Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47405 * 2 1 4 4 N 1.46899 * 109.47368 * 120.00522 * 2 1 3 5 5 C 1.46843 * 111.00017 * 299.20559 * 4 2 1 6 6 C 1.53038 * 109.52415 * 174.16036 * 5 4 2 7 7 C 1.53116 * 109.28034 * 59.17999 * 6 5 4 8 8 C 1.53121 * 109.16058 * 302.34574 * 7 6 5 9 9 N 1.46893 * 109.53560 * 297.69253 * 8 7 6 10 10 C 1.50701 * 109.50138 * 177.59200 * 8 7 6 11 11 H 1.08002 * 119.99761 * 240.19217 * 10 8 7 12 12 C 1.37871 * 119.99694 * 60.47780 * 10 8 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 C 1.46851 * 111.00125 * 174.99369 * 4 2 1 19 19 H 1.09002 * 109.45689 * 65.82443 * 18 4 2 20 20 C 1.52996 * 109.45505 * 305.84906 * 18 4 2 21 21 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46517 * 299.99407 * 1 2 3 23 23 H 1.08992 * 109.47211 * 59.99596 * 1 2 3 24 24 H 1.09007 * 109.46964 * 240.00305 * 2 1 3 25 25 H 1.09007 * 109.47276 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47490 * 300.00000 * 3 2 1 27 27 H 1.09000 * 109.47239 * 60.00740 * 3 2 1 28 28 H 1.09000 * 109.46401 * 294.17924 * 5 4 2 29 29 H 1.09004 * 109.46167 * 54.15536 * 5 4 2 30 30 H 1.09007 * 109.50088 * 179.12496 * 6 5 4 31 31 H 1.08999 * 109.50221 * 299.19563 * 6 5 4 32 32 H 1.08998 * 109.52185 * 182.44141 * 7 6 5 33 33 H 1.08998 * 109.51986 * 62.24900 * 7 6 5 34 34 H 1.00899 * 111.00134 * 299.90558 * 9 8 7 35 35 H 1.00909 * 110.99931 * 63.85522 * 9 8 7 36 36 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.47158 * 299.95334 * 20 18 4 38 38 H 1.09002 * 109.46736 * 59.95631 * 20 18 4 39 39 H 1.08997 * 109.47199 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.5645 -0.0160 2.4205 6 6 1.9683 -0.8421 3.6438 7 6 3.4908 -1.0035 3.6647 8 6 3.9439 -1.6667 2.3611 9 7 3.3540 -3.0083 2.2617 10 6 5.4469 -1.7756 2.3479 11 1 6.0168 -1.2875 1.5712 12 6 6.0938 -2.5032 3.3241 13 7 5.3998 -3.0976 4.2699 14 14 7.9563 -2.6447 3.3033 15 1 8.5569 -1.2905 3.4079 16 1 8.4026 -3.4737 4.4518 17 1 8.3903 -3.2820 2.0341 18 6 3.4828 -0.8166 1.1749 19 1 3.9323 0.1741 1.2416 20 6 3.9157 -1.4862 -0.1309 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6769 1.9563 0.8900 28 1 2.0230 0.9710 2.4813 29 1 0.4798 0.0885 2.3950 30 1 1.6439 -0.3318 4.5508 31 1 1.4983 -1.8242 3.5910 32 1 3.7793 -1.6277 4.5104 33 1 3.9596 -0.0238 3.7571 34 1 3.6427 -3.5885 3.0350 35 1 2.3478 -2.9576 2.2037 36 1 5.8549 -3.6098 4.9564 37 1 3.4664 -2.4770 -0.1975 38 1 3.5874 -0.8808 -0.9758 39 1 5.0016 -1.5780 -0.1495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260809621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = 0.406863 kcal Electronic energy + Delta-G solvation = -17540.733005 eV Core-core repulsion = 15096.900104 eV Total energy + Delta-G solvation = -2443.832902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.26338 -35.50265 -32.52742 -31.69161 -30.09299 -27.88801 -26.90178 -25.94607 -24.79318 -22.78684 -20.54564 -19.37459 -17.62578 -16.41221 -15.25385 -15.11267 -14.38591 -14.05696 -13.79090 -13.37942 -13.26753 -12.51608 -12.46411 -12.18412 -11.77844 -11.62015 -11.37747 -11.30756 -10.97491 -10.92601 -10.85455 -10.77269 -10.56931 -10.08728 -10.02568 -9.93249 -9.67526 -8.92172 -8.76893 -8.45677 -7.50317 -6.69474 -5.97359 -4.01794 3.33950 3.38421 3.41669 4.41752 4.59632 5.21632 5.29730 5.40839 5.57458 5.69935 5.80270 5.83014 5.93852 6.03909 6.07578 6.16578 6.19954 6.25180 6.40565 6.48248 6.51350 6.55334 6.70875 6.74241 6.80397 6.90364 7.02762 7.31623 7.38588 7.45904 7.80584 7.83813 7.94237 8.11651 8.43614 8.85234 9.28271 9.50348 9.67015 11.08438 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039492 B = 0.009276 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.828863 B = 3017.658842 C = 3306.763517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 C -0.185 4.185 4 N -0.522 5.522 5 C 0.056 3.944 6 C -0.120 4.120 7 C -0.144 4.144 8 C 0.259 3.741 9 N -0.834 5.834 10 C -0.492 4.492 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.100 3.900 19 H 0.024 0.976 20 C -0.125 4.125 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.024 0.976 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.350 0.650 35 H 0.304 0.696 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 5.515 -4.662 10.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.244 4.244 4 N -0.247 5.247 5 C -0.072 4.072 6 C -0.158 4.158 7 C -0.184 4.184 8 C 0.167 3.833 9 N -0.366 5.366 10 C -0.532 4.532 11 H 0.073 0.927 12 C -0.130 4.130 13 N -0.537 5.537 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.008 4.008 19 H 0.042 0.958 20 C -0.182 4.182 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.167 0.833 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.140 4.844 -5.180 10.063 hybrid contribution 0.923 1.136 1.055 1.805 sum -6.216 5.980 -4.125 9.561 Atomic orbital electron populations 1.21858 0.95371 1.01984 1.00733 1.21743 0.94794 0.92053 0.95330 1.22461 1.01884 0.98751 1.01281 1.62197 1.12861 1.49295 1.00326 1.22089 0.98656 0.95432 0.90996 1.21690 0.99694 0.99305 0.95114 1.22431 0.90927 1.00497 1.04590 1.18208 0.92777 0.85636 0.86728 1.59162 1.10497 1.14394 1.52538 1.21029 0.90597 1.31065 1.10472 0.92652 1.24885 0.97925 0.95074 0.95147 1.69627 1.35073 1.34241 1.14717 0.86664 0.86010 0.77811 0.77426 1.20631 1.21471 1.20315 1.21718 0.84028 0.97038 0.98004 0.95774 1.21689 1.01538 1.00828 0.94170 0.92053 0.92976 0.93164 0.89721 0.92377 0.93042 0.92826 0.95830 0.92097 0.93745 0.92294 0.89125 0.94965 0.83307 0.88467 0.92941 0.91278 0.95755 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.99 37.16 0.33 -1.51 16 2 C 0.07 1.06 2.57 -67.72 -0.17 0.89 16 3 C -0.18 -2.66 8.50 37.15 0.32 -2.34 16 4 N -0.52 -9.44 3.78 -218.76 -0.83 -10.26 16 5 C 0.06 0.99 4.63 -3.84 -0.02 0.97 16 6 C -0.12 -2.32 5.76 -26.65 -0.15 -2.47 16 7 C -0.14 -3.35 4.70 -26.61 -0.13 -3.48 16 8 C 0.26 6.14 0.34 -132.67 -0.04 6.10 16 9 N -0.83 -19.80 7.98 -0.13 0.00 -19.80 16 10 C -0.49 -13.09 7.49 -34.44 -0.26 -13.35 16 11 H 0.06 1.48 6.77 -52.49 -0.36 1.13 16 12 C 0.07 1.89 5.21 -17.82 -0.09 1.79 16 13 N -0.90 -24.24 9.58 55.43 0.53 -23.71 16 14 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.10 2.09 1.25 -67.72 -0.08 2.00 16 19 H 0.02 0.54 6.73 -51.93 -0.35 0.19 16 20 C -0.12 -2.51 8.37 37.16 0.31 -2.20 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.66 6.30 -51.93 -0.33 0.34 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 1.33 5.92 -51.93 -0.31 1.02 16 25 H 0.06 0.92 6.65 -51.93 -0.35 0.57 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.77 6.52 -51.93 -0.34 0.43 16 28 H 0.02 0.42 6.62 -51.93 -0.34 0.08 16 29 H 0.06 0.95 6.03 -51.93 -0.31 0.64 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.16 6.90 -51.93 -0.36 0.80 16 32 H 0.09 2.34 6.18 -51.93 -0.32 2.02 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.35 8.99 6.91 -39.29 -0.27 8.72 16 35 H 0.30 6.80 6.76 -39.29 -0.27 6.53 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 37 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 38 H 0.02 0.42 6.21 -51.93 -0.32 0.10 16 39 H 0.06 1.30 6.68 -51.93 -0.35 0.95 16 LS Contribution 277.80 15.07 4.19 4.19 Total: -1.00 -26.03 277.80 -7.33 -33.36 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.21 Total: 13.67 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 0.01 Total: -13.59 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.30 Total: -53.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.03 -7.33 -33.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.765 kcal (2) G-P(sol) polarization free energy of solvation -26.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds