Wall clock time and date at job start Mon Mar 30 2020 03:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.50698 * 109.47216 * 120.00239 * 2 1 3 5 5 H 1.07999 * 119.99999 * 119.99260 * 4 2 1 6 6 C 1.37876 * 119.99843 * 300.00427 * 4 2 1 7 7 N 1.31519 * 120.00018 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00229 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47427 * 90.00022 * 8 6 4 10 10 H 1.48507 * 109.47415 * 210.00360 * 8 6 4 11 11 H 1.48507 * 109.47269 * 330.00339 * 8 6 4 12 12 N 1.46903 * 109.47113 * 240.00011 * 2 1 3 13 13 C 1.46846 * 111.00156 * 301.18103 * 12 2 1 14 14 C 1.53033 * 109.52022 * 185.83847 * 13 12 2 15 15 C 1.53112 * 109.28084 * 300.81657 * 14 13 12 16 16 H 1.09005 * 109.57857 * 177.59098 * 15 14 13 17 17 C 1.53000 * 109.52390 * 297.75385 * 15 14 13 18 18 C 1.53125 * 109.15920 * 57.66059 * 15 14 13 19 19 C 1.46851 * 110.99527 * 65.38921 * 12 2 1 20 20 H 1.08998 * 109.46695 * 294.16403 * 19 12 2 21 21 C 1.52996 * 109.46250 * 54.14654 * 19 12 2 22 22 N 1.46907 * 109.46868 * 182.66173 * 21 19 12 23 23 H 1.09003 * 109.46857 * 299.99904 * 1 2 3 24 24 H 1.08991 * 109.46860 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46675 * 59.99742 * 1 2 3 26 26 H 0.96998 * 119.99845 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.45871 * 305.85575 * 13 12 2 28 28 H 1.08998 * 109.46399 * 65.81842 * 13 12 2 29 29 H 1.09006 * 109.50332 * 180.87553 * 14 13 12 30 30 H 1.08994 * 109.53643 * 60.78282 * 14 13 12 31 31 H 1.09001 * 109.47004 * 179.68398 * 17 15 14 32 32 H 1.09003 * 109.47036 * 299.67692 * 17 15 14 33 33 H 1.08998 * 109.47444 * 59.68460 * 17 15 14 34 34 H 1.09002 * 109.50138 * 182.40631 * 18 15 14 35 35 H 1.08998 * 109.50373 * 62.28470 * 18 15 14 36 36 H 1.09004 * 109.47308 * 302.65626 * 21 19 12 37 37 H 1.08996 * 109.47597 * 62.66129 * 21 19 12 38 38 H 1.00898 * 110.99876 * 65.44353 * 22 21 19 39 39 H 1.00899 * 110.99879 * 189.39566 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6925 -1.1995 13 6 1.5260 -2.0746 -1.2476 14 6 2.1699 -2.8068 -2.4271 15 6 1.8227 -2.0756 -3.7267 16 1 2.3141 -2.5684 -4.5656 17 6 0.3073 -2.0979 -3.9368 18 6 2.3048 -0.6253 -3.6315 19 6 1.6568 0.0438 -2.4171 20 1 0.5732 0.0390 -2.5351 21 6 2.1512 1.4874 -2.3063 22 7 1.7329 2.2409 -3.4961 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 1.9031 -0.5282 4.4375 27 1 1.7831 -2.5846 -0.3193 28 1 0.4430 -2.0693 -1.3709 29 1 1.7915 -3.8281 -2.4719 30 1 3.2520 -2.8252 -2.2978 31 1 0.0606 -1.5723 -4.8592 32 1 -0.0349 -3.1306 -4.0045 33 1 -0.1833 -1.6069 -3.0964 34 1 2.0225 -0.0878 -4.5368 35 1 3.3890 -0.6087 -3.5208 36 1 1.7260 1.9498 -1.4155 37 1 3.2388 1.4946 -2.2356 38 1 0.7282 2.3246 -3.5363 39 1 2.1727 3.1486 -3.5223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235289678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:59 Heat of formation + Delta-G solvation = 2.512837 kcal Electronic energy + Delta-G solvation = -17289.743372 eV Core-core repulsion = 14846.001793 eV Total energy + Delta-G solvation = -2443.741580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41576 -35.13304 -34.42354 -32.15359 -29.90332 -29.61053 -26.63997 -25.30670 -24.60687 -23.14426 -21.02428 -19.51772 -17.92684 -16.62878 -15.90847 -15.19688 -14.81767 -14.74833 -14.28464 -13.65718 -13.46038 -12.98881 -12.87574 -12.73356 -12.20695 -12.00308 -11.89164 -11.39266 -11.29930 -11.13091 -10.98027 -10.65901 -10.42089 -10.19741 -10.03624 -9.80768 -9.61082 -9.45850 -8.97268 -8.60120 -8.34081 -7.20706 -6.06678 -4.03837 3.23325 3.32231 3.35894 4.38179 4.54333 5.01265 5.15521 5.21957 5.27095 5.38992 5.53743 5.67174 5.79906 5.91656 5.94408 6.05292 6.07800 6.17214 6.21761 6.26076 6.29484 6.35250 6.47836 6.49731 6.57522 6.63156 6.67907 6.75666 6.88440 6.98778 7.23635 7.29428 7.56724 7.66500 8.03340 8.18354 8.69396 9.01698 9.55933 11.06500 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.010160 C = 0.008536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.298440 B = 2755.171959 C = 3279.295108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.177 3.823 3 H 0.043 0.957 4 C -0.500 4.500 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.271 1.271 12 N -0.515 5.515 13 C 0.063 3.937 14 C -0.113 4.113 15 C -0.095 4.095 16 H 0.061 0.939 17 C -0.148 4.148 18 C -0.093 4.093 19 C 0.087 3.913 20 H 0.033 0.967 21 C 0.061 3.939 22 N -0.849 5.849 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.088 0.912 28 H 0.025 0.975 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.334 0.666 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 1.848 -13.403 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.069 3.931 3 H 0.061 0.939 4 C -0.538 4.538 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.718 3.282 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.197 1.197 12 N -0.239 5.239 13 C -0.065 4.065 14 C -0.151 4.151 15 C -0.113 4.113 16 H 0.079 0.921 17 C -0.205 4.205 18 C -0.130 4.130 19 C -0.022 4.022 20 H 0.051 0.949 21 C -0.070 4.070 22 N -0.378 5.378 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.145 0.855 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.012 1.228 -13.581 13.784 hybrid contribution -2.028 1.562 0.995 2.746 sum -4.040 2.790 -12.586 13.510 Atomic orbital electron populations 1.22814 1.02074 1.00922 0.98590 1.19843 0.88443 0.95627 0.89196 0.93930 1.20974 1.31303 1.13684 0.87822 0.89938 1.24919 0.95915 0.96520 0.95898 1.69881 1.45840 1.40308 0.97831 0.86891 0.80584 0.84016 0.76744 1.20889 1.22476 1.19664 1.62035 1.59462 1.01478 1.00954 1.21998 0.95976 0.89901 0.98638 1.21664 1.01383 0.97716 0.94340 1.21179 0.95625 0.96872 0.97643 0.92101 1.21912 0.96399 1.00930 1.01270 1.21496 1.00329 0.93896 0.97329 1.21485 0.96775 0.92455 0.91518 0.94926 1.21950 1.01171 0.93726 0.90147 1.58661 1.12653 1.22816 1.43638 0.93905 0.92634 0.95539 0.92695 0.89395 0.95681 0.92615 0.91508 0.93307 0.93351 0.92377 0.91377 0.91947 0.94683 0.90448 0.85474 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.04 7.98 37.16 0.30 -3.75 16 2 C 0.18 4.11 1.56 -68.86 -0.11 4.00 16 3 H 0.04 1.03 4.90 -51.93 -0.25 0.78 16 4 C -0.50 -13.80 8.44 -34.44 -0.29 -14.09 16 5 H 0.08 2.49 7.03 -52.49 -0.37 2.12 16 6 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 8 Si 0.89 21.93 24.37 -169.99 -4.14 17.79 16 9 H -0.28 -6.84 6.87 56.52 0.39 -6.46 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.51 -10.49 4.47 -220.14 -0.98 -11.47 16 13 C 0.06 1.20 4.41 -3.84 -0.02 1.19 16 14 C -0.11 -1.80 5.60 -26.66 -0.15 -1.95 16 15 C -0.09 -1.35 3.22 -90.50 -0.29 -1.64 16 16 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.15 -1.98 8.61 37.16 0.32 -1.66 16 18 C -0.09 -1.41 4.73 -26.64 -0.13 -1.54 16 19 C 0.09 1.49 1.46 -67.72 -0.10 1.39 16 20 H 0.03 0.58 5.11 -51.93 -0.27 0.31 16 21 C 0.06 0.99 5.86 -3.82 -0.02 0.96 16 22 N -0.85 -10.95 8.95 -10.37 -0.09 -11.04 16 23 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 24 H 0.05 1.20 6.51 -51.93 -0.34 0.86 16 25 H 0.03 0.51 6.66 -51.93 -0.35 0.16 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.92 6.37 -51.93 -0.33 1.59 16 28 H 0.03 0.48 4.98 -51.93 -0.26 0.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.87 4.92 -51.93 -0.26 0.61 16 34 H 0.07 0.99 7.71 -51.93 -0.40 0.59 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.04 0.63 6.05 -51.93 -0.31 0.32 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.33 3.98 9.07 -39.29 -0.36 3.63 16 39 H 0.34 3.70 9.08 -39.29 -0.36 3.35 16 LS Contribution 276.53 15.07 4.17 4.17 Total: -1.00 -29.02 276.53 -7.02 -36.04 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.16 Total: 6.29 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.58 Total: -15.21 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.30 Total: -49.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.02 -7.02 -36.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235289678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.553 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds