Wall clock time and date at job start Mon Mar 30 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.52551 * 2 1 4 4 C 1.53117 * 109.52523 * 120.12937 * 2 1 3 5 5 C 1.53036 * 109.27727 * 62.25382 * 4 2 1 6 6 N 1.46844 * 109.52466 * 59.17665 * 5 4 2 7 7 C 1.46904 * 110.99751 * 174.16156 * 6 5 4 8 8 C 1.53002 * 109.47317 * 293.95522 * 7 6 5 9 9 C 1.50698 * 109.46880 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00502 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99541 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99895 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00265 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46812 * 90.00497 * 13 11 9 15 15 H 1.48491 * 109.47406 * 210.00286 * 13 11 9 16 16 H 1.48498 * 109.47233 * 330.00778 * 13 11 9 17 17 C 1.46845 * 111.20181 * 298.25652 * 6 5 4 18 18 C 1.53038 * 109.51764 * 61.74386 * 17 6 5 19 19 H 1.08997 * 109.50828 * 60.76329 * 18 17 6 20 20 C 1.53003 * 109.50276 * 180.87897 * 18 17 6 21 21 N 1.46899 * 109.47223 * 294.80571 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.86820 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.87011 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.86992 * 1 2 3 25 25 H 1.09003 * 109.50367 * 182.19043 * 4 2 1 26 26 H 1.08999 * 109.50245 * 302.31165 * 4 2 1 27 27 H 1.09000 * 109.46603 * 179.20054 * 5 4 2 28 28 H 1.09003 * 109.45893 * 299.16011 * 5 4 2 29 29 H 1.08999 * 109.47074 * 53.96042 * 7 6 5 30 30 H 1.09003 * 109.47195 * 173.95435 * 7 6 5 31 31 H 1.09002 * 109.46590 * 300.00093 * 8 7 6 32 32 H 1.08993 * 109.47117 * 59.99842 * 8 7 6 33 33 H 0.96998 * 120.00302 * 179.97438 * 12 11 9 34 34 H 1.08999 * 109.46561 * 181.75465 * 17 6 5 35 35 H 1.08999 * 109.46361 * 301.74095 * 17 6 5 36 36 H 1.09008 * 109.47026 * 54.80360 * 20 18 17 37 37 H 1.09001 * 109.47542 * 174.80219 * 20 18 17 38 38 H 1.00890 * 111.00066 * 56.04301 * 21 20 18 39 39 H 1.00898 * 111.00051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2481 5 6 1.5767 -2.1820 1.2127 6 7 2.0925 -2.8323 0.0013 7 6 1.7824 -4.2682 0.0021 8 6 2.5458 -4.9543 1.1368 9 6 2.2281 -6.4274 1.1371 10 1 1.5493 -6.8337 0.4018 11 6 2.8033 -7.2564 2.0767 12 7 2.5257 -8.5420 2.0774 13 14 3.9768 -6.5538 3.3489 14 1 3.2112 -6.1348 4.5505 15 1 4.9703 -7.5891 3.7312 16 1 4.6817 -5.3787 2.7765 17 6 1.5766 -2.1832 -1.2106 18 6 2.0417 -0.7257 -1.2475 19 1 3.1310 -0.6916 -1.2672 20 6 1.4859 -0.0436 -2.4992 21 7 2.0707 -0.6639 -3.6955 22 1 -0.3633 0.5118 0.8912 23 1 -0.3633 -1.0277 -0.0023 24 1 -0.3634 0.5159 -0.8888 25 1 3.1310 -0.6903 1.2677 26 1 1.6457 -0.2376 2.1394 27 1 1.9514 -2.7043 2.0930 28 1 0.4872 -2.2155 1.2071 29 1 0.7114 -4.4085 0.1478 30 1 2.0795 -4.7046 -0.9516 31 1 3.6169 -4.8139 0.9909 32 1 2.2487 -4.5180 2.0903 33 1 2.9306 -9.1253 2.7382 34 1 1.9514 -2.7063 -2.0904 35 1 0.4872 -2.2166 -1.2048 36 1 0.4020 -0.1573 -2.5240 37 1 1.7396 1.0163 -2.4786 38 1 1.9044 -1.6590 -3.7048 39 1 1.7195 -0.2303 -4.5361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253179267.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:57 Heat of formation + Delta-G solvation = -38.566925 kcal Electronic energy + Delta-G solvation = -16437.168287 eV Core-core repulsion = 13991.645355 eV Total energy + Delta-G solvation = -2445.522932 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76970 -36.99655 -35.25977 -34.54439 -31.96330 -31.18996 -28.55096 -26.62977 -25.70580 -23.91431 -22.74070 -21.36057 -19.32683 -19.01737 -17.22820 -16.67505 -16.40360 -16.16663 -15.87703 -15.49681 -15.04498 -14.66640 -14.55597 -14.15410 -14.02219 -13.77571 -13.43038 -12.92011 -12.81343 -12.52082 -12.37426 -12.01589 -11.94541 -11.82899 -11.75039 -11.44902 -11.37108 -11.08336 -10.96658 -10.74857 -9.53262 -9.13872 -8.31585 -6.35765 1.34184 1.37103 1.50468 2.35339 3.00528 3.03975 3.61179 3.82826 3.83550 4.06425 4.17292 4.31886 4.38934 4.42966 4.46325 4.55819 4.61919 4.66668 4.74916 4.80896 4.91742 4.93936 4.96764 5.11121 5.17680 5.20596 5.27425 5.31988 5.42023 5.46016 5.57592 5.62655 6.15495 6.24992 6.28652 6.34510 6.61206 6.71682 7.29116 8.85196 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.038401 B = 0.006259 C = 0.005800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.963877 B = 4472.620102 C = 4826.087521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.089 0.911 4 C -0.106 4.106 5 C 0.048 3.952 6 N -0.546 5.546 7 C 0.084 3.916 8 C 0.002 3.998 9 C -0.534 4.534 10 H 0.032 0.968 11 C 0.008 3.992 12 N -0.950 5.950 13 Si 0.950 3.050 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.250 1.250 17 C 0.061 3.939 18 C -0.072 4.072 19 H 0.069 0.931 20 C 0.073 3.927 21 N -0.862 5.862 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.267 0.733 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.341 0.659 39 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 21.284 -5.704 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.080 4.080 6 N -0.271 5.271 7 C -0.044 4.044 8 C -0.036 4.036 9 C -0.573 4.573 10 H 0.050 0.950 11 C -0.189 4.189 12 N -0.591 5.591 13 Si 0.773 3.227 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.174 1.174 17 C -0.067 4.067 18 C -0.091 4.091 19 H 0.087 0.913 20 C -0.058 4.058 21 N -0.394 5.394 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.154 0.846 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.819 21.440 -5.344 22.171 hybrid contribution -1.492 -1.129 0.307 1.896 sum -3.311 20.311 -5.038 21.187 Atomic orbital electron populations 1.21960 0.94981 1.01186 1.02506 1.21142 0.96003 0.99497 0.93509 0.89319 1.21607 1.01175 0.93047 0.98590 1.22199 0.97019 0.95968 0.92786 1.61927 1.60112 1.02179 1.02873 1.21788 0.96486 0.86822 0.99294 1.19422 0.96303 0.93042 0.94817 1.21416 1.27343 0.93336 1.15157 0.94988 1.25957 0.98195 0.94885 0.99843 1.70060 1.46080 1.05428 1.37493 0.85653 0.79036 0.78876 0.79088 1.18982 1.20712 1.17375 1.22164 0.96700 0.95545 0.92309 1.21151 1.00673 0.92712 0.94573 0.91275 1.21811 0.96077 0.98862 0.89037 1.58725 1.66659 1.08907 1.05076 0.91836 0.94192 0.91403 0.91823 0.89957 0.92164 0.95060 0.96720 0.92231 0.96240 0.96474 0.92388 0.91475 0.95264 0.94737 0.90000 0.84621 0.83695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.19 71.98 0.59 -2.11 16 2 C -0.08 -1.63 2.77 -10.71 -0.03 -1.66 16 3 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.11 -2.52 5.60 30.65 0.17 -2.35 16 5 C 0.05 1.49 5.05 86.33 0.44 1.93 16 6 N -0.55 -18.89 4.65 -896.36 -4.17 -23.06 16 7 C 0.08 3.52 4.90 86.30 0.42 3.95 16 8 C 0.00 0.09 3.98 29.85 0.12 0.21 16 9 C -0.53 -31.83 9.66 25.60 0.25 -31.58 16 10 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 11 C 0.01 0.49 5.47 84.65 0.46 0.95 16 12 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 13 Si 0.95 45.62 27.47 68.60 1.88 47.50 16 14 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 16 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 17 C 0.06 1.68 4.25 86.33 0.37 2.05 16 18 C -0.07 -1.61 2.34 -10.74 -0.03 -1.63 16 19 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.07 1.29 5.67 86.30 0.49 1.78 16 21 N -0.86 -15.64 9.62 -186.71 -1.80 -17.44 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.04 0.88 4.92 -2.39 -0.01 0.86 16 24 H 0.07 1.03 6.53 -2.38 -0.02 1.01 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 2.09 6.22 -2.39 -0.01 2.08 16 28 H 0.03 0.96 6.51 -2.39 -0.02 0.94 16 29 H 0.01 0.63 8.12 -2.39 -0.02 0.61 16 30 H 0.06 2.54 7.98 -2.39 -0.02 2.52 16 31 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 32 H 0.02 0.82 5.86 -2.39 -0.01 0.81 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.07 1.89 6.59 -2.39 -0.02 1.87 16 35 H 0.03 0.80 6.51 -2.39 -0.02 0.79 16 36 H 0.03 0.57 6.69 -2.38 -0.02 0.55 16 37 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.34 6.44 7.28 -89.70 -0.65 5.78 16 39 H 0.35 4.79 9.08 -89.70 -0.81 3.98 16 Total: -1.00 -66.80 288.99 -1.02 -67.82 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -0.49 Total: 13.98 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.25 Total: -28.46 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -5.67 Total: -100.85 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -66.80 -1.02 -67.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253179267.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.254 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds