Wall clock time and date at job start Mon Mar 30 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 N 1.46901 * 109.47070 * 120.00065 * 2 1 3 5 5 C 1.46846 * 110.99923 * 299.21020 * 4 2 1 6 6 C 1.53042 * 109.52418 * 174.16166 * 5 4 2 7 7 C 1.53207 * 109.29872 * 59.17581 * 6 5 4 8 8 C 1.53122 * 109.11629 * 302.37537 * 7 6 5 9 9 N 1.46904 * 109.49955 * 177.59769 * 8 7 6 10 10 C 1.50706 * 109.50163 * 297.67096 * 8 7 6 11 11 H 1.08000 * 119.99750 * 123.02741 * 10 8 7 12 12 C 1.37877 * 120.00129 * 303.03104 * 10 8 7 13 13 N 1.31516 * 119.99787 * 353.11946 * 12 10 8 14 14 Si 1.86795 * 119.99979 * 172.84094 * 12 10 8 15 15 H 1.48504 * 109.46997 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47004 * 119.99908 * 14 12 10 17 17 H 1.48498 * 109.47242 * 240.00092 * 14 12 10 18 18 C 1.46850 * 110.99966 * 174.99748 * 4 2 1 19 19 H 1.09002 * 109.45813 * 65.82462 * 18 4 2 20 20 C 1.52997 * 109.45619 * 305.85121 * 18 4 2 21 21 H 1.08996 * 109.47144 * 299.99932 * 1 2 3 22 22 H 1.08998 * 109.47407 * 60.00043 * 1 2 3 23 23 H 1.09009 * 109.47355 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47378 * 240.00024 * 2 1 3 25 25 H 1.08993 * 109.47174 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47406 * 300.00177 * 3 2 1 27 27 H 1.09005 * 109.46933 * 59.99751 * 3 2 1 28 28 H 1.08997 * 109.46303 * 294.17678 * 5 4 2 29 29 H 1.08999 * 109.45961 * 54.15733 * 5 4 2 30 30 H 1.08994 * 109.50260 * 179.12202 * 6 5 4 31 31 H 1.09002 * 109.50091 * 299.19882 * 6 5 4 32 32 H 1.08994 * 109.57577 * 182.46228 * 7 6 5 33 33 H 1.08998 * 109.50916 * 62.24722 * 7 6 5 34 34 H 1.00904 * 111.00081 * 53.37363 * 9 8 7 35 35 H 1.00900 * 110.99346 * 177.32481 * 9 8 7 36 36 H 0.96998 * 120.00067 * 5.37300 * 13 12 10 37 37 H 1.08996 * 109.47288 * 299.95208 * 20 18 4 38 38 H 1.08999 * 109.47149 * 59.94886 * 20 18 4 39 39 H 1.09000 * 109.47242 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5642 -0.0158 2.4205 6 6 1.9680 -0.8419 3.6440 7 6 3.4914 -1.0036 3.6654 8 6 3.9437 -1.6664 2.3613 9 7 5.4087 -1.7734 2.3480 10 6 3.3378 -3.0426 2.2599 11 1 2.7303 -3.3035 1.4059 12 6 3.5590 -3.9685 3.2573 13 7 4.4054 -3.7002 4.2275 14 14 2.6507 -5.6006 3.2347 15 1 1.7581 -5.6539 2.0491 16 1 3.6325 -6.7125 3.1650 17 1 1.8399 -5.7330 4.4718 18 6 3.4827 -0.8165 1.1751 19 1 3.9322 0.1743 1.2417 20 6 3.9157 -1.4860 -0.1306 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 2.0228 0.9711 2.4813 29 1 0.4796 0.0886 2.3949 30 1 1.6436 -0.3316 4.5508 31 1 1.4981 -1.8240 3.5911 32 1 3.7805 -1.6280 4.5107 33 1 3.9602 -0.0239 3.7578 34 1 5.7452 -2.2352 3.1797 35 1 5.7291 -2.2471 1.5167 36 1 4.8149 -2.8228 4.2851 37 1 3.4665 -2.4769 -0.1973 38 1 3.5874 -0.8808 -0.9756 39 1 5.0017 -1.5778 -0.1492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260809617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:15 Heat of formation + Delta-G solvation = 9.990672 kcal Electronic energy + Delta-G solvation = -17723.612662 eV Core-core repulsion = 15280.195346 eV Total energy + Delta-G solvation = -2443.417317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33198 -35.90996 -32.55385 -31.96445 -30.05983 -27.90814 -26.92527 -25.75348 -24.79062 -22.76526 -20.61908 -19.26368 -18.44751 -16.55198 -15.63325 -14.96320 -14.36314 -13.93785 -13.80713 -13.47479 -13.18666 -12.97112 -12.58490 -11.98602 -11.86794 -11.56495 -11.46832 -11.33118 -11.14447 -10.91455 -10.74768 -10.60814 -10.52602 -10.23614 -10.08320 -9.76429 -9.57845 -9.10808 -8.94586 -8.36194 -7.42878 -7.05907 -6.11848 -3.97185 3.46914 3.49001 3.64358 4.52411 4.57122 5.20693 5.39544 5.40586 5.57090 5.71757 5.78644 5.83952 5.88537 5.98353 6.04355 6.10618 6.15726 6.20305 6.22598 6.33304 6.45648 6.51868 6.57236 6.64765 6.73406 6.77896 6.96263 7.10832 7.25101 7.36300 7.47976 7.93961 8.02006 8.18166 8.49398 8.77337 8.86358 8.99575 9.70304 11.07893 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.010941 C = 0.010304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.355146 B = 2558.521973 C = 2716.656679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 C -0.185 4.185 4 N -0.507 5.507 5 C 0.061 3.939 6 C -0.101 4.101 7 C -0.114 4.114 8 C 0.226 3.774 9 N -0.860 5.860 10 C -0.579 4.579 11 H 0.058 0.942 12 C 0.020 3.980 13 N -0.928 5.928 14 Si 1.066 2.934 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.290 1.290 18 C 0.114 3.886 19 H 0.019 0.981 20 C -0.137 4.137 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.338 0.662 35 H 0.322 0.678 36 H 0.273 0.727 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 6.676 -6.032 10.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.040 4.040 3 C -0.244 4.244 4 N -0.231 5.231 5 C -0.066 4.066 6 C -0.139 4.139 7 C -0.153 4.153 8 C 0.136 3.864 9 N -0.391 5.391 10 C -0.620 4.620 11 H 0.076 0.924 12 C -0.183 4.183 13 N -0.572 5.572 14 Si 0.896 3.104 15 H -0.216 1.216 16 H -0.219 1.219 17 H -0.217 1.217 18 C 0.005 3.995 19 H 0.037 0.963 20 C -0.195 4.195 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.239 5.558 -5.246 9.266 hybrid contribution 0.237 1.295 -0.706 1.494 sum -5.002 6.854 -5.952 10.364 Atomic orbital electron populations 1.21850 0.95210 1.02163 1.00719 1.21765 0.95065 0.91825 0.95318 1.22479 1.01647 0.98935 1.01353 1.62008 1.11777 1.49153 1.00149 1.22046 0.98794 0.94711 0.91096 1.21416 0.97486 1.00675 0.94344 1.21705 0.94366 0.98074 1.01109 1.18460 0.84883 0.93536 0.89567 1.59518 1.12792 1.59504 1.07335 1.22516 1.33727 0.97523 1.08217 0.92421 1.25636 0.95838 1.03612 0.93212 1.70900 1.27172 1.24094 1.35019 0.83585 0.75880 0.75423 0.75503 1.21625 1.21938 1.21676 1.21336 0.85360 0.96197 0.96586 0.96329 1.21859 1.00516 1.01577 0.95530 0.92871 0.93173 0.91922 0.89984 0.92600 0.93027 0.92755 0.96368 0.91904 0.94063 0.90240 0.90840 0.95584 0.84618 0.86680 0.90969 0.91134 0.94756 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.99 37.16 0.33 -1.64 16 2 C 0.07 1.10 2.57 -67.72 -0.17 0.93 16 3 C -0.19 -2.68 8.50 37.16 0.32 -2.37 16 4 N -0.51 -9.77 4.07 -218.76 -0.89 -10.66 16 5 C 0.06 1.15 4.64 -3.83 -0.02 1.13 16 6 C -0.10 -2.13 5.84 -26.60 -0.16 -2.28 16 7 C -0.11 -2.65 4.71 -26.56 -0.13 -2.78 16 8 C 0.23 5.31 0.44 -132.67 -0.06 5.25 16 9 N -0.86 -19.95 8.77 -0.12 0.00 -19.95 16 10 C -0.58 -15.00 6.00 -34.44 -0.21 -15.21 16 11 H 0.06 1.57 6.54 -52.49 -0.34 1.23 16 12 C 0.02 0.53 5.17 -17.82 -0.09 0.43 16 13 N -0.93 -26.17 12.55 55.43 0.70 -25.47 16 14 Si 1.07 25.04 29.91 -169.99 -5.08 19.96 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 C 0.11 2.36 1.38 -67.73 -0.09 2.27 16 19 H 0.02 0.41 6.73 -51.93 -0.35 0.06 16 20 C -0.14 -2.65 8.20 37.16 0.30 -2.34 16 21 H 0.05 0.72 6.30 -51.93 -0.33 0.40 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 24 H 0.08 1.32 5.92 -51.93 -0.31 1.02 16 25 H 0.05 0.87 6.65 -51.93 -0.35 0.53 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.79 6.52 -51.93 -0.34 0.45 16 28 H 0.02 0.34 6.62 -51.93 -0.34 -0.01 16 29 H 0.06 1.06 6.03 -51.93 -0.31 0.75 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.86 7.36 -51.93 -0.38 1.48 16 32 H 0.07 1.89 5.30 -51.93 -0.28 1.62 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.34 8.35 6.10 -39.29 -0.24 8.11 16 35 H 0.32 7.28 7.29 -39.29 -0.29 6.99 16 36 H 0.27 7.55 3.40 -40.82 -0.14 7.41 16 37 H 0.07 1.48 6.51 -51.93 -0.34 1.14 16 38 H 0.03 0.58 6.21 -51.93 -0.32 0.25 16 39 H 0.05 1.00 6.75 -51.93 -0.35 0.65 16 LS Contribution 273.99 15.07 4.13 4.13 Total: -1.00 -27.19 273.99 -7.03 -34.22 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -5.91 Total: 14.39 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 0.03 Total: -16.61 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.20 Total: -56.08 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.19 -7.03 -34.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.209 kcal (2) G-P(sol) polarization free energy of solvation -27.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds