Wall clock time and date at job start Mon Mar 30 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47205 * 2 1 4 4 N 1.46901 * 109.47070 * 120.00065 * 2 1 3 5 5 C 1.46846 * 110.99923 * 299.21020 * 4 2 1 6 6 C 1.53042 * 109.52418 * 174.16166 * 5 4 2 7 7 C 1.53207 * 109.29872 * 59.17581 * 6 5 4 8 8 C 1.53122 * 109.11629 * 302.37537 * 7 6 5 9 9 N 1.46904 * 109.49955 * 177.59769 * 8 7 6 10 10 C 1.50706 * 109.50163 * 297.67096 * 8 7 6 11 11 H 1.08000 * 119.99750 * 123.02741 * 10 8 7 12 12 C 1.37877 * 120.00129 * 303.03104 * 10 8 7 13 13 N 1.31516 * 119.99787 * 353.11946 * 12 10 8 14 14 Si 1.86795 * 119.99979 * 172.84094 * 12 10 8 15 15 H 1.48504 * 109.46997 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47004 * 119.99908 * 14 12 10 17 17 H 1.48498 * 109.47242 * 240.00092 * 14 12 10 18 18 C 1.46850 * 110.99966 * 174.99748 * 4 2 1 19 19 H 1.09002 * 109.45813 * 65.82462 * 18 4 2 20 20 C 1.52997 * 109.45619 * 305.85121 * 18 4 2 21 21 H 1.08996 * 109.47144 * 299.99932 * 1 2 3 22 22 H 1.08998 * 109.47407 * 60.00043 * 1 2 3 23 23 H 1.09009 * 109.47355 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47378 * 240.00024 * 2 1 3 25 25 H 1.08993 * 109.47174 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47406 * 300.00177 * 3 2 1 27 27 H 1.09005 * 109.46933 * 59.99751 * 3 2 1 28 28 H 1.08997 * 109.46303 * 294.17678 * 5 4 2 29 29 H 1.08999 * 109.45961 * 54.15733 * 5 4 2 30 30 H 1.08994 * 109.50260 * 179.12202 * 6 5 4 31 31 H 1.09002 * 109.50091 * 299.19882 * 6 5 4 32 32 H 1.08994 * 109.57577 * 182.46228 * 7 6 5 33 33 H 1.08998 * 109.50916 * 62.24722 * 7 6 5 34 34 H 1.00904 * 111.00081 * 53.37363 * 9 8 7 35 35 H 1.00900 * 110.99346 * 177.32481 * 9 8 7 36 36 H 0.96998 * 120.00067 * 5.37300 * 13 12 10 37 37 H 1.08996 * 109.47288 * 299.95208 * 20 18 4 38 38 H 1.08999 * 109.47149 * 59.94886 * 20 18 4 39 39 H 1.09000 * 109.47242 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5642 -0.0158 2.4205 6 6 1.9680 -0.8419 3.6440 7 6 3.4914 -1.0036 3.6654 8 6 3.9437 -1.6664 2.3613 9 7 5.4087 -1.7734 2.3480 10 6 3.3378 -3.0426 2.2599 11 1 2.7303 -3.3035 1.4059 12 6 3.5590 -3.9685 3.2573 13 7 4.4054 -3.7002 4.2275 14 14 2.6507 -5.6006 3.2347 15 1 1.7581 -5.6539 2.0491 16 1 3.6325 -6.7125 3.1650 17 1 1.8399 -5.7330 4.4718 18 6 3.4827 -0.8165 1.1751 19 1 3.9322 0.1743 1.2417 20 6 3.9157 -1.4860 -0.1306 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4425 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 2.0228 0.9711 2.4813 29 1 0.4796 0.0886 2.3949 30 1 1.6436 -0.3316 4.5508 31 1 1.4981 -1.8240 3.5911 32 1 3.7805 -1.6280 4.5107 33 1 3.9602 -0.0239 3.7578 34 1 5.7452 -2.2352 3.1797 35 1 5.7291 -2.2471 1.5167 36 1 4.8149 -2.8228 4.2851 37 1 3.4665 -2.4769 -0.1973 38 1 3.5874 -0.8808 -0.9756 39 1 5.0017 -1.5778 -0.1492 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260809617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:14 Heat of formation + Delta-G solvation = -7.967970 kcal Electronic energy + Delta-G solvation = -17724.391407 eV Core-core repulsion = 15280.195346 eV Total energy + Delta-G solvation = -2444.196062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92638 -37.56094 -34.19863 -33.72196 -31.77744 -29.53654 -28.06411 -27.48887 -26.70551 -24.33137 -22.28002 -20.90693 -20.13311 -18.38505 -17.07823 -16.69804 -15.96142 -15.76961 -15.21254 -15.05136 -14.93011 -14.52379 -13.99338 -13.58468 -13.51161 -13.12745 -12.94075 -12.80507 -12.68550 -12.60260 -12.34250 -12.22602 -12.04035 -11.93224 -11.71010 -11.46310 -11.15864 -11.04708 -10.64438 -10.40255 -9.10220 -8.83950 -8.20022 -6.07944 1.55049 1.60517 1.77827 2.62520 3.07118 3.35998 3.97556 4.06848 4.12909 4.22152 4.29488 4.40631 4.48884 4.53217 4.62356 4.65206 4.77015 4.82265 4.85064 4.91608 4.94301 4.99441 5.11522 5.18941 5.22124 5.36219 5.40871 5.46275 5.47557 5.59813 5.66339 6.20431 6.37058 6.42956 6.55603 6.81814 6.85718 7.01017 7.64381 8.98052 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.029394 B = 0.010941 C = 0.010304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.355146 B = 2558.521973 C = 2716.656679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 C -0.178 4.178 4 N -0.524 5.524 5 C 0.067 3.933 6 C -0.098 4.098 7 C -0.111 4.111 8 C 0.217 3.783 9 N -0.853 5.853 10 C -0.569 4.569 11 H 0.043 0.957 12 C -0.024 4.024 13 N -0.953 5.953 14 Si 1.103 2.897 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.290 1.290 18 C 0.120 3.880 19 H 0.013 0.987 20 C -0.129 4.129 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.027 0.973 34 H 0.328 0.672 35 H 0.324 0.676 36 H 0.269 0.731 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 7.746 -7.322 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.043 4.043 3 C -0.236 4.236 4 N -0.249 5.249 5 C -0.061 4.061 6 C -0.137 4.137 7 C -0.150 4.150 8 C 0.126 3.874 9 N -0.384 5.384 10 C -0.609 4.609 11 H 0.061 0.939 12 C -0.222 4.222 13 N -0.598 5.598 14 Si 0.930 3.070 15 H -0.206 1.206 16 H -0.217 1.217 17 H -0.217 1.217 18 C 0.011 3.989 19 H 0.030 0.970 20 C -0.186 4.186 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.515 6.644 -6.559 11.385 hybrid contribution 0.635 0.999 -0.327 1.228 sum -5.880 7.643 -6.886 11.849 Atomic orbital electron populations 1.21810 0.93406 1.01905 1.02245 1.21884 0.96464 0.92421 0.93514 1.22390 1.00659 0.97949 1.02635 1.61971 1.10559 1.50687 1.01667 1.22000 1.00110 0.94215 0.89765 1.21368 0.95497 0.99970 0.96819 1.21646 0.96146 0.97320 0.99892 1.18586 0.84688 0.93069 0.91042 1.59552 1.12794 1.59095 1.06919 1.22597 1.32634 0.98620 1.07096 0.93872 1.26577 0.96179 1.06219 0.93183 1.70957 1.28542 1.24267 1.36014 0.83064 0.75212 0.72990 0.75706 1.20618 1.21731 1.21656 1.21159 0.86664 0.95213 0.95831 0.96963 1.21761 1.00308 1.00693 0.95885 0.92501 0.90501 0.93072 0.90185 0.94006 0.90470 0.92742 0.95641 0.89700 0.92151 0.93042 0.93751 0.95455 0.85736 0.86463 0.91457 0.93160 0.92160 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.99 71.98 0.65 -2.68 16 2 C 0.07 1.90 2.57 44.91 0.12 2.01 16 3 C -0.18 -4.55 8.50 71.98 0.61 -3.94 16 4 N -0.52 -19.32 4.07 -846.03 -3.45 -22.76 16 5 C 0.07 2.36 4.64 86.33 0.40 2.76 16 6 C -0.10 -4.07 5.84 30.68 0.18 -3.89 16 7 C -0.11 -5.21 4.71 30.70 0.14 -5.07 16 8 C 0.22 10.19 0.44 2.83 0.00 10.19 16 9 N -0.85 -39.89 8.77 -154.30 -1.35 -41.24 16 10 C -0.57 -29.62 6.00 25.60 0.15 -29.47 16 11 H 0.04 2.35 6.54 -2.91 -0.02 2.33 16 12 C -0.02 -1.28 5.17 84.65 0.44 -0.84 16 13 N -0.95 -54.61 12.55 21.45 0.27 -54.34 16 14 Si 1.10 50.80 29.91 68.60 2.05 52.85 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 17 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 18 C 0.12 4.87 1.38 44.93 0.06 4.93 16 19 H 0.01 0.53 6.73 -2.39 -0.02 0.51 16 20 C -0.13 -4.82 8.20 71.98 0.59 -4.23 16 21 H 0.06 1.34 6.30 -2.39 -0.02 1.32 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 23 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 24 H 0.08 2.35 5.92 -2.38 -0.01 2.34 16 25 H 0.04 1.19 6.65 -2.39 -0.02 1.17 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.39 6.52 -2.38 -0.02 1.38 16 28 H 0.03 0.87 6.62 -2.39 -0.02 0.86 16 29 H 0.08 2.63 6.03 -2.39 -0.01 2.61 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.41 7.36 -2.39 -0.02 2.39 16 32 H 0.04 2.33 5.30 -2.39 -0.01 2.32 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.33 16.55 6.10 -89.69 -0.55 16.00 16 35 H 0.32 14.71 7.29 -89.69 -0.65 14.05 16 36 H 0.27 15.25 3.40 -92.71 -0.31 14.94 16 37 H 0.05 2.07 6.51 -2.39 -0.02 2.06 16 38 H 0.06 1.91 6.21 -2.39 -0.01 1.89 16 39 H 0.05 1.93 6.75 -2.39 -0.02 1.91 16 Total: -1.00 -57.71 273.99 1.17 -56.54 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.31 Total: 39.16 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.34 Total: -30.22 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -4.53 Total: -118.34 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.85 kcal Total: -57.71 1.17 -56.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.575 kcal (2) G-P(sol) polarization free energy of solvation -57.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds