Wall clock time and date at job start Mon Mar 30 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.50694 * 109.46915 * 239.99791 * 2 1 3 5 5 H 1.08003 * 120.00534 * 239.99551 * 4 2 1 6 6 C 1.37878 * 120.00294 * 60.00329 * 4 2 1 7 7 N 1.31509 * 120.00483 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 119.99824 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.46978 * 270.00074 * 8 6 4 10 10 H 1.48501 * 109.47292 * 149.99941 * 8 6 4 11 11 H 1.48500 * 109.46882 * 29.99613 * 8 6 4 12 12 N 1.46903 * 109.46842 * 120.00024 * 2 1 3 13 13 C 1.46906 * 110.99764 * 206.04123 * 12 2 1 14 14 H 1.09001 * 109.51897 * 326.46129 * 13 12 2 15 15 C 1.53111 * 109.52478 * 86.65286 * 13 12 2 16 16 C 1.53041 * 109.27841 * 177.56000 * 15 13 12 17 17 N 1.46847 * 109.51922 * 300.82130 * 16 15 13 18 18 C 1.46902 * 110.99699 * 185.83977 * 17 16 15 19 19 C 1.46841 * 111.20078 * 61.74565 * 17 16 15 20 20 H 1.08999 * 109.46522 * 58.26958 * 19 17 16 21 21 C 1.53001 * 109.45372 * 178.24703 * 19 17 16 22 22 C 1.53042 * 109.52022 * 298.25224 * 19 17 16 23 23 H 1.09004 * 109.47084 * 53.97556 * 1 2 3 24 24 H 1.08997 * 109.47128 * 173.97638 * 1 2 3 25 25 H 1.09003 * 109.47322 * 293.97810 * 1 2 3 26 26 H 0.96998 * 120.00070 * 179.97438 * 7 6 4 27 27 H 1.00897 * 111.00280 * 329.98981 * 12 2 1 28 28 H 1.09001 * 109.50453 * 297.49930 * 15 13 12 29 29 H 1.08997 * 109.50525 * 57.62043 * 15 13 12 30 30 H 1.08998 * 109.46298 * 180.80419 * 16 15 13 31 31 H 1.08995 * 109.45263 * 60.82876 * 16 15 13 32 32 H 1.09000 * 109.47136 * 295.79090 * 18 17 16 33 33 H 1.09004 * 109.47129 * 55.78955 * 18 17 16 34 34 H 1.08994 * 109.47128 * 175.78795 * 18 17 16 35 35 H 1.09001 * 109.47120 * 180.02562 * 21 19 17 36 36 H 1.08998 * 109.46678 * 300.04175 * 21 19 17 37 37 H 1.09001 * 109.47279 * 60.04478 * 21 19 17 38 38 H 1.08995 * 109.50516 * 299.23945 * 22 19 17 39 39 H 1.08998 * 109.53696 * 179.13862 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 2.1379 -0.8591 -3.5565 8 14 0.6247 1.2791 -2.6542 9 1 -0.8028 0.8727 -2.6998 10 1 0.9759 1.9951 -3.9069 11 1 0.8470 2.1764 -1.4920 12 7 2.0196 -0.6925 1.1995 13 6 3.3568 -0.2139 1.5747 14 1 3.9168 0.0441 0.6758 15 6 3.2257 1.0215 2.4697 16 6 4.6192 1.4790 2.9067 17 7 5.2861 0.3927 3.6358 18 6 6.5703 0.8416 4.1902 19 6 5.4657 -0.7882 2.7817 20 1 6.0503 -0.5154 1.9031 21 6 6.2012 -1.8770 3.5656 22 6 4.0974 -1.3134 2.3410 23 1 -0.3633 0.6044 -0.8312 24 1 -0.3633 -1.0220 -0.1078 25 1 -0.3634 0.4176 0.9390 26 1 1.9033 -0.5279 -4.4375 27 1 1.3711 -0.5909 1.9657 28 1 2.7371 1.8225 1.9150 29 1 2.6321 0.7723 3.3492 30 1 4.5286 2.3500 3.5558 31 1 5.2076 1.7410 2.0274 32 1 7.2475 1.0990 3.3759 33 1 6.4084 1.7173 4.8188 34 1 7.0077 0.0416 4.7874 35 1 6.3351 -2.7535 2.9317 36 1 7.1757 -1.5030 3.8795 37 1 5.6166 -2.1501 4.4440 38 1 3.5175 -1.5993 3.2184 39 1 4.2309 -2.1808 1.6945 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227326321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:54 Heat of formation + Delta-G solvation = -19.510385 kcal Electronic energy + Delta-G solvation = -16613.162409 eV Core-core repulsion = 14168.465831 eV Total energy + Delta-G solvation = -2444.696578 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46153 -37.78816 -34.95559 -33.33353 -33.28611 -30.13021 -27.89351 -27.15585 -26.42917 -23.63683 -22.41597 -21.73568 -20.59606 -18.73607 -16.94990 -16.82640 -16.48248 -15.99848 -15.67026 -15.25132 -15.13033 -14.77022 -14.37293 -14.10207 -13.56349 -13.19196 -13.04846 -13.02466 -12.73875 -12.71297 -12.62910 -12.45531 -12.13132 -11.99434 -11.75530 -11.56869 -11.54088 -11.22629 -11.07012 -10.71995 -9.29304 -8.97929 -8.27867 -6.29535 1.28205 1.32901 1.43135 2.31008 2.95630 3.05691 3.39422 3.86993 3.94145 4.09826 4.14902 4.37242 4.47404 4.51820 4.52828 4.60102 4.65889 4.67497 4.70314 4.73508 4.81855 4.91462 4.95016 4.97896 5.03550 5.09945 5.12717 5.29667 5.31253 5.43969 5.46212 5.68553 6.10436 6.13732 6.18855 6.53037 6.76628 6.99350 7.35049 8.89981 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.037809 B = 0.006939 C = 0.006679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.378221 B = 4034.156858 C = 4191.495847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.188 3.812 3 H -0.005 1.005 4 C -0.499 4.499 5 H 0.029 0.971 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.299 1.299 11 H -0.251 1.251 12 N -0.678 5.678 13 C 0.093 3.907 14 H 0.037 0.963 15 C -0.135 4.135 16 C 0.063 3.937 17 N -0.540 5.540 18 C 0.020 3.980 19 C 0.081 3.919 20 H 0.020 0.980 21 C -0.138 4.138 22 C -0.087 4.087 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.264 0.736 27 H 0.336 0.664 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.925 5.098 16.877 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.078 3.922 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.047 0.953 6 C -0.191 4.191 7 N -0.595 5.595 8 Si 0.779 3.221 9 H -0.190 1.190 10 H -0.227 1.227 11 H -0.175 1.175 12 N -0.308 5.308 13 C -0.018 4.018 14 H 0.055 0.945 15 C -0.175 4.175 16 C -0.066 4.066 17 N -0.265 5.265 18 C -0.127 4.127 19 C -0.028 4.028 20 H 0.038 0.962 21 C -0.196 4.196 22 C -0.125 4.125 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.155 0.845 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.848 4.404 16.728 17.965 hybrid contribution -0.037 1.447 -1.391 2.007 sum 4.811 5.851 15.337 17.106 Atomic orbital electron populations 1.22214 0.96981 1.01451 1.00274 1.19393 0.92019 0.91627 0.89123 0.98779 1.21305 1.30231 1.11877 0.90355 0.95279 1.25848 0.97712 1.00167 0.95374 1.70055 1.48169 1.42742 0.98506 0.85818 0.79327 0.79881 0.77091 1.18950 1.22701 1.17474 1.60383 1.03335 1.60614 1.06509 1.21502 0.90756 0.93716 0.95786 0.94476 1.22233 0.97640 0.97909 0.99675 1.22002 0.94093 0.94163 0.96324 1.62015 1.23116 1.05545 1.35837 1.22502 0.89192 1.01930 0.99108 1.21622 0.95641 0.91764 0.93737 0.96183 1.21847 1.00168 0.97130 1.00434 1.21481 0.94804 0.97063 0.99199 0.94549 0.92676 0.91195 0.92681 0.84508 0.92548 0.90015 0.88925 0.96359 0.96228 0.90259 0.89673 0.92099 0.91144 0.91278 0.90676 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.25 8.63 71.98 0.62 -5.63 16 2 C 0.19 8.83 2.01 44.17 0.09 8.92 16 3 H -0.01 -0.25 6.32 -2.39 -0.02 -0.27 16 4 C -0.50 -29.47 9.14 25.60 0.23 -29.23 16 5 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 6 C 0.01 0.31 5.45 84.66 0.46 0.77 16 7 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 8 Si 0.95 45.64 24.31 68.60 1.67 47.31 16 9 H -0.26 -11.93 6.92 99.48 0.69 -11.24 16 10 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 11 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 12 N -0.68 -27.57 6.06 -472.91 -2.86 -30.44 16 13 C 0.09 3.43 2.33 44.99 0.10 3.53 16 14 H 0.04 1.67 7.66 -2.39 -0.02 1.65 16 15 C -0.14 -4.00 5.34 30.65 0.16 -3.84 16 16 C 0.06 1.63 5.46 86.33 0.47 2.10 16 17 N -0.54 -13.26 4.75 -897.18 -4.26 -17.52 16 18 C 0.02 0.38 9.05 127.69 1.16 1.54 16 19 C 0.08 2.22 2.44 44.94 0.11 2.33 16 20 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 21 C -0.14 -2.96 8.77 71.98 0.63 -2.33 16 22 C -0.09 -2.80 4.98 30.65 0.15 -2.65 16 23 H 0.04 1.53 3.45 -2.39 -0.01 1.53 16 24 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.07 2.30 8.00 -2.39 -0.02 2.28 16 26 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.34 11.59 7.94 -89.70 -0.71 10.88 16 28 H 0.06 1.74 7.60 -2.39 -0.02 1.73 16 29 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 30 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 1.26 8.09 -2.38 -0.02 1.24 16 34 H 0.08 1.37 6.21 -2.39 -0.01 1.36 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.26 6.32 -2.39 -0.02 1.24 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -67.36 292.52 -0.74 -68.11 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.22 Total: 18.03 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.19 Total: -24.49 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -6.82 Total: -108.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.67 Total: 47.31 kcal Total: -67.36 -0.74 -68.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227326321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.595 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds