Wall clock time and date at job start Mon Mar 30 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46846 * 110.99881 * 59.21204 * 12 2 1 14 14 C 1.53040 * 109.52470 * 174.16150 * 13 12 2 15 15 H 1.08999 * 109.53438 * 299.21926 * 14 13 12 16 16 C 1.52998 * 109.50567 * 179.11784 * 14 13 12 17 17 N 1.46903 * 109.47063 * 175.19781 * 16 14 13 18 18 C 1.53118 * 109.27870 * 59.17603 * 14 13 12 19 19 C 1.53124 * 109.16187 * 302.35125 * 18 14 13 20 20 C 1.46848 * 111.00160 * 295.00149 * 12 2 1 21 21 H 1.09003 * 109.46224 * 65.82099 * 20 12 2 22 22 C 1.53005 * 109.45955 * 305.84285 * 20 12 2 23 23 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46302 * 294.17444 * 13 12 2 28 28 H 1.08994 * 109.46393 * 54.14031 * 13 12 2 29 29 H 1.09004 * 109.47042 * 295.19278 * 16 14 13 30 30 H 1.08995 * 109.47051 * 55.19365 * 16 14 13 31 31 H 1.00895 * 110.99843 * 180.02562 * 17 16 14 32 32 H 1.00900 * 110.99383 * 303.95216 * 17 16 14 33 33 H 1.09002 * 109.52539 * 182.44483 * 18 14 13 34 34 H 1.08993 * 109.52619 * 62.25394 * 18 14 13 35 35 H 1.09008 * 109.49730 * 297.71039 * 19 18 14 36 36 H 1.08995 * 109.50815 * 177.59965 * 19 18 14 37 37 H 1.09002 * 109.47009 * 60.00100 * 22 20 12 38 38 H 1.09000 * 109.46853 * 179.97438 * 22 20 12 39 39 H 1.08996 * 109.47379 * 300.00263 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0196 -0.6925 1.1995 13 6 1.5334 -2.0774 1.2430 14 6 2.1775 -2.8089 2.4229 15 1 3.2601 -2.8209 2.2971 16 6 1.6539 -4.2453 2.4808 17 7 2.3566 -4.9802 3.5410 18 6 1.8220 -2.0823 3.7230 19 6 2.2963 -0.6292 3.6326 20 6 1.6487 0.0390 2.4177 21 1 0.5648 0.0281 2.5320 22 6 2.1358 1.4856 2.3119 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7043 1.1577 -3.4845 27 1 0.4500 -2.0783 1.3628 28 1 1.7963 -2.5839 0.3144 29 1 0.5849 -4.2340 2.6939 30 1 1.8283 -4.7345 1.5226 31 1 2.0286 -5.9326 3.5992 32 1 3.3554 -4.9500 3.4009 33 1 2.3142 -2.5746 4.5618 34 1 0.7421 -2.1045 3.8692 35 1 3.3808 -0.6065 3.5255 36 1 2.0082 -0.0953 4.5382 37 1 1.6741 1.9620 1.4470 38 1 1.8602 2.0287 3.2158 39 1 3.2197 1.4966 2.1971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251526490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:28 Heat of formation + Delta-G solvation = -30.197222 kcal Electronic energy + Delta-G solvation = -16955.723704 eV Core-core repulsion = 14510.563709 eV Total energy + Delta-G solvation = -2445.159994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52906 -36.99590 -35.32917 -33.43647 -32.63443 -29.94201 -28.33741 -27.29625 -25.08195 -24.24579 -22.59912 -21.12717 -19.97191 -18.23229 -17.28361 -16.60175 -16.05953 -15.74077 -15.54447 -15.24814 -15.11675 -14.65303 -14.08340 -13.78349 -13.65732 -13.17461 -12.96267 -12.88604 -12.63501 -12.57233 -12.46552 -12.35646 -12.19151 -11.95773 -11.68073 -11.44795 -11.21983 -10.82121 -10.73255 -10.40624 -9.53843 -8.75764 -8.10026 -6.19831 1.39305 1.41380 1.52659 2.42388 3.18754 3.29822 3.74149 3.99754 4.05219 4.07719 4.28328 4.46306 4.57180 4.60285 4.68346 4.74213 4.83972 4.85140 4.88859 4.92492 5.03384 5.09439 5.12659 5.22219 5.26814 5.32902 5.39097 5.48590 5.60549 5.62314 5.76896 5.84942 6.23509 6.26336 6.57549 6.66870 6.86364 6.96140 7.49178 8.96338 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.009121 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.099640 B = 3069.070202 C = 3838.865214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.212 3.788 3 H 0.020 0.980 4 C -0.511 4.511 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.534 5.534 13 C 0.075 3.925 14 C -0.075 4.075 15 H 0.065 0.935 16 C 0.074 3.926 17 N -0.846 5.846 18 C -0.094 4.094 19 C -0.104 4.104 20 C 0.075 3.925 21 H 0.020 0.980 22 C -0.139 4.139 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.349 0.651 32 H 0.345 0.655 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -7.028 11.405 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.038 0.962 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.258 5.258 13 C -0.054 4.054 14 C -0.095 4.095 15 H 0.083 0.917 16 C -0.058 4.058 17 N -0.377 5.377 18 C -0.131 4.131 19 C -0.142 4.142 20 C -0.034 4.034 21 H 0.038 0.962 22 C -0.196 4.196 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.094 0.906 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.866 -6.392 11.746 13.502 hybrid contribution -0.550 -0.634 -2.109 2.270 sum 1.316 -7.026 9.637 11.999 Atomic orbital electron populations 1.22183 1.01004 0.98650 0.99689 1.19113 0.89487 0.93813 0.87095 0.96187 1.21438 1.30087 1.12365 0.91093 0.92789 1.25672 0.95539 0.95835 1.01744 1.70021 1.37927 1.24421 1.23802 0.85535 0.78052 0.78672 0.79542 1.19292 1.20778 1.20720 1.62174 1.59734 1.01869 1.01994 1.21853 0.95580 0.89947 0.98015 1.21131 0.99917 0.93874 0.94550 0.91658 1.21637 0.98571 0.93112 0.92470 1.58675 1.09913 1.19899 1.49192 1.21415 1.00160 0.94479 0.97088 1.21618 1.00537 0.95946 0.96090 1.21660 0.96312 0.94165 0.91260 0.96223 1.21831 1.01338 0.95281 1.01197 0.92156 0.95616 0.95975 0.93074 0.96924 0.92706 0.91500 0.95935 0.83738 0.84227 0.90024 0.93343 0.91832 0.90235 0.94600 0.90573 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.82 8.28 71.98 0.60 -7.23 16 2 C 0.21 10.88 1.96 44.17 0.09 10.97 16 3 H 0.02 1.15 5.92 -2.39 -0.01 1.13 16 4 C -0.51 -28.47 7.85 25.60 0.20 -28.27 16 5 H 0.05 3.02 6.77 -2.92 -0.02 3.00 16 6 C 0.01 0.57 5.31 84.66 0.45 1.02 16 7 N -0.92 -53.62 11.31 21.45 0.24 -53.38 16 8 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 N -0.53 -23.03 4.47 -850.38 -3.80 -26.83 16 13 C 0.07 2.95 3.94 86.33 0.34 3.29 16 14 C -0.08 -2.30 2.49 -10.74 -0.03 -2.33 16 15 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 16 C 0.07 1.88 6.18 86.30 0.53 2.41 16 17 N -0.85 -17.05 9.13 -186.72 -1.70 -18.75 16 18 C -0.09 -2.60 5.14 30.68 0.16 -2.44 16 19 C -0.10 -3.02 5.37 30.65 0.16 -2.86 16 20 C 0.07 2.72 2.00 44.94 0.09 2.81 16 21 H 0.02 0.76 6.73 -2.39 -0.02 0.75 16 22 C -0.14 -4.88 8.78 71.98 0.63 -4.24 16 23 H 0.06 3.35 6.06 -2.38 -0.01 3.34 16 24 H 0.02 1.24 6.52 -2.39 -0.02 1.23 16 25 H 0.02 1.00 6.65 -2.39 -0.02 0.98 16 26 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.01 0.52 6.62 -2.39 -0.02 0.50 16 28 H 0.05 2.41 6.35 -2.39 -0.02 2.39 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.35 5.59 9.08 -89.70 -0.81 4.78 16 32 H 0.35 6.37 8.99 -89.69 -0.81 5.56 16 33 H 0.08 2.04 7.83 -2.39 -0.02 2.02 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.03 1.44 6.22 -2.39 -0.01 1.43 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -60.27 290.25 -0.60 -60.87 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.59 Total: 18.67 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: 3.22 Total: -26.87 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -5.26 Total: -98.96 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -60.27 -0.60 -60.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251526490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.676 kcal (2) G-P(sol) polarization free energy of solvation -60.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds