Wall clock time and date at job start Mon Mar 30 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46846 * 110.99881 * 59.21204 * 12 2 1 14 14 C 1.53040 * 109.52470 * 174.16150 * 13 12 2 15 15 H 1.08999 * 109.53438 * 299.21926 * 14 13 12 16 16 C 1.52998 * 109.50567 * 179.11784 * 14 13 12 17 17 N 1.46903 * 109.47063 * 175.19781 * 16 14 13 18 18 C 1.53118 * 109.27870 * 59.17603 * 14 13 12 19 19 C 1.53124 * 109.16187 * 302.35125 * 18 14 13 20 20 C 1.46848 * 111.00160 * 295.00149 * 12 2 1 21 21 H 1.09003 * 109.46224 * 65.82099 * 20 12 2 22 22 C 1.53005 * 109.45955 * 305.84285 * 20 12 2 23 23 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46302 * 294.17444 * 13 12 2 28 28 H 1.08994 * 109.46393 * 54.14031 * 13 12 2 29 29 H 1.09004 * 109.47042 * 295.19278 * 16 14 13 30 30 H 1.08995 * 109.47051 * 55.19365 * 16 14 13 31 31 H 1.00895 * 110.99843 * 180.02562 * 17 16 14 32 32 H 1.00900 * 110.99383 * 303.95216 * 17 16 14 33 33 H 1.09002 * 109.52539 * 182.44483 * 18 14 13 34 34 H 1.08993 * 109.52619 * 62.25394 * 18 14 13 35 35 H 1.09008 * 109.49730 * 297.71039 * 19 18 14 36 36 H 1.08995 * 109.50815 * 177.59965 * 19 18 14 37 37 H 1.09002 * 109.47009 * 60.00100 * 22 20 12 38 38 H 1.09000 * 109.46853 * 179.97438 * 22 20 12 39 39 H 1.08996 * 109.47379 * 300.00263 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0196 -0.6925 1.1995 13 6 1.5334 -2.0774 1.2430 14 6 2.1775 -2.8089 2.4229 15 1 3.2601 -2.8209 2.2971 16 6 1.6539 -4.2453 2.4808 17 7 2.3566 -4.9802 3.5410 18 6 1.8220 -2.0823 3.7230 19 6 2.2963 -0.6292 3.6326 20 6 1.6487 0.0390 2.4177 21 1 0.5648 0.0281 2.5320 22 6 2.1358 1.4856 2.3119 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7043 1.1577 -3.4845 27 1 0.4500 -2.0783 1.3628 28 1 1.7963 -2.5839 0.3144 29 1 0.5849 -4.2340 2.6939 30 1 1.8283 -4.7345 1.5226 31 1 2.0286 -5.9326 3.5992 32 1 3.3554 -4.9500 3.4009 33 1 2.3142 -2.5746 4.5618 34 1 0.7421 -2.1045 3.8692 35 1 3.3808 -0.6065 3.5255 36 1 2.0082 -0.0953 4.5382 37 1 1.6741 1.9620 1.4470 38 1 1.8602 2.0287 3.2158 39 1 3.2197 1.4966 2.1971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251526490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:28 Heat of formation + Delta-G solvation = -10.781191 kcal Electronic energy + Delta-G solvation = -16954.881761 eV Core-core repulsion = 14510.563709 eV Total energy + Delta-G solvation = -2444.318052 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.99008 -35.59077 -33.65380 -31.65548 -31.32536 -28.15432 -26.96181 -25.18840 -23.49026 -22.98911 -20.95464 -19.73455 -18.33987 -16.21543 -15.91483 -14.85308 -14.64885 -14.43847 -13.96709 -13.95417 -13.48117 -13.12002 -12.56170 -12.22661 -11.96584 -11.56792 -11.32658 -11.22997 -11.02558 -10.96975 -10.77063 -10.68301 -10.36660 -10.16847 -10.02530 -10.02102 -9.73736 -9.21719 -8.76300 -8.57156 -8.32586 -7.01708 -5.98569 -4.01501 3.30064 3.38085 3.42160 4.42508 4.63422 4.94905 5.29180 5.32643 5.35650 5.42217 5.60139 5.80482 5.85135 5.98209 6.08188 6.15211 6.24030 6.27754 6.31486 6.49605 6.51143 6.65561 6.70774 6.76494 6.83361 6.92202 6.94653 6.97001 7.19112 7.22642 7.48399 7.60581 7.77823 7.89380 8.22359 8.47469 8.69649 9.05298 9.63229 11.08529 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.009121 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.099640 B = 3069.070202 C = 3838.865214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.207 3.793 3 H 0.048 0.952 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.525 5.525 13 C 0.070 3.930 14 C -0.084 4.084 15 H 0.070 0.930 16 C 0.066 3.934 17 N -0.850 5.850 18 C -0.101 4.101 19 C -0.111 4.111 20 C 0.079 3.921 21 H 0.030 0.970 22 C -0.144 4.144 23 H 0.086 0.914 24 H 0.027 0.973 25 H 0.007 0.993 26 H 0.259 0.741 27 H 0.022 0.978 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.335 0.665 32 H 0.338 0.662 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -5.900 9.985 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.101 3.899 3 H 0.065 0.935 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.250 5.250 13 C -0.059 4.059 14 C -0.103 4.103 15 H 0.089 0.911 16 C -0.065 4.065 17 N -0.378 5.378 18 C -0.139 4.139 19 C -0.149 4.149 20 C -0.030 4.030 21 H 0.047 0.953 22 C -0.202 4.202 23 H 0.105 0.895 24 H 0.046 0.954 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.320 -5.245 10.306 11.639 hybrid contribution -0.379 -1.005 -1.705 2.015 sum 0.941 -6.251 8.601 10.674 Atomic orbital electron populations 1.22393 1.01141 0.99154 1.00409 1.19370 0.89560 0.95076 0.85897 0.93472 1.21187 1.30119 1.12467 0.89813 0.92050 1.24924 0.95330 0.95153 0.98930 1.69897 1.37075 1.23287 1.23164 0.86510 0.78527 0.79661 0.83116 1.19836 1.21256 1.21089 1.62228 1.59660 1.01035 1.02049 1.21897 0.95910 0.90723 0.97321 1.21241 1.00666 0.92686 0.95744 0.91109 1.21820 0.98495 0.94384 0.91842 1.58744 1.09522 1.18982 1.50578 1.21459 1.00100 0.94969 0.97338 1.21651 1.00931 0.95526 0.96801 1.21503 0.96530 0.93661 0.91313 0.95264 1.21878 1.01846 0.95534 1.00898 0.89494 0.95402 0.97364 0.93140 0.95980 0.90171 0.91450 0.95509 0.85345 0.84977 0.91760 0.93240 0.91746 0.92834 0.91762 0.93763 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.28 37.16 0.31 -3.90 16 2 C 0.21 5.18 1.96 -68.86 -0.13 5.04 16 3 H 0.05 1.29 5.92 -51.93 -0.31 0.98 16 4 C -0.50 -13.55 7.85 -34.44 -0.27 -13.82 16 5 H 0.06 1.68 6.77 -52.49 -0.36 1.33 16 6 C 0.06 1.58 5.31 -17.82 -0.09 1.48 16 7 N -0.89 -25.50 11.31 55.43 0.63 -24.87 16 8 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 N -0.53 -11.28 4.47 -220.14 -0.98 -12.26 16 13 C 0.07 1.39 3.94 -3.83 -0.02 1.37 16 14 C -0.08 -1.35 2.49 -90.54 -0.23 -1.57 16 15 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 16 C 0.07 0.90 6.18 -3.82 -0.02 0.87 16 17 N -0.85 -9.73 9.13 -10.37 -0.09 -9.83 16 18 C -0.10 -1.54 5.14 -26.61 -0.14 -1.67 16 19 C -0.11 -1.76 5.37 -26.65 -0.14 -1.91 16 20 C 0.08 1.48 2.00 -67.72 -0.14 1.34 16 21 H 0.03 0.58 6.73 -51.93 -0.35 0.23 16 22 C -0.14 -2.58 8.78 37.16 0.33 -2.25 16 23 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 24 H 0.03 0.66 6.52 -51.93 -0.34 0.32 16 25 H 0.01 0.17 6.65 -51.93 -0.35 -0.18 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.02 0.45 6.62 -51.93 -0.34 0.11 16 28 H 0.08 1.73 6.35 -51.93 -0.33 1.40 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.34 3.16 9.08 -39.29 -0.36 2.81 16 32 H 0.34 3.59 8.99 -39.29 -0.35 3.24 16 33 H 0.06 0.92 7.83 -51.93 -0.41 0.52 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.28 6.22 -51.93 -0.32 0.95 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 290.25 15.07 4.37 4.37 Total: -1.00 -28.02 290.25 -8.29 -36.31 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.64 Total: 4.93 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.55 Total: -15.01 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.45 Total: -46.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.02 -8.29 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251526490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.526 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds