279 1.25711 0.97512 0.95353 0.99979 1.70086 1.04090 1.50738 1.31373 0.85740 0.76938 0.78949 0.80894 1.19492 1.21555 1.19527 0.92369 0.91413 0.92324 0.91067 0.92572 0.92744 0.94232 0.89851 0.98437 0.90149 0.91010 0.90719 0.93084 0.90811 0.84910 0.97212 0.94729 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.75 71.98 0.63 -3.44 16 2 C 0.08 3.23 2.49 44.91 0.11 3.34 16 3 C -0.17 -6.98 8.20 71.98 0.59 -6.39 16 4 N -0.51 -22.21 4.43 -864.19 -3.83 -26.05 16 5 C 0.05 1.94 3.92 83.96 0.33 2.27 16 6 C -0.10 -3.20 5.06 28.91 0.15 -3.05 16 7 C 0.09 3.37 2.74 45.83 0.13 3.50 16 8 H 0.00 0.00 6.98 -2.38 -0.02 -0.02 16 9 C -0.14 -3.77 8.98 71.98 0.65 -3.12 16 10 N -0.69 -27.82 6.23 -490.25 -3.05 -30.87 16 11 C 0.10 5.22 5.77 86.37 0.50 5.72 16 12 C 0.23 11.72 0.92 44.96 0.04 11.76 16 13 H -0.04 -2.17 6.49 -2.39 -0.02 -2.18 16 14 C -0.53 -28.08 5.28 25.60 0.14 -27.95 16 15 H 0.08 4.13 4.69 -2.91 -0.01 4.11 16 16 C 0.01 0.73 5.33 84.65 0.45 1.18 16 17 N -0.92 -53.72 11.94 21.45 0.26 -53.46 16 18 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H 0.06 1.62 6.20 -2.38 -0.01 1.60 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 3.09 5.68 -2.39 -0.01 3.08 16 26 H 0.06 2.73 5.34 -2.39 -0.01 2.72 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.47 7.33 -2.39 -0.02 1.45 16 29 H 0.08 2.69 5.32 -2.38 -0.01 2.68 16 30 H 0.00 -0.11 7.03 -2.39 -0.02 -0.13 16 31 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 32 H 0.07 2.40 8.12 -2.39 -0.02 2.38 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.33 11.98 8.26 -89.70 -0.74 11.24 16 37 H 0.01 0.54 6.99 -2.39 -0.02 0.52 16 38 H 0.03 1.81 7.96 -2.39 -0.02 1.79 16 39 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -60.40 282.43 -0.61 -61.01 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.28 Total: 20.00 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 3.70 Total: -16.17 kcal Atomic # 7 Polarization: -103.75 SS G_CDS: -6.63 Total: -110.38 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -60.40 -0.61 -61.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219520331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.807 kcal (2) G-P(sol) polarization free energy of solvation -60.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds