Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47405 * 2 1 4 4 N 1.46899 * 109.47368 * 120.00522 * 2 1 3 5 5 C 1.46843 * 111.00017 * 299.20559 * 4 2 1 6 6 C 1.53038 * 109.52415 * 174.16036 * 5 4 2 7 7 C 1.53116 * 109.28034 * 59.17999 * 6 5 4 8 8 C 1.53121 * 109.16058 * 302.34574 * 7 6 5 9 9 N 1.46893 * 109.53560 * 297.69253 * 8 7 6 10 10 C 1.50701 * 109.50138 * 177.59200 * 8 7 6 11 11 H 1.08002 * 119.99761 * 240.19217 * 10 8 7 12 12 C 1.37871 * 119.99694 * 60.47780 * 10 8 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48504 * 109.47266 * 60.00049 * 14 12 10 16 16 H 1.48504 * 109.46970 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47383 * 299.99456 * 14 12 10 18 18 C 1.46851 * 111.00125 * 174.99369 * 4 2 1 19 19 H 1.09002 * 109.45689 * 65.82443 * 18 4 2 20 20 C 1.52996 * 109.45505 * 305.84906 * 18 4 2 21 21 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46517 * 299.99407 * 1 2 3 23 23 H 1.08992 * 109.47211 * 59.99596 * 1 2 3 24 24 H 1.09007 * 109.46964 * 240.00305 * 2 1 3 25 25 H 1.09007 * 109.47276 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47490 * 300.00000 * 3 2 1 27 27 H 1.09000 * 109.47239 * 60.00740 * 3 2 1 28 28 H 1.09000 * 109.46401 * 294.17924 * 5 4 2 29 29 H 1.09004 * 109.46167 * 54.15536 * 5 4 2 30 30 H 1.09007 * 109.50088 * 179.12496 * 6 5 4 31 31 H 1.08999 * 109.50221 * 299.19563 * 6 5 4 32 32 H 1.08998 * 109.52185 * 182.44141 * 7 6 5 33 33 H 1.08998 * 109.51986 * 62.24900 * 7 6 5 34 34 H 1.00899 * 111.00134 * 299.90558 * 9 8 7 35 35 H 1.00909 * 110.99931 * 63.85522 * 9 8 7 36 36 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 37 37 H 1.08995 * 109.47158 * 299.95334 * 20 18 4 38 38 H 1.09002 * 109.46736 * 59.95631 * 20 18 4 39 39 H 1.08997 * 109.47199 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.5645 -0.0160 2.4205 6 6 1.9683 -0.8421 3.6438 7 6 3.4908 -1.0035 3.6647 8 6 3.9439 -1.6667 2.3611 9 7 3.3540 -3.0083 2.2617 10 6 5.4469 -1.7756 2.3479 11 1 6.0168 -1.2875 1.5712 12 6 6.0938 -2.5032 3.3241 13 7 5.3998 -3.0976 4.2699 14 14 7.9563 -2.6447 3.3033 15 1 8.5569 -1.2905 3.4079 16 1 8.4026 -3.4737 4.4518 17 1 8.3903 -3.2820 2.0341 18 6 3.4828 -0.8166 1.1749 19 1 3.9323 0.1741 1.2416 20 6 3.9157 -1.4862 -0.1309 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6769 1.9563 0.8900 28 1 2.0230 0.9710 2.4813 29 1 0.4798 0.0885 2.3950 30 1 1.6439 -0.3318 4.5508 31 1 1.4983 -1.8242 3.5910 32 1 3.7793 -1.6277 4.5104 33 1 3.9596 -0.0238 3.7571 34 1 3.6427 -3.5885 3.0350 35 1 2.3478 -2.9576 2.2037 36 1 5.8549 -3.6098 4.9564 37 1 3.4664 -2.4770 -0.1975 38 1 3.5874 -0.8808 -0.9758 39 1 5.0016 -1.5780 -0.1495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260809621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = -16.409762 kcal Electronic energy + Delta-G solvation = -17541.462229 eV Core-core repulsion = 15096.900104 eV Total energy + Delta-G solvation = -2444.562125 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80901 -37.10685 -34.26268 -33.41383 -31.71122 -29.58100 -28.02073 -27.77755 -26.53212 -24.35840 -22.18654 -20.89569 -19.23356 -18.27576 -17.02850 -16.65237 -16.02572 -15.63010 -15.36292 -14.88916 -14.84114 -14.18998 -13.91746 -13.77755 -13.28786 -13.08917 -12.88576 -12.79340 -12.77811 -12.63948 -12.37919 -12.33453 -12.08186 -11.74341 -11.69475 -11.56882 -11.28961 -10.71614 -10.56679 -10.46660 -8.97499 -8.58606 -8.00784 -6.11164 1.42407 1.44053 1.50105 2.46681 3.15558 3.24341 4.04818 4.14664 4.21929 4.32282 4.43148 4.48497 4.59904 4.62345 4.71076 4.82984 4.87433 4.88916 4.95330 4.99819 5.02583 5.07908 5.18116 5.27706 5.30620 5.44262 5.48721 5.49599 5.57867 5.73050 5.80833 6.16130 6.20778 6.51617 6.56543 6.83378 7.31238 7.53665 7.64882 9.01806 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039492 B = 0.009276 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.828863 B = 3017.658842 C = 3306.763517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 C -0.179 4.179 4 N -0.526 5.526 5 C 0.061 3.939 6 C -0.113 4.113 7 C -0.138 4.138 8 C 0.251 3.749 9 N -0.831 5.831 10 C -0.512 4.512 11 H 0.044 0.956 12 C 0.029 3.971 13 N -0.909 5.909 14 Si 0.944 3.056 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.278 1.278 18 C 0.109 3.891 19 H 0.008 0.992 20 C -0.115 4.115 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.014 0.986 34 H 0.338 0.662 35 H 0.313 0.687 36 H 0.259 0.741 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 6.348 -5.599 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 C -0.238 4.238 4 N -0.251 5.251 5 C -0.067 4.067 6 C -0.151 4.151 7 C -0.179 4.179 8 C 0.159 3.841 9 N -0.362 5.362 10 C -0.551 4.551 11 H 0.062 0.938 12 C -0.170 4.170 13 N -0.550 5.550 14 Si 0.772 3.228 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.204 1.204 18 C 0.000 4.000 19 H 0.026 0.974 20 C -0.172 4.172 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.153 0.847 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.556 5.689 -6.131 11.965 hybrid contribution 1.347 0.893 1.333 2.095 sum -7.208 6.582 -4.798 10.877 Atomic orbital electron populations 1.21802 0.93028 1.02231 1.02151 1.21881 0.96584 0.92217 0.93638 1.22397 1.00542 0.98322 1.02544 1.62155 1.10622 1.50477 1.01799 1.22082 1.00246 0.94592 0.89797 1.21609 0.96490 0.99890 0.97148 1.22258 0.93849 0.98601 1.03167 1.18238 0.91532 0.86096 0.88257 1.59111 1.11085 1.14274 1.51777 1.21335 0.92520 1.31045 1.10198 0.93764 1.25484 1.01280 0.95127 0.95091 1.69742 1.35981 1.34424 1.14854 0.85841 0.82107 0.77646 0.77219 1.20462 1.21150 1.20379 1.21433 0.86081 0.95508 0.96963 0.97406 1.21561 1.00044 1.00624 0.94996 0.92391 0.92511 0.90818 0.90023 0.94383 0.90559 0.92779 0.96111 0.89193 0.92032 0.92554 0.92145 0.96749 0.84702 0.87529 0.93174 0.92390 0.92995 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.99 71.98 0.65 -2.32 16 2 C 0.06 1.80 2.57 44.91 0.12 1.92 16 3 C -0.18 -4.66 8.50 71.98 0.61 -4.05 16 4 N -0.53 -18.06 3.78 -846.02 -3.20 -21.25 16 5 C 0.06 1.99 4.63 86.33 0.40 2.39 16 6 C -0.11 -4.25 5.76 30.65 0.18 -4.07 16 7 C -0.14 -6.51 4.70 30.67 0.14 -6.36 16 8 C 0.25 12.04 0.34 2.84 0.00 12.04 16 9 N -0.83 -39.68 7.98 -154.32 -1.23 -40.92 16 10 C -0.51 -27.76 7.49 25.60 0.19 -27.57 16 11 H 0.04 2.43 6.77 -2.91 -0.02 2.41 16 12 C 0.03 1.59 5.21 84.65 0.44 2.03 16 13 N -0.91 -50.04 9.58 21.45 0.21 -49.84 16 14 Si 0.94 44.00 29.54 68.60 2.03 46.03 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 C 0.11 4.51 1.25 44.94 0.06 4.56 16 19 H 0.01 0.36 6.73 -2.39 -0.02 0.34 16 20 C -0.11 -4.56 8.37 71.98 0.60 -3.96 16 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.06 1.20 6.30 -2.38 -0.02 1.19 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.08 2.33 5.92 -2.38 -0.01 2.31 16 25 H 0.04 1.13 6.65 -2.38 -0.02 1.12 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 1.40 6.52 -2.39 -0.02 1.38 16 28 H 0.02 0.70 6.62 -2.39 -0.02 0.69 16 29 H 0.09 2.48 6.03 -2.38 -0.01 2.47 16 30 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.06 2.14 6.90 -2.39 -0.02 2.12 16 32 H 0.06 3.19 6.18 -2.39 -0.01 3.18 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.34 17.62 6.91 -89.69 -0.62 17.00 16 35 H 0.31 13.82 6.76 -89.69 -0.61 13.22 16 36 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 38 H 0.05 1.74 6.21 -2.39 -0.01 1.72 16 39 H 0.04 1.71 6.68 -2.39 -0.02 1.70 16 Total: -1.00 -55.89 277.80 1.01 -54.88 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.18 Total: 36.50 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.39 Total: -25.39 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.22 Total: -112.01 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -55.89 1.01 -54.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.466 kcal (2) G-P(sol) polarization free energy of solvation -55.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds