Wall clock time and date at job start Mon Mar 30 2020 03:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46964 * 2 1 4 4 C 1.50699 * 109.47349 * 240.00354 * 2 1 3 5 5 H 1.07999 * 120.00032 * 239.99852 * 4 2 1 6 6 C 1.37877 * 120.00199 * 59.99821 * 4 2 1 7 7 N 1.31512 * 119.99793 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00218 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47294 * 90.00083 * 8 6 4 10 10 H 1.48505 * 109.47348 * 210.00043 * 8 6 4 11 11 H 1.48506 * 109.47274 * 330.00077 * 8 6 4 12 12 N 1.46902 * 109.47190 * 119.99817 * 2 1 3 13 13 C 1.48068 * 110.99425 * 60.29844 * 12 2 1 14 14 C 1.50743 * 112.93439 * 192.21630 * 13 12 2 15 15 C 1.54516 * 108.94240 * 92.64766 * 14 13 12 16 16 N 1.40087 * 111.51315 * 283.99015 * 15 14 13 17 17 C 1.46893 * 111.00249 * 188.15013 * 16 15 14 18 18 C 1.47689 * 114.56763 * 61.44869 * 16 15 14 19 19 C 1.47739 * 111.00017 * 292.69639 * 12 2 1 20 20 H 1.09007 * 108.98933 * 205.48335 * 19 12 2 21 21 C 1.52995 * 108.99313 * 324.31106 * 19 12 2 22 22 H 1.09004 * 109.47150 * 184.26783 * 1 2 3 23 23 H 1.08999 * 109.47517 * 304.26938 * 1 2 3 24 24 H 1.09002 * 109.47111 * 64.27187 * 1 2 3 25 25 H 0.97004 * 120.00547 * 179.97438 * 7 6 4 26 26 H 1.09002 * 108.79638 * 71.32759 * 13 12 2 27 27 H 1.08998 * 108.70262 * 313.04143 * 13 12 2 28 28 H 1.09001 * 109.56148 * 332.81328 * 14 13 12 29 29 H 1.09001 * 109.56311 * 212.48132 * 14 13 12 30 30 H 1.09005 * 109.07414 * 163.46467 * 15 14 13 31 31 H 1.08998 * 109.07463 * 44.51341 * 15 14 13 32 32 H 1.09006 * 109.47392 * 56.04313 * 17 16 15 33 33 H 1.08995 * 109.47423 * 296.04631 * 17 16 15 34 34 H 1.08998 * 109.47265 * 176.04798 * 17 16 15 35 35 H 1.08999 * 109.73746 * 38.34204 * 18 16 15 36 36 H 1.09005 * 109.73223 * 159.03898 * 18 16 15 37 37 H 1.08996 * 109.47028 * 67.11808 * 21 19 12 38 38 H 1.09007 * 109.47069 * 187.11849 * 21 19 12 39 39 H 1.09002 * 109.47109 * 307.11393 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0079 9 1 1.3429 -2.1614 -4.4119 10 1 2.4867 -0.1411 -5.1123 11 1 3.6294 -1.7581 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 1.5507 -2.0966 1.2300 14 6 1.7735 -2.7614 2.5645 15 6 0.5038 -2.5903 3.4283 16 7 0.4043 -1.2914 3.9436 17 6 -0.6943 -1.1927 4.9138 18 6 0.3041 -0.2309 2.9207 19 6 1.6944 0.0713 2.4216 20 1 2.4129 -0.1834 3.2008 21 6 1.8000 1.5669 2.1170 22 1 -0.3634 -1.0248 0.0765 23 1 -0.3634 0.5786 0.8492 24 1 -0.3633 0.4461 -0.9258 25 1 0.7095 1.1620 -3.4843 26 1 2.0820 -2.6610 0.4636 27 1 0.4849 -2.1141 1.0027 28 1 2.6218 -2.2965 3.0667 29 1 1.9726 -3.8226 2.4149 30 1 0.5371 -3.2999 4.2550 31 1 -0.3739 -2.7989 2.8166 32 1 -0.5507 -1.9320 5.7019 33 1 -1.6423 -1.3790 4.4093 34 1 -0.7051 -0.1939 5.3500 35 1 -0.3172 -0.5746 2.0938 36 1 -0.1317 0.6657 3.3616 37 1 1.0149 1.8513 1.4165 38 1 1.6862 2.1347 3.0405 39 1 2.7743 1.7802 1.6771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235425555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:48 Heat of formation + Delta-G solvation = 9.164363 kcal Electronic energy + Delta-G solvation = -17377.319929 eV Core-core repulsion = 14933.866781 eV Total energy + Delta-G solvation = -2443.453148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09489 -37.71121 -34.84042 -34.19845 -31.74650 -29.35405 -28.24538 -27.17697 -26.82005 -23.89278 -22.63250 -21.66865 -19.85094 -18.19659 -17.05521 -16.85389 -16.56974 -16.39963 -15.64143 -15.21631 -14.72322 -14.29137 -14.02653 -13.82156 -13.43405 -13.32462 -13.00773 -12.86626 -12.75130 -12.59243 -12.43455 -12.29183 -12.14023 -11.99073 -11.87072 -11.79348 -11.30637 -11.15020 -10.69635 -10.39270 -9.19321 -8.60109 -8.08090 -6.18041 1.40446 1.41804 1.52198 2.43647 3.03378 3.20334 3.36237 3.95240 4.08061 4.13437 4.25828 4.43754 4.49881 4.59692 4.62758 4.67486 4.73337 4.77327 4.82038 4.86513 4.99687 5.01209 5.03182 5.06579 5.17021 5.22973 5.32652 5.42279 5.48291 5.64338 5.77026 5.89109 6.15801 6.28130 6.44309 6.60715 6.91914 6.98911 7.51163 8.97163 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039212 B = 0.008448 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.889485 B = 3313.484336 C = 3613.543121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.026 0.974 4 C -0.516 4.516 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.548 5.548 13 C 0.070 3.930 14 C -0.114 4.114 15 C 0.076 3.924 16 N -0.562 5.562 17 C 0.031 3.969 18 C 0.035 3.965 19 C 0.091 3.909 20 H 0.082 0.918 21 C -0.143 4.143 22 H 0.021 0.979 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.260 0.740 26 H 0.049 0.951 27 H 0.014 0.986 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.003 0.997 32 H 0.082 0.918 33 H 0.017 0.983 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 -3.931 12.779 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.044 0.956 4 C -0.554 4.554 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.273 5.273 13 C -0.058 4.058 14 C -0.152 4.152 15 C -0.054 4.054 16 N -0.286 5.286 17 C -0.116 4.116 18 C -0.093 4.093 19 C -0.018 4.018 20 H 0.100 0.900 21 C -0.201 4.201 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.021 0.979 32 H 0.101 0.899 33 H 0.036 0.964 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.396 -3.780 12.847 13.465 hybrid contribution -1.457 -0.343 -1.723 2.283 sum -2.854 -4.123 11.124 12.202 Atomic orbital electron populations 1.22399 1.01090 0.97852 1.00447 1.19114 0.89454 0.93942 0.86679 0.95579 1.21491 1.30242 1.12295 0.91410 0.93075 1.25637 0.95580 0.95861 1.01621 1.70002 1.38059 1.24133 1.23786 0.85621 0.78753 0.78291 0.79341 1.20442 1.20884 1.19557 1.62318 1.61024 1.01627 1.02295 1.21672 0.97086 0.89514 0.97500 1.21596 0.98404 1.00873 0.94290 1.21074 0.95886 0.90324 0.98094 1.59091 1.46394 1.04329 1.18816 1.22398 0.90549 1.03520 0.95117 1.22766 0.98294 0.94723 0.93499 1.21442 0.95074 0.93201 0.92040 0.89995 1.22021 1.01456 0.95199 1.01387 0.96016 0.94646 0.92504 0.93120 0.93287 0.96763 0.90716 0.89397 0.88989 0.97907 0.89888 0.96426 0.90633 0.94533 0.90020 0.93823 0.90452 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.78 7.10 71.98 0.51 -7.27 16 2 C 0.22 10.92 1.81 44.17 0.08 11.00 16 3 H 0.03 1.46 5.74 -2.38 -0.01 1.45 16 4 C -0.52 -28.92 8.05 25.60 0.21 -28.71 16 5 H 0.05 2.89 6.70 -2.91 -0.02 2.88 16 6 C 0.01 0.62 5.29 84.65 0.45 1.07 16 7 N -0.92 -53.34 11.30 21.45 0.24 -53.10 16 8 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.55 -23.78 4.71 -853.59 -4.02 -27.81 16 13 C 0.07 2.79 4.39 85.35 0.38 3.16 16 14 C -0.11 -3.47 5.68 30.38 0.17 -3.30 16 15 C 0.08 2.07 4.95 88.05 0.44 2.51 16 16 N -0.56 -15.62 4.23 -938.59 -3.97 -19.59 16 17 C 0.03 0.67 9.46 127.69 1.21 1.88 16 18 C 0.04 1.15 3.87 85.43 0.33 1.48 16 19 C 0.09 3.29 2.33 44.03 0.10 3.39 16 20 H 0.08 2.89 7.19 -2.38 -0.02 2.88 16 21 C -0.14 -5.04 7.54 71.98 0.54 -4.49 16 22 H 0.02 1.04 5.74 -2.38 -0.01 1.03 16 23 H 0.03 1.55 4.68 -2.39 -0.01 1.54 16 24 H 0.06 3.13 5.97 -2.39 -0.01 3.11 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.60 16 26 H 0.05 2.13 6.85 -2.39 -0.02 2.11 16 27 H 0.01 0.61 4.19 -2.39 -0.01 0.60 16 28 H 0.07 2.37 7.19 -2.39 -0.02 2.35 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.09 2.03 7.91 -2.38 -0.02 2.01 16 31 H 0.00 0.09 7.60 -2.39 -0.02 0.07 16 32 H 0.08 1.45 7.98 -2.38 -0.02 1.43 16 33 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.07 1.46 7.95 -2.39 -0.02 1.44 16 35 H 0.04 1.38 3.92 -2.39 -0.01 1.37 16 36 H 0.08 2.39 7.30 -2.38 -0.02 2.37 16 37 H 0.04 1.70 5.49 -2.39 -0.01 1.69 16 38 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.05 1.82 7.80 -2.39 -0.02 1.80 16 Total: -1.00 -60.37 274.49 -0.29 -60.66 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.03 Total: 12.55 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 4.41 Total: -19.29 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -7.75 Total: -100.49 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.37 -0.29 -60.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235425555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.825 kcal (2) G-P(sol) polarization free energy of solvation -60.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds