Wall clock time and date at job start Mon Mar 30 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46962 * 2 1 4 4 C 1.50700 * 109.47058 * 240.00051 * 2 1 3 5 5 H 1.08000 * 119.99804 * 245.27632 * 4 2 1 6 6 C 1.37878 * 120.00206 * 65.27769 * 4 2 1 7 7 N 1.31510 * 119.99726 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47052 * 89.99714 * 8 6 4 10 10 H 1.48499 * 109.47246 * 210.00071 * 8 6 4 11 11 H 1.48500 * 109.46830 * 330.00184 * 8 6 4 12 12 N 1.46901 * 109.47112 * 119.99766 * 2 1 3 13 13 C 1.46847 * 111.00155 * 209.16990 * 12 2 1 14 14 H 1.09001 * 109.46134 * 294.18006 * 13 12 2 15 15 C 1.52996 * 109.46104 * 54.14535 * 13 12 2 16 16 C 1.53040 * 109.52177 * 174.16380 * 13 12 2 17 17 C 1.53110 * 109.27978 * 59.17943 * 16 13 12 18 18 C 1.53115 * 109.16188 * 302.34574 * 17 16 13 19 19 C 1.46845 * 110.99678 * 84.96079 * 12 2 1 20 20 H 1.08999 * 109.46743 * 65.82195 * 19 12 2 21 21 C 1.53004 * 109.46395 * 305.85527 * 19 12 2 22 22 N 1.46903 * 109.47107 * 304.93338 * 21 19 12 23 23 H 1.09002 * 109.46884 * 292.43797 * 1 2 3 24 24 H 1.09000 * 109.46967 * 172.43571 * 1 2 3 25 25 H 1.08995 * 109.47008 * 52.43539 * 1 2 3 26 26 H 0.97007 * 120.00025 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47542 * 53.25119 * 15 13 12 28 28 H 1.09003 * 109.46883 * 173.24844 * 15 13 12 29 29 H 1.09006 * 109.47093 * 293.24734 * 15 13 12 30 30 H 1.09001 * 109.49932 * 179.11953 * 16 13 12 31 31 H 1.08997 * 109.50148 * 299.19659 * 16 13 12 32 32 H 1.09002 * 109.52872 * 62.25070 * 17 16 13 33 33 H 1.08999 * 109.52378 * 182.43991 * 17 16 13 34 34 H 1.09002 * 109.51067 * 177.59914 * 18 17 16 35 35 H 1.09006 * 109.50146 * 297.67287 * 18 17 16 36 36 H 1.08994 * 109.47014 * 64.93506 * 21 19 12 37 37 H 1.08999 * 109.46981 * 184.93655 * 21 19 12 38 38 H 1.00894 * 111.00093 * 184.77613 * 22 21 19 39 39 H 1.00905 * 110.99731 * 308.73391 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5811 -1.6355 -1.1336 6 6 1.7913 -0.1793 -2.4798 7 7 1.1235 0.9474 -2.5977 8 14 2.4146 -1.0595 -4.0050 9 1 1.3811 -2.0124 -4.4837 10 1 2.7008 -0.0639 -5.0689 11 1 3.6574 -1.8022 -3.6747 12 7 2.0197 -0.6925 1.1995 13 6 3.3237 -0.1624 1.6177 14 1 4.0702 -0.3932 0.8578 15 6 3.2255 1.3546 1.7912 16 6 3.7336 -0.8021 2.9462 17 6 3.8111 -2.3214 2.7730 18 6 2.4544 -2.8421 2.2905 19 6 2.0815 -2.1433 0.9811 20 1 2.8339 -2.3649 0.2241 21 6 0.7169 -2.6459 0.5056 22 7 -0.3162 -2.2433 1.4693 23 1 -0.3633 0.3923 0.9499 24 1 -0.3633 -1.0187 -0.1353 25 1 -0.3633 0.6265 -0.8146 26 1 0.9536 1.3209 -3.4767 27 1 2.3982 1.5910 2.4604 28 1 4.1555 1.7327 2.2156 29 1 3.0527 1.8208 0.8211 30 1 4.7087 -0.4201 3.2484 31 1 2.9950 -0.5595 3.7101 32 1 4.5775 -2.5657 2.0373 33 1 4.0605 -2.7846 3.7276 34 1 2.5154 -3.9177 2.1245 35 1 1.6954 -2.6328 3.0444 36 1 0.4911 -2.2157 -0.4701 37 1 0.7371 -3.7329 0.4276 38 1 -1.2142 -2.6291 1.2189 39 1 -0.0578 -2.5081 2.4081 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252464042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:33 Heat of formation + Delta-G solvation = 1.148021 kcal Electronic energy + Delta-G solvation = -17629.423437 eV Core-core repulsion = 15185.622674 eV Total energy + Delta-G solvation = -2443.800763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67360 -36.21724 -35.54514 -33.70142 -32.10036 -30.18425 -27.80386 -27.06734 -26.21992 -23.44628 -21.51105 -21.44485 -20.28754 -18.17724 -16.93869 -16.78106 -16.50187 -15.83065 -15.14347 -15.00038 -14.65107 -14.37658 -14.08982 -13.63632 -13.24329 -13.03366 -13.01251 -12.81711 -12.53193 -12.39057 -12.30314 -12.11828 -12.00548 -11.88279 -11.44835 -11.23614 -11.09970 -10.83350 -10.53733 -10.08633 -9.07946 -8.64397 -7.96152 -6.14100 1.35974 1.38182 1.45904 2.42946 3.23975 3.42976 4.03432 4.06510 4.08317 4.18912 4.34399 4.53462 4.59916 4.72885 4.79551 4.84474 4.87309 4.98027 5.12524 5.15542 5.19879 5.30919 5.32966 5.41008 5.44320 5.52948 5.55102 5.61168 5.69615 5.75545 6.09928 6.20566 6.36741 6.56835 6.61471 6.95514 7.02983 7.14544 7.55261 9.00892 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.011159 C = 0.010389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.698198 B = 2508.649827 C = 2694.621495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.206 3.794 3 H 0.009 0.991 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.938 3.062 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.502 5.502 13 C 0.077 3.923 14 H 0.002 0.998 15 C -0.134 4.134 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.109 4.109 19 C 0.094 3.906 20 H 0.017 0.983 21 C 0.067 3.933 22 N -0.826 5.826 23 H 0.016 0.984 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.257 0.743 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.020 0.980 38 H 0.336 0.664 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -7.051 10.310 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 H 0.027 0.973 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.765 3.235 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.227 5.227 13 C -0.032 4.032 14 H 0.020 0.980 15 C -0.191 4.191 16 C -0.138 4.138 17 C -0.152 4.152 18 C -0.147 4.147 19 C -0.015 4.015 20 H 0.034 0.966 21 C -0.063 4.063 22 N -0.358 5.358 23 H 0.035 0.965 24 H 0.091 0.909 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.148 0.852 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.329 -6.091 10.328 12.214 hybrid contribution 0.741 -1.150 -2.018 2.438 sum 3.069 -7.241 8.310 11.441 Atomic orbital electron populations 1.21818 0.96862 1.01285 0.95998 1.19162 0.93079 0.92761 0.85073 0.97280 1.22136 1.34476 1.08539 0.92812 0.92457 1.25596 0.95620 0.95473 1.01366 1.70090 1.41580 1.20269 1.23598 0.85871 0.78727 0.78510 0.80401 1.20165 1.21402 1.19908 1.62388 1.23317 1.02500 1.34510 1.21566 0.90672 0.94972 0.95986 0.97976 1.21795 1.01678 0.95124 1.00528 1.21560 1.01136 0.95248 0.95837 1.21533 0.96699 0.95717 1.01284 1.21660 0.97751 0.98609 0.96641 1.21472 0.95339 0.89342 0.95329 0.96568 1.21947 0.91725 0.95046 0.97603 1.58749 1.04199 1.67773 1.05089 0.96494 0.90942 0.96774 0.93414 0.92375 0.91080 0.95110 0.90897 0.91123 0.93570 0.89813 0.91461 0.90720 0.90870 0.96206 0.85193 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.10 7.81 71.98 0.56 -4.53 16 2 C 0.21 10.46 1.95 44.17 0.09 10.55 16 3 H 0.01 0.54 5.21 -2.39 -0.01 0.52 16 4 C -0.54 -29.24 6.33 25.60 0.16 -29.08 16 5 H 0.06 3.10 5.09 -2.91 -0.01 3.08 16 6 C 0.02 1.04 5.33 84.66 0.45 1.49 16 7 N -0.92 -53.98 11.80 21.45 0.25 -53.72 16 8 Si 0.94 44.27 29.54 68.60 2.03 46.30 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 12 N -0.50 -20.94 3.99 -825.43 -3.29 -24.23 16 13 C 0.08 2.95 2.40 44.94 0.11 3.05 16 14 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 15 C -0.13 -4.96 8.70 71.98 0.63 -4.33 16 16 C -0.10 -2.89 5.37 30.64 0.16 -2.72 16 17 C -0.11 -3.03 6.00 30.67 0.18 -2.85 16 18 C -0.11 -3.10 5.17 30.65 0.16 -2.94 16 19 C 0.09 3.57 1.57 44.94 0.07 3.64 16 20 H 0.02 0.73 5.91 -2.39 -0.01 0.71 16 21 C 0.07 2.47 5.30 86.30 0.46 2.93 16 22 N -0.83 -26.34 7.01 -186.71 -1.31 -27.64 16 23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.07 3.44 3.59 -2.39 -0.01 3.43 16 25 H 0.01 0.76 6.70 -2.39 -0.02 0.74 16 26 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.03 1.33 6.16 -2.38 -0.01 1.32 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.01 6.55 -2.38 -0.02 1.99 16 36 H 0.07 3.31 4.28 -2.39 -0.01 3.30 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.34 9.34 9.08 -89.70 -0.81 8.52 16 39 H 0.34 9.38 7.09 -89.69 -0.64 8.75 16 Total: -1.00 -60.91 278.98 0.31 -60.60 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.40 Total: 23.49 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 3.03 Total: -24.80 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.35 Total: -105.59 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.91 0.31 -60.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252464042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.748 kcal (2) G-P(sol) polarization free energy of solvation -60.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds