Wall clock time and date at job start Mon Mar 30 2020 03:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47064 * 2 1 4 4 N 1.46899 * 109.46743 * 119.99659 * 2 1 3 5 5 C 1.40087 * 110.99976 * 77.96792 * 4 2 1 6 6 C 1.54516 * 111.50503 * 171.84811 * 5 4 2 7 7 C 1.50744 * 108.94430 * 76.00810 * 6 5 4 8 8 H 1.08994 * 108.79167 * 28.23503 * 7 6 5 9 9 C 1.53003 * 108.70132 * 146.52089 * 7 6 5 10 10 N 1.48072 * 112.93610 * 267.34527 * 7 6 5 11 11 C 1.47747 * 113.78854 * 41.71412 * 10 7 6 12 12 H 1.09003 * 108.99349 * 280.50312 * 11 10 7 13 13 C 1.50697 * 108.99227 * 161.75113 * 11 10 7 14 14 H 1.07998 * 119.99783 * 237.59963 * 13 11 10 15 15 C 1.37880 * 120.00237 * 57.60374 * 13 11 10 16 16 N 1.31511 * 119.99678 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00060 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46745 * 60.00170 * 17 15 13 19 19 H 1.48505 * 109.46828 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47443 * 300.00241 * 17 15 13 21 21 C 1.47686 * 111.00368 * 309.31884 * 4 2 1 22 22 H 1.08994 * 109.46934 * 185.78096 * 1 2 3 23 23 H 1.09000 * 109.46973 * 65.77936 * 1 2 3 24 24 H 1.08998 * 109.47151 * 305.77839 * 1 2 3 25 25 H 1.08993 * 109.46921 * 239.99480 * 2 1 3 26 26 H 1.08998 * 109.47002 * 59.99790 * 3 2 1 27 27 H 1.09002 * 109.47014 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.46847 * 299.99817 * 3 2 1 29 29 H 1.09007 * 109.07005 * 292.36295 * 5 4 2 30 30 H 1.08991 * 109.07599 * 51.32407 * 5 4 2 31 31 H 1.08997 * 109.55880 * 316.16427 * 6 5 4 32 32 H 1.09010 * 109.64528 * 195.89271 * 6 5 4 33 33 H 1.09001 * 109.47087 * 183.35077 * 9 7 6 34 34 H 1.08999 * 109.46556 * 303.34416 * 9 7 6 35 35 H 1.08996 * 109.47413 * 63.34902 * 9 7 6 36 36 H 1.00903 * 110.99908 * 275.65066 * 10 7 6 37 37 H 0.97006 * 120.00034 * 180.02562 * 16 15 13 38 38 H 1.08992 * 109.73547 * 327.67104 * 21 4 2 39 39 H 1.09004 * 109.73541 * 88.32135 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.9299 -2.0823 1.0486 6 6 2.6246 -2.8244 2.2123 7 6 1.7414 -2.7573 3.4321 8 1 0.7030 -2.6817 3.1100 9 6 1.9149 -4.0482 4.2349 10 7 2.0541 -1.6052 4.3082 11 6 2.3228 -0.3526 3.5724 12 1 3.3438 -0.3770 3.1914 13 6 2.1821 0.8119 4.5186 14 1 1.4782 1.6017 4.3018 15 6 2.9521 0.8689 5.6609 16 7 3.8090 -0.0932 5.9250 17 14 2.7782 2.3127 6.8333 18 1 1.3829 2.3754 7.3377 19 1 3.7099 2.1370 7.9764 20 1 3.1032 3.5730 6.1184 21 6 1.3724 -0.1637 2.4171 22 1 -0.3633 -1.0224 0.1035 23 1 -0.3633 0.4216 -0.9372 24 1 -0.3633 0.6008 0.8337 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 0.8790 -2.3702 1.0195 30 1 2.4030 -2.3699 0.1098 31 1 3.5817 -2.3497 2.4282 32 1 2.7879 -3.8664 1.9370 33 1 1.2374 -4.0388 5.0888 34 1 1.6872 -4.9043 3.5998 35 1 2.9435 -4.1210 4.5881 36 1 2.8117 -1.8246 4.9375 37 1 4.3505 -0.0533 6.7288 38 1 1.1559 0.8966 2.2881 39 1 0.4472 -0.7077 2.6080 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251541765.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:37 Heat of formation + Delta-G solvation = -14.424029 kcal Electronic energy + Delta-G solvation = -17178.646469 eV Core-core repulsion = 14734.170451 eV Total energy + Delta-G solvation = -2444.476017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75965 -37.35999 -35.24144 -32.94270 -32.71382 -28.81187 -28.32243 -27.99540 -26.75252 -23.62314 -22.45012 -21.05178 -20.02076 -18.49080 -17.19919 -16.43949 -16.31617 -16.00139 -15.61252 -15.08101 -14.83775 -14.26617 -14.04191 -13.80124 -13.55064 -13.22383 -12.91760 -12.82931 -12.72352 -12.68938 -12.43495 -12.22526 -12.08522 -11.94471 -11.85809 -11.60369 -11.39937 -11.25316 -10.88925 -10.49963 -8.93547 -8.51220 -8.07682 -6.15411 1.44029 1.46086 1.52842 2.47157 3.11919 3.20057 3.88711 3.96037 4.03388 4.12809 4.25962 4.36762 4.46927 4.52888 4.61607 4.68200 4.76174 4.79856 4.87190 4.89724 4.96902 4.99810 5.03200 5.08001 5.14040 5.23946 5.35165 5.37528 5.46815 5.51772 5.61966 5.86308 6.32464 6.41202 6.63635 6.77515 7.19727 7.26837 7.55378 9.02390 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.010867 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.631357 B = 2575.927666 C = 3526.042196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 C -0.138 4.138 4 N -0.566 5.566 5 C 0.082 3.918 6 C -0.138 4.138 7 C 0.075 3.925 8 H 0.050 0.950 9 C -0.138 4.138 10 N -0.696 5.696 11 C 0.229 3.771 12 H -0.031 1.031 13 C -0.527 4.527 14 H 0.050 0.950 15 C 0.025 3.975 16 N -0.918 5.918 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.098 3.902 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.344 0.656 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -3.699 -10.532 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 C -0.196 4.196 4 N -0.290 5.290 5 C -0.047 4.047 6 C -0.178 4.178 7 C -0.035 4.035 8 H 0.068 0.932 9 C -0.195 4.195 10 N -0.332 5.332 11 C 0.121 3.879 12 H -0.013 1.013 13 C -0.566 4.566 14 H 0.069 0.931 15 C -0.175 4.175 16 N -0.558 5.558 17 Si 0.782 3.218 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.029 4.029 22 H 0.068 0.932 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.109 0.891 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.165 0.835 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.487 -3.523 -10.280 11.757 hybrid contribution 0.240 0.368 0.661 0.793 sum -4.248 -3.155 -9.619 10.978 Atomic orbital electron populations 1.22371 0.96814 1.01463 1.02597 1.21768 0.93322 0.95672 0.92143 1.21811 1.01021 0.95160 1.01581 1.59219 1.60722 1.05952 1.03142 1.20971 0.97764 0.87461 0.98546 1.22162 0.98965 1.00410 0.96254 1.21477 0.97780 0.91700 0.92568 0.93152 1.21896 1.00990 0.96449 1.00210 1.60908 1.49316 1.02159 1.20796 1.18586 0.91732 0.87657 0.89915 1.01350 1.21545 1.21603 1.05800 1.07639 0.93130 1.25654 0.94409 0.98325 0.99079 1.69799 1.25034 1.34203 1.26775 0.85670 0.77780 0.79950 0.78445 1.20032 1.21068 1.19828 1.21691 0.94462 0.98279 0.88470 0.93196 0.90165 0.93741 0.89127 0.94176 0.93271 0.90152 0.96319 0.90195 0.94269 0.89406 0.93166 0.90219 0.93865 0.83533 0.92992 0.91668 0.95940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 8.55 71.98 0.62 -3.88 16 2 C 0.08 2.26 2.84 44.92 0.13 2.39 16 3 C -0.14 -3.97 9.22 71.98 0.66 -3.31 16 4 N -0.57 -20.75 3.88 -886.92 -3.44 -24.19 16 5 C 0.08 2.67 4.77 88.05 0.42 3.09 16 6 C -0.14 -4.91 5.18 30.38 0.16 -4.75 16 7 C 0.07 2.93 2.66 43.96 0.12 3.05 16 8 H 0.05 2.00 6.52 -2.39 -0.02 1.98 16 9 C -0.14 -4.57 8.98 71.98 0.65 -3.93 16 10 N -0.70 -34.62 6.15 -476.26 -2.93 -37.55 16 11 C 0.23 11.94 2.01 43.28 0.09 12.03 16 12 H -0.03 -1.85 7.20 -2.39 -0.02 -1.86 16 13 C -0.53 -29.95 8.63 25.60 0.22 -29.72 16 14 H 0.05 2.83 7.43 -2.91 -0.02 2.80 16 15 C 0.02 1.39 5.37 84.66 0.45 1.85 16 16 N -0.92 -53.42 11.50 21.45 0.25 -53.17 16 17 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.10 4.25 3.31 85.43 0.28 4.54 16 22 H 0.05 1.29 6.94 -2.39 -0.02 1.28 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.04 1.30 6.91 -2.39 -0.02 1.28 16 25 H 0.09 2.26 7.69 -2.39 -0.02 2.24 16 26 H 0.04 1.32 6.43 -2.39 -0.02 1.30 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.02 0.60 6.46 -2.38 -0.02 0.58 16 30 H 0.08 2.23 7.75 -2.39 -0.02 2.21 16 31 H 0.04 1.66 7.19 -2.39 -0.02 1.65 16 32 H 0.09 2.54 7.62 -2.38 -0.02 2.52 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.09 7.99 -2.39 -0.02 2.07 16 35 H 0.04 1.48 8.11 -2.39 -0.02 1.46 16 36 H 0.34 18.62 6.58 -89.69 -0.59 18.03 16 37 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 38 H 0.06 2.88 4.93 -2.39 -0.01 2.87 16 39 H 0.02 1.00 6.69 -2.39 -0.02 0.98 16 Total: -1.00 -61.29 287.25 0.12 -61.16 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.43 Total: 25.64 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.79 Total: -18.65 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -6.12 Total: -114.91 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -61.29 0.12 -61.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251541765.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.738 kcal (2) G-P(sol) polarization free energy of solvation -61.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds