Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.52551 * 2 1 4 4 C 1.53117 * 109.52523 * 120.12937 * 2 1 3 5 5 C 1.53036 * 109.27727 * 62.25382 * 4 2 1 6 6 N 1.46844 * 109.52466 * 59.17665 * 5 4 2 7 7 C 1.46904 * 110.99751 * 174.16156 * 6 5 4 8 8 C 1.53002 * 109.47317 * 293.95522 * 7 6 5 9 9 C 1.50698 * 109.46880 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00502 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99541 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99895 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00265 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46812 * 90.00497 * 13 11 9 15 15 H 1.48491 * 109.47406 * 210.00286 * 13 11 9 16 16 H 1.48498 * 109.47233 * 330.00778 * 13 11 9 17 17 C 1.46845 * 111.20181 * 298.25652 * 6 5 4 18 18 C 1.53038 * 109.51764 * 61.74386 * 17 6 5 19 19 H 1.08997 * 109.50828 * 60.76329 * 18 17 6 20 20 C 1.53003 * 109.50276 * 180.87897 * 18 17 6 21 21 N 1.46899 * 109.47223 * 294.80571 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.86820 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.87011 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.86992 * 1 2 3 25 25 H 1.09003 * 109.50367 * 182.19043 * 4 2 1 26 26 H 1.08999 * 109.50245 * 302.31165 * 4 2 1 27 27 H 1.09000 * 109.46603 * 179.20054 * 5 4 2 28 28 H 1.09003 * 109.45893 * 299.16011 * 5 4 2 29 29 H 1.08999 * 109.47074 * 53.96042 * 7 6 5 30 30 H 1.09003 * 109.47195 * 173.95435 * 7 6 5 31 31 H 1.09002 * 109.46590 * 300.00093 * 8 7 6 32 32 H 1.08993 * 109.47117 * 59.99842 * 8 7 6 33 33 H 0.96998 * 120.00302 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46561 * 181.75465 * 17 6 5 35 35 H 1.08999 * 109.46361 * 301.74095 * 17 6 5 36 36 H 1.09008 * 109.47026 * 54.80360 * 20 18 17 37 37 H 1.09001 * 109.47542 * 174.80219 * 20 18 17 38 38 H 1.00890 * 111.00066 * 56.04301 * 21 20 18 39 39 H 1.00898 * 111.00051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2481 5 6 1.5767 -2.1820 1.2127 6 7 2.0925 -2.8323 0.0013 7 6 1.7824 -4.2682 0.0021 8 6 2.5458 -4.9543 1.1368 9 6 2.2281 -6.4274 1.1371 10 1 1.5493 -6.8337 0.4018 11 6 2.8033 -7.2564 2.0767 12 7 2.5257 -8.5420 2.0774 13 14 3.9768 -6.5538 3.3489 14 1 3.2112 -6.1348 4.5505 15 1 4.9703 -7.5891 3.7312 16 1 4.6817 -5.3787 2.7765 17 6 1.5766 -2.1832 -1.2106 18 6 2.0417 -0.7257 -1.2475 19 1 3.1310 -0.6916 -1.2672 20 6 1.4859 -0.0436 -2.4992 21 7 2.0707 -0.6639 -3.6955 22 1 -0.3633 0.5118 0.8912 23 1 -0.3633 -1.0277 -0.0023 24 1 -0.3634 0.5159 -0.8888 25 1 3.1310 -0.6903 1.2677 26 1 1.6457 -0.2376 2.1394 27 1 1.9514 -2.7043 2.0930 28 1 0.4872 -2.2155 1.2071 29 1 0.7114 -4.4085 0.1478 30 1 2.0795 -4.7046 -0.9516 31 1 3.6169 -4.8139 0.9909 32 1 2.2487 -4.5180 2.0903 33 1 2.9306 -9.1253 2.7382 34 1 1.9514 -2.7063 -2.0904 35 1 0.4872 -2.2166 -1.2048 36 1 0.4020 -0.1573 -2.5240 37 1 1.7396 1.0163 -2.4786 38 1 1.9044 -1.6590 -3.7048 39 1 1.7195 -0.2303 -4.5361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253179267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = -15.872536 kcal Electronic energy + Delta-G solvation = -16436.184184 eV Core-core repulsion = 13991.645355 eV Total energy + Delta-G solvation = -2444.538829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64508 -35.68260 -34.02774 -32.67307 -30.27634 -29.99313 -27.42295 -25.14287 -24.53683 -22.41595 -21.54627 -19.73057 -18.28011 -16.92918 -16.10660 -15.65051 -15.30026 -14.55721 -14.29695 -14.20419 -13.69170 -13.42291 -13.05047 -12.98752 -12.62273 -12.54166 -11.87146 -11.66687 -11.32054 -11.29543 -10.96279 -10.93523 -10.54508 -10.33139 -10.16804 -9.83027 -9.78791 -9.55249 -9.17133 -8.76545 -8.50211 -7.73646 -6.02317 -4.00191 3.33681 3.41350 3.48103 4.32755 4.42441 4.48645 4.78574 4.81993 5.01559 5.15294 5.32301 5.36806 5.43098 5.49343 5.57549 5.59536 5.70149 5.80034 5.84257 5.96839 6.00630 6.07533 6.17311 6.23934 6.32411 6.41518 6.44342 6.55315 6.80087 7.02293 7.20335 7.30439 7.36914 7.66363 7.70230 7.88820 8.55475 9.01814 9.60477 11.11131 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038401 B = 0.006259 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.963877 B = 4472.620102 C = 4826.087521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.111 4.111 5 C 0.051 3.949 6 N -0.539 5.539 7 C 0.072 3.928 8 C -0.007 4.007 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.067 3.933 12 N -0.905 5.905 13 Si 0.879 3.121 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.262 1.262 17 C 0.060 3.940 18 C -0.079 4.079 19 H 0.086 0.914 20 C 0.067 3.933 21 N -0.852 5.852 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.343 0.657 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 18.464 -6.048 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.077 4.077 6 N -0.263 5.263 7 C -0.055 4.055 8 C -0.045 4.045 9 C -0.559 4.559 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.707 3.293 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.187 1.187 17 C -0.068 4.068 18 C -0.098 4.098 19 H 0.104 0.896 20 C -0.064 4.064 21 N -0.383 5.383 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.143 18.593 -5.667 19.555 hybrid contribution -1.330 -0.209 0.486 1.431 sum -3.473 18.384 -5.181 19.413 Atomic orbital electron populations 1.22000 0.95815 1.02060 1.01162 1.21133 0.95408 0.98879 0.95090 0.91455 1.21620 1.01527 0.95085 0.96681 1.22136 0.96936 0.94221 0.94364 1.61972 1.59439 1.03958 1.00947 1.22104 0.97722 0.84483 1.01181 1.19570 0.96327 0.95537 0.93020 1.21097 1.28048 0.90781 1.16002 0.91198 1.24993 0.96268 0.94666 0.97425 1.69917 1.44510 1.03805 1.36170 0.86773 0.81381 0.79259 0.81921 1.20405 1.21424 1.18672 1.22094 0.96557 0.94213 0.93975 1.21217 1.01716 0.94139 0.92739 0.89558 1.21869 0.95812 0.98587 0.90123 1.58724 1.66302 1.08855 1.04373 0.92920 0.92296 0.92911 0.91145 0.91919 0.90144 0.95233 0.95850 0.91568 0.95682 0.97112 0.92760 0.91179 0.95601 0.95530 0.91266 0.84381 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.19 37.16 0.30 -1.32 16 2 C -0.09 -0.98 2.77 -90.50 -0.25 -1.23 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.45 5.60 -26.65 -0.15 -1.60 16 5 C 0.05 0.83 5.05 -3.84 -0.02 0.81 16 6 N -0.54 -9.46 4.65 -234.67 -1.09 -10.55 16 7 C 0.07 1.49 4.90 -3.82 -0.02 1.47 16 8 C -0.01 -0.17 3.98 -27.88 -0.11 -0.28 16 9 C -0.52 -15.09 9.66 -34.44 -0.33 -15.43 16 10 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 13 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 17 C 0.06 0.86 4.25 -3.83 -0.02 0.85 16 18 C -0.08 -0.97 2.34 -90.54 -0.21 -1.18 16 19 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.07 0.69 5.67 -3.82 -0.02 0.67 16 21 N -0.85 -8.59 9.62 -10.36 -0.10 -8.69 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.71 4.92 -51.93 -0.26 0.46 16 24 H 0.05 0.50 6.53 -51.93 -0.34 0.16 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.43 6.22 -51.93 -0.32 1.10 16 28 H 0.03 0.47 6.51 -51.93 -0.34 0.13 16 29 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 1.37 7.98 -51.93 -0.41 0.96 16 31 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 32 H 0.01 0.26 5.86 -51.93 -0.30 -0.04 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.07 1.00 6.59 -51.93 -0.34 0.66 16 35 H 0.03 0.37 6.51 -51.93 -0.34 0.03 16 36 H 0.03 0.26 6.69 -51.92 -0.35 -0.09 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.34 3.47 7.28 -39.30 -0.29 3.18 16 39 H 0.34 2.68 9.08 -39.29 -0.36 2.33 16 LS Contribution 288.99 15.07 4.35 4.35 Total: -1.00 -30.77 288.99 -8.22 -38.99 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.56 Total: 1.23 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.92 Total: -15.34 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.42 Total: -46.72 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.77 -8.22 -38.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253179267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.117 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds