Wall clock time and date at job start Mon Mar 30 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46962 * 2 1 4 4 C 1.50700 * 109.47058 * 240.00051 * 2 1 3 5 5 H 1.08000 * 119.99804 * 245.27632 * 4 2 1 6 6 C 1.37878 * 120.00206 * 65.27769 * 4 2 1 7 7 N 1.31510 * 119.99726 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47052 * 89.99714 * 8 6 4 10 10 H 1.48499 * 109.47246 * 210.00071 * 8 6 4 11 11 H 1.48500 * 109.46830 * 330.00184 * 8 6 4 12 12 N 1.46901 * 109.47112 * 119.99766 * 2 1 3 13 13 C 1.46847 * 111.00155 * 209.16990 * 12 2 1 14 14 H 1.09001 * 109.46134 * 294.18006 * 13 12 2 15 15 C 1.52996 * 109.46104 * 54.14535 * 13 12 2 16 16 C 1.53040 * 109.52177 * 174.16380 * 13 12 2 17 17 C 1.53110 * 109.27978 * 59.17943 * 16 13 12 18 18 C 1.53115 * 109.16188 * 302.34574 * 17 16 13 19 19 C 1.46845 * 110.99678 * 84.96079 * 12 2 1 20 20 H 1.08999 * 109.46743 * 65.82195 * 19 12 2 21 21 C 1.53004 * 109.46395 * 305.85527 * 19 12 2 22 22 N 1.46903 * 109.47107 * 304.93338 * 21 19 12 23 23 H 1.09002 * 109.46884 * 292.43797 * 1 2 3 24 24 H 1.09000 * 109.46967 * 172.43571 * 1 2 3 25 25 H 1.08995 * 109.47008 * 52.43539 * 1 2 3 26 26 H 0.97007 * 120.00025 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47542 * 53.25119 * 15 13 12 28 28 H 1.09003 * 109.46883 * 173.24844 * 15 13 12 29 29 H 1.09006 * 109.47093 * 293.24734 * 15 13 12 30 30 H 1.09001 * 109.49932 * 179.11953 * 16 13 12 31 31 H 1.08997 * 109.50148 * 299.19659 * 16 13 12 32 32 H 1.09002 * 109.52872 * 62.25070 * 17 16 13 33 33 H 1.08999 * 109.52378 * 182.43991 * 17 16 13 34 34 H 1.09002 * 109.51067 * 177.59914 * 18 17 16 35 35 H 1.09006 * 109.50146 * 297.67287 * 18 17 16 36 36 H 1.08994 * 109.47014 * 64.93506 * 21 19 12 37 37 H 1.08999 * 109.46981 * 184.93655 * 21 19 12 38 38 H 1.00894 * 111.00093 * 184.77613 * 22 21 19 39 39 H 1.00905 * 110.99731 * 308.73391 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5811 -1.6355 -1.1336 6 6 1.7913 -0.1793 -2.4798 7 7 1.1235 0.9474 -2.5977 8 14 2.4146 -1.0595 -4.0050 9 1 1.3811 -2.0124 -4.4837 10 1 2.7008 -0.0639 -5.0689 11 1 3.6574 -1.8022 -3.6747 12 7 2.0197 -0.6925 1.1995 13 6 3.3237 -0.1624 1.6177 14 1 4.0702 -0.3932 0.8578 15 6 3.2255 1.3546 1.7912 16 6 3.7336 -0.8021 2.9462 17 6 3.8111 -2.3214 2.7730 18 6 2.4544 -2.8421 2.2905 19 6 2.0815 -2.1433 0.9811 20 1 2.8339 -2.3649 0.2241 21 6 0.7169 -2.6459 0.5056 22 7 -0.3162 -2.2433 1.4693 23 1 -0.3633 0.3923 0.9499 24 1 -0.3633 -1.0187 -0.1353 25 1 -0.3633 0.6265 -0.8146 26 1 0.9536 1.3209 -3.4767 27 1 2.3982 1.5910 2.4604 28 1 4.1555 1.7327 2.2156 29 1 3.0527 1.8208 0.8211 30 1 4.7087 -0.4201 3.2484 31 1 2.9950 -0.5595 3.7101 32 1 4.5775 -2.5657 2.0373 33 1 4.0605 -2.7846 3.7276 34 1 2.5154 -3.9177 2.1245 35 1 1.6954 -2.6328 3.0444 36 1 0.4911 -2.2157 -0.4701 37 1 0.7371 -3.7329 0.4276 38 1 -1.2142 -2.6291 1.2189 39 1 -0.0578 -2.5081 2.4081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252464042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:33 Heat of formation + Delta-G solvation = 19.889967 kcal Electronic energy + Delta-G solvation = -17628.610725 eV Core-core repulsion = 15185.622674 eV Total energy + Delta-G solvation = -2442.988051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.09490 -34.65516 -33.89047 -31.89483 -30.57134 -28.40824 -26.28133 -25.11769 -24.63283 -21.89413 -19.98904 -19.77333 -18.63056 -16.29757 -15.28807 -15.14690 -14.81954 -14.13667 -13.70831 -13.46500 -13.12445 -12.72893 -12.53101 -12.16297 -11.51851 -11.44075 -11.16789 -11.07476 -10.95387 -10.80060 -10.60834 -10.33866 -10.23053 -10.21972 -9.84279 -9.59928 -9.47689 -9.12691 -8.57145 -8.12364 -7.67978 -6.83337 -5.90183 -3.99288 3.29306 3.37152 3.39244 4.45628 4.99112 5.33186 5.36319 5.39301 5.39707 5.55217 5.78386 5.95432 6.07728 6.10802 6.18584 6.27553 6.35453 6.38144 6.40807 6.45293 6.56724 6.76679 6.84218 6.94161 7.06354 7.13512 7.32246 7.58081 7.63562 7.83986 7.86431 8.06603 8.17410 8.29494 8.39311 8.54489 8.76792 9.15216 9.66337 11.11465 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.011159 C = 0.010389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.698198 B = 2508.649827 C = 2694.621495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.202 3.798 3 H 0.042 0.958 4 C -0.543 4.543 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.879 3.121 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.507 5.507 13 C 0.084 3.916 14 H 0.031 0.969 15 C -0.141 4.141 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.117 4.117 19 C 0.098 3.902 20 H 0.048 0.952 21 C 0.061 3.939 22 N -0.820 5.820 23 H 0.014 0.986 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.258 0.742 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.000 1.000 38 H 0.323 0.677 39 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 -5.346 8.513 10.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.059 0.941 4 C -0.582 4.582 5 H 0.078 0.922 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.708 3.292 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.233 5.233 13 C -0.025 4.025 14 H 0.049 0.951 15 C -0.199 4.199 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.012 4.012 20 H 0.065 0.935 21 C -0.069 4.069 22 N -0.350 5.350 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.018 0.982 38 H 0.134 0.866 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.706 -4.366 8.513 9.718 hybrid contribution 0.928 -1.684 -1.497 2.436 sum 2.633 -6.050 7.016 9.632 Atomic orbital electron populations 1.21980 0.96896 1.01358 0.97410 1.19396 0.93117 0.94119 0.83806 0.94072 1.21905 1.35396 1.08905 0.92022 0.92196 1.24907 0.95124 0.94759 0.98611 1.69954 1.40123 1.18873 1.23253 0.86805 0.79183 0.79582 0.83659 1.20804 1.21343 1.20225 1.62404 1.22312 1.01617 1.36925 1.21401 0.92316 0.94224 0.94584 0.95075 1.21875 1.00111 0.95558 1.02320 1.21621 0.99951 0.94652 0.98433 1.21514 0.97551 0.96442 0.99864 1.21726 0.96902 0.97999 0.98888 1.21397 0.95814 0.90175 0.93767 0.93480 1.22218 0.91397 0.94198 0.99127 1.58929 1.04009 1.67269 1.04755 0.96643 0.92138 0.93479 0.93177 0.92567 0.94006 0.91590 0.93027 0.91794 0.92824 0.93083 0.93336 0.91766 0.86866 0.98211 0.86647 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 7.81 37.16 0.29 -2.61 16 2 C 0.20 4.97 1.95 -68.86 -0.13 4.83 16 3 H 0.04 1.13 5.21 -51.93 -0.27 0.86 16 4 C -0.54 -14.32 6.33 -34.44 -0.22 -14.53 16 5 H 0.06 1.58 5.09 -52.49 -0.27 1.32 16 6 C 0.07 1.86 5.33 -17.82 -0.09 1.77 16 7 N -0.88 -25.18 11.80 55.43 0.65 -24.53 16 8 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.51 -10.63 3.99 -212.25 -0.85 -11.48 16 13 C 0.08 1.63 2.40 -67.72 -0.16 1.47 16 14 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.14 -2.62 8.70 37.16 0.32 -2.30 16 16 C -0.11 -1.73 5.37 -26.65 -0.14 -1.88 16 17 C -0.12 -1.74 6.00 -26.61 -0.16 -1.90 16 18 C -0.12 -1.86 5.17 -26.65 -0.14 -2.00 16 19 C 0.10 1.90 1.57 -67.72 -0.11 1.80 16 20 H 0.05 1.04 5.91 -51.93 -0.31 0.73 16 21 C 0.06 1.15 5.30 -3.82 -0.02 1.13 16 22 N -0.82 -13.86 7.01 -10.37 -0.07 -13.93 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 1.42 3.59 -51.93 -0.19 1.23 16 25 H 0.05 1.27 6.70 -51.93 -0.35 0.92 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.38 6.16 -51.93 -0.32 1.06 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 36 H 0.11 2.55 4.28 -51.93 -0.22 2.33 16 37 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 38 H 0.32 4.81 9.08 -39.29 -0.36 4.46 16 39 H 0.32 5.00 7.09 -39.29 -0.28 4.72 16 LS Contribution 278.98 15.07 4.20 4.20 Total: -1.00 -27.56 278.98 -7.90 -35.47 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.26 Total: 8.36 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -0.56 Total: -14.24 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.26 Total: -49.93 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.56 -7.90 -35.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252464042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.357 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds