Wall clock time and date at job start Mon Mar 30 2020 03:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46964 * 2 1 4 4 C 1.50699 * 109.47349 * 240.00354 * 2 1 3 5 5 H 1.07999 * 120.00032 * 239.99852 * 4 2 1 6 6 C 1.37877 * 120.00199 * 59.99821 * 4 2 1 7 7 N 1.31512 * 119.99793 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00218 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47294 * 90.00083 * 8 6 4 10 10 H 1.48505 * 109.47348 * 210.00043 * 8 6 4 11 11 H 1.48506 * 109.47274 * 330.00077 * 8 6 4 12 12 N 1.46902 * 109.47190 * 119.99817 * 2 1 3 13 13 C 1.48068 * 110.99425 * 60.29844 * 12 2 1 14 14 C 1.50743 * 112.93439 * 192.21630 * 13 12 2 15 15 C 1.54516 * 108.94240 * 92.64766 * 14 13 12 16 16 N 1.40087 * 111.51315 * 283.99015 * 15 14 13 17 17 C 1.46893 * 111.00249 * 188.15013 * 16 15 14 18 18 C 1.47689 * 114.56763 * 61.44869 * 16 15 14 19 19 C 1.47739 * 111.00017 * 292.69639 * 12 2 1 20 20 H 1.09007 * 108.98933 * 205.48335 * 19 12 2 21 21 C 1.52995 * 108.99313 * 324.31106 * 19 12 2 22 22 H 1.09004 * 109.47150 * 184.26783 * 1 2 3 23 23 H 1.08999 * 109.47517 * 304.26938 * 1 2 3 24 24 H 1.09002 * 109.47111 * 64.27187 * 1 2 3 25 25 H 0.97004 * 120.00547 * 179.97438 * 7 6 4 26 26 H 1.09002 * 108.79638 * 71.32759 * 13 12 2 27 27 H 1.08998 * 108.70262 * 313.04143 * 13 12 2 28 28 H 1.09001 * 109.56148 * 332.81328 * 14 13 12 29 29 H 1.09001 * 109.56311 * 212.48132 * 14 13 12 30 30 H 1.09005 * 109.07414 * 163.46467 * 15 14 13 31 31 H 1.08998 * 109.07463 * 44.51341 * 15 14 13 32 32 H 1.09006 * 109.47392 * 56.04313 * 17 16 15 33 33 H 1.08995 * 109.47423 * 296.04631 * 17 16 15 34 34 H 1.08998 * 109.47265 * 176.04798 * 17 16 15 35 35 H 1.08999 * 109.73746 * 38.34204 * 18 16 15 36 36 H 1.09005 * 109.73223 * 159.03898 * 18 16 15 37 37 H 1.08996 * 109.47028 * 67.11808 * 21 19 12 38 38 H 1.09007 * 109.47069 * 187.11849 * 21 19 12 39 39 H 1.09002 * 109.47109 * 307.11393 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0079 9 1 1.3429 -2.1614 -4.4119 10 1 2.4867 -0.1411 -5.1123 11 1 3.6294 -1.7581 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 1.5507 -2.0966 1.2300 14 6 1.7735 -2.7614 2.5645 15 6 0.5038 -2.5903 3.4283 16 7 0.4043 -1.2914 3.9436 17 6 -0.6943 -1.1927 4.9138 18 6 0.3041 -0.2309 2.9207 19 6 1.6944 0.0713 2.4216 20 1 2.4129 -0.1834 3.2008 21 6 1.8000 1.5669 2.1170 22 1 -0.3634 -1.0248 0.0765 23 1 -0.3634 0.5786 0.8492 24 1 -0.3633 0.4461 -0.9258 25 1 0.7095 1.1620 -3.4843 26 1 2.0820 -2.6610 0.4636 27 1 0.4849 -2.1141 1.0027 28 1 2.6218 -2.2965 3.0667 29 1 1.9726 -3.8226 2.4149 30 1 0.5371 -3.2999 4.2550 31 1 -0.3739 -2.7989 2.8166 32 1 -0.5507 -1.9320 5.7019 33 1 -1.6423 -1.3790 4.4093 34 1 -0.7051 -0.1939 5.3500 35 1 -0.3172 -0.5746 2.0938 36 1 -0.1317 0.6657 3.3616 37 1 1.0149 1.8513 1.4165 38 1 1.6862 2.1347 3.0405 39 1 2.7743 1.7802 1.6771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235425555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:48 Heat of formation + Delta-G solvation = 28.270232 kcal Electronic energy + Delta-G solvation = -17376.491436 eV Core-core repulsion = 14933.866781 eV Total energy + Delta-G solvation = -2442.624655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63272 -36.22367 -32.89846 -32.76770 -29.99536 -27.76003 -26.85298 -25.59348 -25.00607 -22.50676 -20.86546 -20.32910 -18.14322 -16.31041 -15.65924 -15.31954 -15.07229 -14.69352 -14.01776 -13.68042 -13.12614 -12.78734 -12.51328 -12.32790 -12.13944 -11.79151 -11.48628 -11.34759 -10.94301 -10.85814 -10.77981 -10.57176 -10.49851 -10.45296 -10.17945 -10.15124 -9.74947 -9.40597 -8.72169 -8.30800 -7.93608 -6.90301 -5.96497 -3.99634 3.32540 3.39311 3.43659 4.21783 4.44914 4.95599 5.17239 5.34452 5.39204 5.39816 5.53871 5.66573 5.77822 5.78696 5.90550 5.96901 6.06237 6.17582 6.20751 6.30119 6.36398 6.47099 6.68055 6.70814 6.78305 6.89835 6.93988 7.02335 7.22064 7.35675 7.56626 7.65406 7.81697 7.92960 8.23968 8.48815 8.73531 9.07397 9.65283 11.10079 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039212 B = 0.008448 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.889485 B = 3313.484336 C = 3613.543121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.207 3.793 3 H 0.051 0.949 4 C -0.498 4.498 5 H 0.060 0.940 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.064 3.936 14 C -0.122 4.122 15 C 0.073 3.927 16 N -0.558 5.558 17 C 0.032 3.968 18 C 0.028 3.972 19 C 0.090 3.910 20 H 0.076 0.924 21 C -0.149 4.149 22 H 0.026 0.974 23 H 0.015 0.985 24 H 0.086 0.914 25 H 0.259 0.741 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -3.138 11.146 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.101 3.899 3 H 0.069 0.931 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.064 4.064 14 C -0.160 4.160 15 C -0.056 4.056 16 N -0.283 5.283 17 C -0.116 4.116 18 C -0.100 4.100 19 C -0.019 4.019 20 H 0.094 0.906 21 C -0.207 4.207 22 H 0.045 0.955 23 H 0.034 0.966 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.339 -2.979 11.192 11.659 hybrid contribution -1.488 -0.595 -1.272 2.046 sum -2.826 -3.574 9.920 10.917 Atomic orbital electron populations 1.22628 1.01548 0.98245 1.01290 1.19403 0.89346 0.95271 0.85905 0.93098 1.21200 1.30188 1.12351 0.89905 0.92140 1.24915 0.95373 0.95161 0.98910 1.69877 1.37322 1.23098 1.23229 0.86571 0.79238 0.79291 0.82737 1.20972 1.21348 1.19879 1.62440 1.60621 1.00756 1.02149 1.21705 0.98671 0.90359 0.95654 1.21642 0.97747 1.00082 0.96508 1.21068 0.97329 0.89715 0.97526 1.59061 1.45026 1.04818 1.19350 1.22301 0.91732 1.02033 0.95503 1.22986 1.00096 0.93399 0.93527 1.21392 0.93767 0.93411 0.93357 0.90620 1.22091 1.03132 0.95013 1.00442 0.95527 0.96596 0.89500 0.93136 0.91035 0.95171 0.90354 0.91613 0.91931 0.96737 0.91997 0.96253 0.91734 0.92042 0.91549 0.91780 0.93771 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.26 7.10 37.16 0.26 -4.00 16 2 C 0.21 5.12 1.81 -68.87 -0.12 4.99 16 3 H 0.05 1.37 5.74 -51.93 -0.30 1.07 16 4 C -0.50 -13.63 8.05 -34.44 -0.28 -13.90 16 5 H 0.06 1.67 6.70 -52.49 -0.35 1.32 16 6 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 7 N -0.90 -25.45 11.30 55.43 0.63 -24.83 16 8 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.53 4.71 -221.15 -1.04 -12.57 16 13 C 0.06 1.27 4.39 -4.31 -0.02 1.25 16 14 C -0.12 -1.97 5.68 -27.07 -0.15 -2.12 16 15 C 0.07 1.10 4.95 -6.55 -0.03 1.07 16 16 N -0.56 -8.55 4.23 -248.02 -1.05 -9.60 16 17 C 0.03 0.40 9.46 60.06 0.57 0.97 16 18 C 0.03 0.47 3.87 -4.51 -0.02 0.45 16 19 C 0.09 1.67 2.33 -68.37 -0.16 1.51 16 20 H 0.08 1.41 7.19 -51.93 -0.37 1.03 16 21 C -0.15 -2.68 7.54 37.16 0.28 -2.40 16 22 H 0.03 0.63 5.74 -51.93 -0.30 0.33 16 23 H 0.02 0.34 4.68 -51.93 -0.24 0.09 16 24 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.07 1.53 6.85 -51.93 -0.36 1.17 16 27 H 0.03 0.64 4.19 -51.93 -0.22 0.42 16 28 H 0.08 1.32 7.19 -51.93 -0.37 0.95 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.82 7.91 -51.93 -0.41 0.41 16 31 H 0.01 0.23 7.60 -51.93 -0.39 -0.16 16 32 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 35 H 0.06 1.18 3.92 -51.93 -0.20 0.98 16 36 H 0.07 1.05 7.30 -51.93 -0.38 0.67 16 37 H 0.06 1.25 5.49 -51.93 -0.28 0.96 16 38 H 0.04 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.06 1.20 7.80 -51.93 -0.41 0.79 16 LS Contribution 274.49 15.07 4.14 4.14 Total: -1.00 -27.91 274.49 -8.24 -36.15 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.13 Total: 0.94 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 0.23 Total: -10.70 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -1.46 Total: -46.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.91 -8.24 -36.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235425555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.424 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds