Wall clock time and date at job start Mon Mar 30 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46865 * 2 1 4 4 C 1.53044 * 109.46074 * 119.97848 * 2 1 3 5 5 C 1.53111 * 109.28072 * 179.18248 * 4 2 1 6 6 C 1.50703 * 109.52225 * 62.25234 * 5 4 2 7 7 H 1.08006 * 120.00050 * 236.73956 * 6 5 4 8 8 C 1.37876 * 120.00370 * 56.73842 * 6 5 4 9 9 N 1.31518 * 119.99424 * 7.68491 * 8 6 5 10 10 Si 1.86797 * 120.00310 * 187.96283 * 8 6 5 11 11 H 1.48501 * 109.47369 * 179.72543 * 10 8 6 12 12 H 1.48498 * 109.46792 * 299.72360 * 10 8 6 13 13 H 1.48504 * 109.46992 * 59.72083 * 10 8 6 14 14 C 1.53000 * 109.52496 * 182.37775 * 5 4 2 15 15 N 1.46900 * 109.47097 * 173.97969 * 14 5 4 16 16 C 1.53124 * 109.16351 * 302.34852 * 5 4 2 17 17 C 1.53033 * 109.27737 * 57.64830 * 16 5 4 18 18 H 1.09002 * 109.46218 * 180.80595 * 17 16 5 19 19 C 1.53001 * 109.46113 * 60.84363 * 17 16 5 20 20 N 1.46843 * 109.53012 * 300.82662 * 17 16 5 21 21 C 1.46895 * 111.00415 * 185.84002 * 20 17 16 22 22 H 1.08996 * 109.47284 * 300.02876 * 1 2 3 23 23 H 1.09008 * 109.46989 * 60.02166 * 1 2 3 24 24 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.50312 * 59.23989 * 4 2 1 26 26 H 1.09004 * 109.50222 * 299.12469 * 4 2 1 27 27 H 0.96996 * 120.00226 * 356.31061 * 9 8 6 28 28 H 1.09000 * 109.46966 * 293.97748 * 14 5 4 29 29 H 1.09000 * 109.46986 * 53.97829 * 14 5 4 30 30 H 1.00896 * 111.00020 * 61.24114 * 15 14 5 31 31 H 1.00910 * 110.99773 * 185.19126 * 15 14 5 32 32 H 1.09001 * 109.50321 * 177.59676 * 16 5 4 33 33 H 1.08999 * 109.49802 * 297.71339 * 16 5 4 34 34 H 1.09002 * 109.46901 * 292.38552 * 19 17 16 35 35 H 1.09003 * 109.47359 * 52.38222 * 19 17 16 36 36 H 1.08996 * 109.47257 * 172.38514 * 19 17 16 37 37 H 1.08996 * 109.47095 * 295.78929 * 21 20 17 38 38 H 1.09003 * 109.47201 * 55.78901 * 21 20 17 39 39 H 1.08995 * 109.47168 * 175.79030 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5708 -0.7365 1.2355 6 6 4.0892 0.6779 1.2793 7 1 4.7495 1.0353 0.5029 8 6 3.7205 1.5157 2.3104 9 7 3.0424 1.0414 3.3325 10 14 4.1774 3.3260 2.2518 11 1 3.6627 4.0061 3.4674 12 1 5.6551 3.4620 2.1967 13 1 3.5776 3.9490 1.0445 14 6 4.0859 -1.5077 2.4525 15 7 5.5456 -1.6461 2.3625 16 6 4.0545 -1.4193 -0.0469 17 6 3.4862 -0.6781 -1.2591 18 1 3.8171 -1.1703 -2.1737 19 6 3.9832 0.7689 -1.2509 20 7 2.0191 -0.6918 -1.1994 21 6 1.4371 -0.1105 -2.4165 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5135 -0.8903 24 1 -0.3634 -1.0276 0.0005 25 1 1.6656 -1.7447 1.2576 26 1 1.6895 -0.1982 2.1400 27 1 2.7553 0.1148 3.3362 28 1 3.8277 -0.9654 3.3621 29 1 3.6279 -2.4965 2.4765 30 1 5.9949 -0.7428 2.3591 31 1 5.9007 -2.2239 3.1098 32 1 5.1436 -1.3954 -0.0833 33 1 3.7120 -2.4540 -0.0596 34 1 3.5426 1.2996 -0.4068 35 1 5.0694 0.7796 -1.1598 36 1 3.6918 1.2585 -2.1800 37 1 1.7120 0.9421 -2.4837 38 1 1.8161 -0.6414 -3.2898 39 1 0.3516 -0.2009 -2.3791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260937315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:58 Heat of formation + Delta-G solvation = 28.417385 kcal Electronic energy + Delta-G solvation = -17945.596769 eV Core-core repulsion = 15502.978495 eV Total energy + Delta-G solvation = -2442.618274 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.50096 -35.54982 -32.53158 -31.93039 -30.84961 -27.87668 -26.01547 -25.56687 -24.40740 -22.94243 -20.85797 -19.19752 -17.97387 -16.59869 -15.25979 -14.90711 -14.41297 -14.10213 -13.86802 -13.36381 -13.11458 -12.71219 -12.56467 -11.78080 -11.62690 -11.45192 -11.40578 -11.25967 -11.03728 -10.80178 -10.69460 -10.56650 -10.29410 -10.23211 -9.81696 -9.64654 -9.12534 -8.89222 -8.38330 -7.95741 -7.60304 -7.41230 -6.14558 -3.95934 3.38491 3.40842 3.57825 4.49026 4.73396 5.32904 5.62304 5.67800 5.75870 5.86681 5.99130 6.08917 6.10610 6.15715 6.24797 6.29560 6.45034 6.52229 6.57672 6.68546 6.71733 6.74211 6.80366 6.92853 7.01311 7.14089 7.20052 7.30016 7.42880 7.54765 7.59701 8.01319 8.04855 8.25009 8.37477 8.44538 8.56641 8.91188 9.64554 11.03122 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.014226 C = 0.012067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.644302 B = 1967.759982 C = 2319.826168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.092 3.908 3 H 0.057 0.943 4 C -0.104 4.104 5 C 0.060 3.940 6 C -0.585 4.585 7 H 0.075 0.925 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 1.050 2.950 11 H -0.285 1.285 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.060 3.940 15 N -0.842 5.842 16 C -0.074 4.074 17 C 0.094 3.906 18 H 0.052 0.948 19 C -0.202 4.202 20 N -0.533 5.533 21 C 0.022 3.978 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.280 0.720 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.345 0.655 31 H 0.313 0.687 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.127 0.873 35 H 0.049 0.951 36 H 0.014 0.986 37 H 0.021 0.979 38 H 0.054 0.946 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -1.501 -5.567 5.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 H 0.075 0.925 4 C -0.143 4.143 5 C 0.060 3.940 6 C -0.623 4.623 7 H 0.093 0.907 8 C -0.183 4.183 9 N -0.560 5.560 10 Si 0.880 3.120 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.216 1.216 14 C -0.071 4.071 15 N -0.370 5.370 16 C -0.112 4.112 17 C -0.014 4.014 18 H 0.070 0.930 19 C -0.259 4.259 20 N -0.258 5.258 21 C -0.126 4.126 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.158 0.842 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.145 0.855 35 H 0.068 0.932 36 H 0.033 0.967 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.641 -0.919 -5.376 5.695 hybrid contribution 0.353 -0.110 -0.084 0.379 sum -1.288 -1.029 -5.459 5.703 Atomic orbital electron populations 1.21948 0.96646 1.01188 1.00603 1.21482 0.92539 0.97411 0.90089 0.92485 1.21720 0.98514 0.97471 0.96584 1.18307 0.90641 0.94762 0.90326 1.22450 1.31283 0.96339 1.12225 0.90737 1.25534 0.95736 1.04720 0.92319 1.70872 1.36930 1.19008 1.29202 0.83804 0.76136 0.76101 0.75998 1.21062 1.21615 1.21583 1.22082 0.87548 0.96814 1.00661 1.58767 1.06376 1.20594 1.51248 1.21323 0.99420 0.96420 0.94057 1.21496 0.86392 0.95558 0.97964 0.93025 1.23465 1.01387 0.99000 1.02077 1.62254 1.07476 1.54411 1.01677 1.22346 0.99713 0.97285 0.93302 0.92743 0.93597 0.92901 0.95071 0.90811 0.90350 0.93920 0.95302 0.84197 0.87748 0.91878 0.94687 0.85507 0.93210 0.96737 0.96033 0.92761 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.77 37.16 0.33 -2.27 16 2 C 0.09 1.91 2.08 -67.72 -0.14 1.76 16 3 H 0.06 1.32 5.65 -51.93 -0.29 1.03 16 4 C -0.10 -2.33 3.84 -26.65 -0.10 -2.43 16 5 C 0.06 1.36 0.33 -155.54 -0.05 1.31 16 6 C -0.59 -14.10 3.81 -34.44 -0.13 -14.23 16 7 H 0.07 1.82 4.31 -52.48 -0.23 1.60 16 8 C 0.02 0.53 5.10 -17.82 -0.09 0.44 16 9 N -0.92 -24.93 12.26 55.43 0.68 -24.25 16 10 Si 1.05 23.62 29.91 -169.99 -5.08 18.54 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.06 1.34 5.46 -3.82 -0.02 1.32 16 15 N -0.84 -17.03 8.63 -10.37 -0.09 -17.12 16 16 C -0.07 -1.59 4.33 -26.65 -0.12 -1.70 16 17 C 0.09 1.88 2.93 -67.73 -0.20 1.68 16 18 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 19 C -0.20 -4.09 6.72 37.16 0.25 -3.84 16 20 N -0.53 -10.34 4.69 -226.95 -1.07 -11.41 16 21 C 0.02 0.37 8.68 60.06 0.52 0.89 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.73 6.32 -51.92 -0.33 0.40 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.81 5.36 -51.93 -0.28 1.53 16 27 H 0.28 7.48 3.46 -40.82 -0.14 7.33 16 28 H 0.04 1.05 5.14 -51.93 -0.27 0.79 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.34 7.33 8.25 -39.29 -0.32 7.01 16 31 H 0.31 5.57 9.08 -39.29 -0.36 5.22 16 32 H 0.06 1.39 7.56 -51.93 -0.39 0.99 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.13 2.89 3.03 -51.93 -0.16 2.73 16 35 H 0.05 1.01 7.27 -51.93 -0.38 0.63 16 36 H 0.01 0.26 7.02 -51.93 -0.36 -0.10 16 37 H 0.02 0.36 6.84 -51.93 -0.36 0.00 16 38 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 LS Contribution 271.24 15.07 4.09 4.09 Total: -1.00 -25.60 271.24 -7.16 -32.76 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -5.93 Total: 14.47 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 0.25 Total: -17.08 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.48 Total: -52.77 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.08 Total: 18.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.60 -7.16 -32.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260937315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.177 kcal (2) G-P(sol) polarization free energy of solvation -25.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds