Wall clock time and date at job start Mon Mar 30 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46865 * 2 1 4 4 C 1.53044 * 109.46074 * 119.97848 * 2 1 3 5 5 C 1.53111 * 109.28072 * 179.18248 * 4 2 1 6 6 C 1.50703 * 109.52225 * 62.25234 * 5 4 2 7 7 H 1.08006 * 120.00050 * 236.73956 * 6 5 4 8 8 C 1.37876 * 120.00370 * 56.73842 * 6 5 4 9 9 N 1.31518 * 119.99424 * 7.68491 * 8 6 5 10 10 Si 1.86797 * 120.00310 * 187.96283 * 8 6 5 11 11 H 1.48501 * 109.47369 * 179.72543 * 10 8 6 12 12 H 1.48498 * 109.46792 * 299.72360 * 10 8 6 13 13 H 1.48504 * 109.46992 * 59.72083 * 10 8 6 14 14 C 1.53000 * 109.52496 * 182.37775 * 5 4 2 15 15 N 1.46900 * 109.47097 * 173.97969 * 14 5 4 16 16 C 1.53124 * 109.16351 * 302.34852 * 5 4 2 17 17 C 1.53033 * 109.27737 * 57.64830 * 16 5 4 18 18 H 1.09002 * 109.46218 * 180.80595 * 17 16 5 19 19 C 1.53001 * 109.46113 * 60.84363 * 17 16 5 20 20 N 1.46843 * 109.53012 * 300.82662 * 17 16 5 21 21 C 1.46895 * 111.00415 * 185.84002 * 20 17 16 22 22 H 1.08996 * 109.47284 * 300.02876 * 1 2 3 23 23 H 1.09008 * 109.46989 * 60.02166 * 1 2 3 24 24 H 1.08997 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.50312 * 59.23989 * 4 2 1 26 26 H 1.09004 * 109.50222 * 299.12469 * 4 2 1 27 27 H 0.96996 * 120.00226 * 356.31061 * 9 8 6 28 28 H 1.09000 * 109.46966 * 293.97748 * 14 5 4 29 29 H 1.09000 * 109.46986 * 53.97829 * 14 5 4 30 30 H 1.00896 * 111.00020 * 61.24114 * 15 14 5 31 31 H 1.00910 * 110.99773 * 185.19126 * 15 14 5 32 32 H 1.09001 * 109.50321 * 177.59676 * 16 5 4 33 33 H 1.08999 * 109.49802 * 297.71339 * 16 5 4 34 34 H 1.09002 * 109.46901 * 292.38552 * 19 17 16 35 35 H 1.09003 * 109.47359 * 52.38222 * 19 17 16 36 36 H 1.08996 * 109.47257 * 172.38514 * 19 17 16 37 37 H 1.08996 * 109.47095 * 295.78929 * 21 20 17 38 38 H 1.09003 * 109.47201 * 55.78901 * 21 20 17 39 39 H 1.08995 * 109.47168 * 175.79030 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 3.5708 -0.7365 1.2355 6 6 4.0892 0.6779 1.2793 7 1 4.7495 1.0353 0.5029 8 6 3.7205 1.5157 2.3104 9 7 3.0424 1.0414 3.3325 10 14 4.1774 3.3260 2.2518 11 1 3.6627 4.0061 3.4674 12 1 5.6551 3.4620 2.1967 13 1 3.5776 3.9490 1.0445 14 6 4.0859 -1.5077 2.4525 15 7 5.5456 -1.6461 2.3625 16 6 4.0545 -1.4193 -0.0469 17 6 3.4862 -0.6781 -1.2591 18 1 3.8171 -1.1703 -2.1737 19 6 3.9832 0.7689 -1.2509 20 7 2.0191 -0.6918 -1.1994 21 6 1.4371 -0.1105 -2.4165 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5135 -0.8903 24 1 -0.3634 -1.0276 0.0005 25 1 1.6656 -1.7447 1.2576 26 1 1.6895 -0.1982 2.1400 27 1 2.7553 0.1148 3.3362 28 1 3.8277 -0.9654 3.3621 29 1 3.6279 -2.4965 2.4765 30 1 5.9949 -0.7428 2.3591 31 1 5.9007 -2.2239 3.1098 32 1 5.1436 -1.3954 -0.0833 33 1 3.7120 -2.4540 -0.0596 34 1 3.5426 1.2996 -0.4068 35 1 5.0694 0.7796 -1.1598 36 1 3.6918 1.2585 -2.1800 37 1 1.7120 0.9421 -2.4837 38 1 1.8161 -0.6414 -3.2898 39 1 0.3516 -0.2009 -2.3791 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260937315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:57 Heat of formation + Delta-G solvation = 11.349477 kcal Electronic energy + Delta-G solvation = -17946.336889 eV Core-core repulsion = 15502.978495 eV Total energy + Delta-G solvation = -2443.358394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17488 -37.24537 -34.19693 -33.69748 -32.54845 -29.46703 -27.73170 -27.15707 -26.17806 -24.58787 -22.51999 -20.96669 -19.68960 -18.42028 -16.92758 -16.46749 -16.05781 -15.78935 -15.63127 -14.97101 -14.73772 -14.41415 -14.23364 -13.42362 -13.17952 -13.12364 -13.04830 -12.73504 -12.61591 -12.50723 -12.39267 -12.29415 -12.04402 -11.95329 -11.56622 -11.32527 -10.81071 -10.63760 -10.27356 -9.83300 -9.34300 -8.96784 -8.11630 -5.92791 1.57143 1.60158 1.77632 2.64998 3.21547 3.39247 3.96905 4.17396 4.20769 4.31472 4.44021 4.55190 4.63890 4.68056 4.72036 4.78840 4.84905 4.88377 5.00027 5.03866 5.09056 5.12710 5.19603 5.23051 5.28359 5.40138 5.48900 5.56381 5.66119 5.79539 5.90196 6.42057 6.43710 6.49134 6.53109 6.59065 6.84542 6.98220 7.71802 9.06233 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.014226 C = 0.012067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.644302 B = 1967.759982 C = 2319.826168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.096 3.904 3 H 0.031 0.969 4 C -0.099 4.099 5 C 0.055 3.945 6 C -0.567 4.567 7 H 0.072 0.928 8 C -0.019 4.019 9 N -0.950 5.950 10 Si 1.084 2.916 11 H -0.298 1.298 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.066 3.934 15 N -0.834 5.834 16 C -0.067 4.067 17 C 0.094 3.906 18 H 0.070 0.930 19 C -0.193 4.193 20 N -0.537 5.537 21 C 0.021 3.979 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.274 0.726 28 H 0.018 0.982 29 H 0.031 0.969 30 H 0.340 0.660 31 H 0.329 0.671 32 H 0.055 0.945 33 H 0.030 0.970 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.031 0.969 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -1.645 -7.392 7.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.012 4.012 3 H 0.049 0.951 4 C -0.138 4.138 5 C 0.054 3.946 6 C -0.605 4.605 7 H 0.090 0.910 8 C -0.218 4.218 9 N -0.593 5.593 10 Si 0.911 3.089 11 H -0.225 1.225 12 H -0.203 1.203 13 H -0.206 1.206 14 C -0.066 4.066 15 N -0.362 5.362 16 C -0.105 4.105 17 C -0.015 4.015 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.262 5.262 21 C -0.127 4.127 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.037 0.963 38 H 0.091 0.909 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.666 -1.076 -7.220 7.487 hybrid contribution 0.377 -0.120 0.452 0.601 sum -1.289 -1.196 -6.767 6.992 Atomic orbital electron populations 1.21877 0.94493 1.01917 1.01432 1.21346 0.94288 0.95566 0.89963 0.95131 1.21619 0.98350 0.97116 0.96720 1.18363 0.90884 0.94258 0.91102 1.22552 1.29949 0.96822 1.11160 0.90974 1.26334 0.95894 1.07147 0.92404 1.70925 1.38989 1.18964 1.30468 0.83333 0.76581 0.73403 0.75602 1.22490 1.20327 1.20567 1.21953 0.88708 0.96416 0.99537 1.58724 1.05129 1.20370 1.52006 1.21218 0.98939 0.96200 0.94153 1.21496 0.86952 0.95166 0.97843 0.91215 1.23250 1.00881 0.99077 1.01813 1.62242 1.07079 1.54524 1.02308 1.22442 1.00669 0.97160 0.92383 0.93326 0.91422 0.92154 0.95256 0.93371 0.91000 0.96403 0.95091 0.84778 0.86057 0.92586 0.95102 0.88044 0.93548 0.95049 0.96307 0.90906 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.77 71.98 0.63 -4.09 16 2 C 0.10 3.87 2.08 44.94 0.09 3.96 16 3 H 0.03 1.40 5.65 -2.39 -0.01 1.39 16 4 C -0.10 -4.44 3.84 30.65 0.12 -4.32 16 5 C 0.05 2.46 0.33 -52.85 -0.02 2.44 16 6 C -0.57 -27.22 3.81 25.60 0.10 -27.12 16 7 H 0.07 3.48 4.31 -2.91 -0.01 3.47 16 8 C -0.02 -0.96 5.10 84.65 0.43 -0.53 16 9 N -0.95 -52.64 12.26 21.45 0.26 -52.38 16 10 Si 1.08 47.78 29.91 68.60 2.05 49.83 16 11 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.07 2.94 5.46 86.30 0.47 3.41 16 15 N -0.83 -33.21 8.63 -186.72 -1.61 -34.82 16 16 C -0.07 -2.78 4.33 30.65 0.13 -2.65 16 17 C 0.09 3.53 2.93 44.94 0.13 3.66 16 18 H 0.07 2.40 8.09 -2.39 -0.02 2.39 16 19 C -0.19 -7.43 6.72 71.98 0.48 -6.95 16 20 N -0.54 -19.52 4.69 -871.94 -4.09 -23.61 16 21 C 0.02 0.63 8.68 127.69 1.11 1.74 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.07 1.97 6.32 -2.38 -0.02 1.95 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 2.41 5.36 -2.38 -0.01 2.40 16 27 H 0.27 15.10 3.46 -92.71 -0.32 14.78 16 28 H 0.02 0.90 5.14 -2.39 -0.01 0.89 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.34 14.29 8.25 -89.70 -0.74 13.55 16 31 H 0.33 11.39 9.08 -89.69 -0.81 10.57 16 32 H 0.06 2.38 7.56 -2.39 -0.02 2.36 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 4.51 3.03 -2.39 -0.01 4.50 16 35 H 0.05 1.79 7.27 -2.39 -0.02 1.77 16 36 H 0.03 1.08 7.02 -2.39 -0.02 1.06 16 37 H 0.02 0.56 6.84 -2.39 -0.02 0.55 16 38 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 39 H 0.08 2.04 6.21 -2.39 -0.01 2.03 16 Total: -1.00 -53.70 271.24 0.25 -53.45 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.05 Total: 37.98 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.68 Total: -30.45 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -5.44 Total: -110.81 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.05 Total: 49.83 kcal Total: -53.70 0.25 -53.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260937315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.800 kcal (2) G-P(sol) polarization free energy of solvation -53.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds