Wall clock time and date at job start Mon Mar 30 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47071 * 2 1 4 4 C 1.50698 * 109.47216 * 120.00239 * 2 1 3 5 5 H 1.07999 * 119.99999 * 119.99260 * 4 2 1 6 6 C 1.37876 * 119.99843 * 300.00427 * 4 2 1 7 7 N 1.31519 * 120.00018 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00229 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47427 * 90.00022 * 8 6 4 10 10 H 1.48507 * 109.47415 * 210.00360 * 8 6 4 11 11 H 1.48507 * 109.47269 * 330.00339 * 8 6 4 12 12 N 1.46903 * 109.47113 * 240.00011 * 2 1 3 13 13 C 1.46846 * 111.00156 * 301.18103 * 12 2 1 14 14 C 1.53033 * 109.52022 * 185.83847 * 13 12 2 15 15 C 1.53112 * 109.28084 * 300.81657 * 14 13 12 16 16 H 1.09005 * 109.57857 * 177.59098 * 15 14 13 17 17 C 1.53000 * 109.52390 * 297.75385 * 15 14 13 18 18 C 1.53125 * 109.15920 * 57.66059 * 15 14 13 19 19 C 1.46851 * 110.99527 * 65.38921 * 12 2 1 20 20 H 1.08998 * 109.46695 * 294.16403 * 19 12 2 21 21 C 1.52996 * 109.46250 * 54.14654 * 19 12 2 22 22 N 1.46907 * 109.46868 * 182.66173 * 21 19 12 23 23 H 1.09003 * 109.46857 * 299.99904 * 1 2 3 24 24 H 1.08991 * 109.46860 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46675 * 59.99742 * 1 2 3 26 26 H 0.96998 * 119.99845 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.45871 * 305.85575 * 13 12 2 28 28 H 1.08998 * 109.46399 * 65.81842 * 13 12 2 29 29 H 1.09006 * 109.50332 * 180.87553 * 14 13 12 30 30 H 1.08994 * 109.53643 * 60.78282 * 14 13 12 31 31 H 1.09001 * 109.47004 * 179.68398 * 17 15 14 32 32 H 1.09003 * 109.47036 * 299.67692 * 17 15 14 33 33 H 1.08998 * 109.47444 * 59.68460 * 17 15 14 34 34 H 1.09002 * 109.50138 * 182.40631 * 18 15 14 35 35 H 1.08998 * 109.50373 * 62.28470 * 18 15 14 36 36 H 1.09004 * 109.47308 * 302.65626 * 21 19 12 37 37 H 1.08996 * 109.47597 * 62.66129 * 21 19 12 38 38 H 1.00898 * 110.99876 * 65.44353 * 22 21 19 39 39 H 1.00899 * 110.99879 * 189.39566 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6258 1.2796 2.6542 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6925 -1.1995 13 6 1.5260 -2.0746 -1.2476 14 6 2.1699 -2.8068 -2.4271 15 6 1.8227 -2.0756 -3.7267 16 1 2.3141 -2.5684 -4.5656 17 6 0.3073 -2.0979 -3.9368 18 6 2.3048 -0.6253 -3.6315 19 6 1.6568 0.0438 -2.4171 20 1 0.5732 0.0390 -2.5351 21 6 2.1512 1.4874 -2.3063 22 7 1.7329 2.2409 -3.4961 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 1.9031 -0.5282 4.4375 27 1 1.7831 -2.5846 -0.3193 28 1 0.4430 -2.0693 -1.3709 29 1 1.7915 -3.8281 -2.4719 30 1 3.2520 -2.8252 -2.2978 31 1 0.0606 -1.5723 -4.8592 32 1 -0.0349 -3.1306 -4.0045 33 1 -0.1833 -1.6069 -3.0964 34 1 2.0225 -0.0878 -4.5368 35 1 3.3890 -0.6087 -3.5208 36 1 1.7260 1.9498 -1.4155 37 1 3.2388 1.4946 -2.2356 38 1 0.7282 2.3246 -3.5363 39 1 2.1727 3.1486 -3.5223 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235289678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:58 Heat of formation + Delta-G solvation = -19.835006 kcal Electronic energy + Delta-G solvation = -17290.712448 eV Core-core repulsion = 14846.001793 eV Total energy + Delta-G solvation = -2444.710655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.86717 -36.68017 -35.71957 -34.16313 -31.28241 -31.19448 -27.90163 -27.27941 -25.92201 -24.68617 -22.56041 -21.07821 -19.28296 -18.62835 -17.38383 -16.88131 -16.24191 -16.11072 -15.57585 -15.28729 -15.01298 -14.51640 -14.38379 -14.07254 -13.96415 -13.65878 -13.26140 -13.07013 -12.75009 -12.58617 -12.31264 -12.30394 -12.02361 -11.76617 -11.53810 -11.35461 -11.23167 -10.94965 -10.83420 -10.71133 -9.52561 -8.80698 -8.27978 -6.29319 1.26085 1.31069 1.41278 2.29728 3.05187 3.15518 3.78144 3.91768 4.04241 4.11152 4.21921 4.38880 4.44846 4.49709 4.54282 4.58580 4.63467 4.70680 4.82895 4.86961 4.89465 5.02410 5.09177 5.17498 5.19890 5.25653 5.35634 5.41859 5.42928 5.55559 5.62733 5.67740 6.09224 6.20558 6.48693 6.64972 6.76414 6.82208 7.34776 8.88956 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.010160 C = 0.008536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.298440 B = 2755.171959 C = 3279.295108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.182 3.818 3 H 0.039 0.961 4 C -0.499 4.499 5 H 0.039 0.961 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.271 1.271 10 H -0.299 1.299 11 H -0.251 1.251 12 N -0.530 5.530 13 C 0.067 3.933 14 C -0.108 4.108 15 C -0.091 4.091 16 H 0.084 0.916 17 C -0.144 4.144 18 C -0.086 4.086 19 C 0.088 3.912 20 H 0.036 0.964 21 C 0.067 3.933 22 N -0.839 5.839 23 H 0.034 0.966 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.264 0.736 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.066 0.934 38 H 0.344 0.656 39 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 3.051 -16.044 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.073 3.927 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.226 1.226 11 H -0.175 1.175 12 N -0.254 5.254 13 C -0.061 4.061 14 C -0.146 4.146 15 C -0.109 4.109 16 H 0.102 0.898 17 C -0.201 4.201 18 C -0.124 4.124 19 C -0.021 4.021 20 H 0.054 0.946 21 C -0.064 4.064 22 N -0.369 5.369 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.084 0.916 38 H 0.156 0.844 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.374 2.440 -16.262 16.787 hybrid contribution -1.526 1.110 1.772 2.588 sum -4.900 3.550 -14.490 15.703 Atomic orbital electron populations 1.22667 1.00503 1.00970 0.99522 1.19614 0.89485 0.94871 0.88697 0.94320 1.21217 1.30123 1.12378 0.90030 0.94292 1.25745 0.97530 0.99844 0.95459 1.70038 1.47995 1.42515 0.98478 0.85861 0.78994 0.80308 0.77163 1.19711 1.22633 1.17545 1.61953 1.59987 1.02101 1.01395 1.21911 0.96448 0.89445 0.98337 1.21626 1.00431 0.98522 0.93996 1.21184 0.96716 0.95979 0.97039 0.89808 1.21868 0.95141 1.01793 1.01294 1.21456 0.99489 0.94653 0.96763 1.21576 0.97141 0.92821 0.90542 0.94607 1.21760 1.00358 0.93537 0.90752 1.58578 1.13515 1.23528 1.41325 0.94727 0.93110 0.92620 0.92666 0.93460 0.95278 0.90876 0.92585 0.91588 0.92202 0.94167 0.89755 0.93003 0.96548 0.91561 0.84394 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.49 7.98 71.98 0.57 -6.92 16 2 C 0.18 8.44 1.56 44.17 0.07 8.51 16 3 H 0.04 1.85 4.90 -2.39 -0.01 1.84 16 4 C -0.50 -28.55 8.44 25.60 0.22 -28.33 16 5 H 0.04 2.51 7.03 -2.91 -0.02 2.49 16 6 C 0.01 0.64 5.45 84.65 0.46 1.10 16 7 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 8 Si 0.95 45.26 24.37 68.60 1.67 46.93 16 9 H -0.27 -12.37 6.87 99.48 0.68 -11.69 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 12 N -0.53 -21.51 4.47 -850.38 -3.80 -25.31 16 13 C 0.07 2.57 4.41 86.32 0.38 2.95 16 14 C -0.11 -3.31 5.60 30.64 0.17 -3.13 16 15 C -0.09 -2.31 3.22 -10.71 -0.03 -2.35 16 16 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 17 C -0.14 -3.34 8.61 71.98 0.62 -2.72 16 18 C -0.09 -2.39 4.73 30.65 0.15 -2.24 16 19 C 0.09 2.84 1.46 44.94 0.07 2.91 16 20 H 0.04 1.16 5.11 -2.39 -0.01 1.15 16 21 C 0.07 2.06 5.86 86.30 0.51 2.56 16 22 N -0.84 -18.98 8.95 -186.71 -1.67 -20.65 16 23 H 0.03 1.50 3.27 -2.39 -0.01 1.50 16 24 H 0.05 2.15 6.51 -2.39 -0.02 2.14 16 25 H 0.05 2.00 6.66 -2.39 -0.02 1.98 16 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.05 2.18 6.37 -2.39 -0.02 2.17 16 28 H 0.03 1.09 4.98 -2.39 -0.01 1.08 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.08 4.92 -2.39 -0.01 1.06 16 34 H 0.08 2.12 7.71 -2.39 -0.02 2.10 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.02 0.56 6.05 -2.38 -0.01 0.55 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.34 6.93 9.07 -89.70 -0.81 6.12 16 39 H 0.35 6.61 9.08 -89.69 -0.81 5.79 16 Total: -1.00 -64.20 276.53 -0.97 -65.17 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.65 Total: 20.99 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 3.17 Total: -27.66 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -5.17 Total: -105.43 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -64.20 -0.97 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235289678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.339 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds