Wall clock time and date at job start Mon Mar 30 2020 03:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46523 * 2 1 4 4 C 1.53033 * 109.45288 * 119.97951 * 2 1 3 5 5 C 1.53125 * 109.27873 * 179.19169 * 4 2 1 6 6 C 1.50698 * 109.52218 * 62.24476 * 5 4 2 7 7 H 1.08007 * 119.99841 * 205.12232 * 6 5 4 8 8 C 1.37871 * 120.00229 * 25.12669 * 6 5 4 9 9 N 1.31517 * 119.99881 * 29.66950 * 8 6 5 10 10 Si 1.86803 * 119.99995 * 209.67127 * 8 6 5 11 11 H 1.48501 * 109.47189 * 59.99635 * 10 8 6 12 12 H 1.48500 * 109.47172 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47107 * 299.99767 * 10 8 6 14 14 N 1.46901 * 109.52234 * 182.43794 * 5 4 2 15 15 C 1.46899 * 110.99800 * 173.51575 * 14 5 4 16 16 C 1.46902 * 110.99720 * 297.46801 * 14 5 4 17 17 C 1.53120 * 109.15717 * 302.34150 * 5 4 2 18 18 C 1.53033 * 109.27827 * 57.65366 * 17 5 4 19 19 N 1.46844 * 109.52588 * 300.81807 * 18 17 5 20 20 C 1.46899 * 111.00021 * 185.83665 * 19 18 17 21 21 H 1.09002 * 109.46999 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46989 * 299.97692 * 1 2 3 23 23 H 1.09003 * 109.46774 * 59.97438 * 1 2 3 24 24 H 1.09003 * 109.49919 * 299.12850 * 4 2 1 25 25 H 1.08994 * 109.51004 * 59.20866 * 4 2 1 26 26 H 0.97007 * 119.99700 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.47326 * 56.45487 * 15 14 5 28 28 H 1.08997 * 109.46708 * 176.45515 * 15 14 5 29 29 H 1.09004 * 109.46833 * 296.45278 * 15 14 5 30 30 H 1.08998 * 109.47094 * 60.00461 * 16 14 5 31 31 H 1.08998 * 109.46632 * 180.02562 * 16 14 5 32 32 H 1.09000 * 109.47038 * 300.00069 * 16 14 5 33 33 H 1.08998 * 109.50445 * 297.71477 * 17 5 4 34 34 H 1.08992 * 109.50160 * 177.59673 * 17 5 4 35 35 H 1.09000 * 109.46553 * 60.83862 * 18 17 5 36 36 H 1.09002 * 109.46511 * 180.80415 * 18 17 5 37 37 H 1.09003 * 109.47190 * 63.96107 * 20 19 18 38 38 H 1.09007 * 109.47220 * 183.95549 * 20 19 18 39 39 H 1.08996 * 109.47614 * 303.95527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 1.2499 5 6 3.5708 -0.7364 1.2357 6 6 4.0890 0.6780 1.2795 7 1 5.0664 0.9076 0.8813 8 6 3.3156 1.6789 1.8279 9 7 2.4625 1.3990 2.7889 10 14 3.4794 3.4328 1.2060 11 1 3.1504 3.4774 -0.2415 12 1 2.5454 4.3124 1.9538 13 1 4.8729 3.9028 1.4116 14 7 4.0651 -1.4781 2.4034 15 6 5.5232 -1.6456 2.3420 16 6 3.6629 -0.8202 3.6538 17 6 4.0546 -1.4192 -0.0466 18 6 3.4865 -0.6780 -1.2589 19 7 2.0193 -0.6919 -1.1994 20 6 1.4375 -0.1105 -2.4166 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5143 -0.8898 24 1 1.6892 -0.1982 2.1399 25 1 1.6650 -1.7445 1.2579 26 1 1.9181 2.1032 3.1745 27 1 5.9981 -0.6680 2.2588 28 1 5.8703 -2.1421 3.2481 29 1 5.7831 -2.2509 1.4736 30 1 2.5752 -0.7718 3.7053 31 1 4.0423 -1.3897 4.5022 32 1 4.0733 0.1892 3.6815 33 1 3.7121 -2.4539 -0.0594 34 1 5.1436 -1.3953 -0.0829 35 1 3.8405 0.3529 -1.2530 36 1 3.8174 -1.1702 -2.1734 37 1 1.6997 -0.7283 -3.2755 38 1 0.3529 -0.0687 -2.3167 39 1 1.8281 0.8968 -2.5607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261146183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:51 Heat of formation + Delta-G solvation = 28.958660 kcal Electronic energy + Delta-G solvation = -17946.196104 eV Core-core repulsion = 15503.601301 eV Total energy + Delta-G solvation = -2442.594803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90458 -35.91832 -32.63226 -31.41896 -30.66200 -26.89671 -26.24089 -25.12028 -24.65606 -22.40288 -21.21037 -19.34927 -18.33282 -15.85559 -15.12597 -14.69648 -14.60829 -13.88859 -13.61775 -13.51488 -13.08469 -12.64031 -12.48721 -12.11623 -11.55848 -11.32903 -11.28661 -11.10235 -10.83664 -10.78765 -10.64383 -10.51802 -10.41644 -10.18914 -9.93674 -9.63482 -9.44258 -9.03863 -8.78321 -8.12016 -7.38636 -6.68329 -6.14778 -4.10823 3.20304 3.28458 3.33791 4.32904 4.80364 4.95048 5.58813 5.74496 5.87534 5.95791 6.02624 6.16166 6.26807 6.32668 6.36034 6.42235 6.51234 6.61939 6.67597 6.77549 6.81856 6.89789 6.94992 7.00436 7.09399 7.14532 7.34246 7.43192 7.49793 7.66513 7.89597 7.97258 8.05106 8.21839 8.40956 8.59336 8.81935 8.93417 9.48109 10.77490 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.016643 C = 0.012323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.849367 B = 1681.955229 C = 2271.537702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.094 3.906 3 H 0.049 0.951 4 C -0.103 4.103 5 C 0.226 3.774 6 C -0.547 4.547 7 H 0.052 0.948 8 C 0.090 3.910 9 N -0.846 5.846 10 Si 0.859 3.141 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.279 1.279 14 N -0.548 5.548 15 C 0.035 3.965 16 C 0.057 3.943 17 C -0.094 4.094 18 C 0.072 3.928 19 N -0.540 5.540 20 C 0.021 3.979 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.041 0.959 24 H 0.123 0.877 25 H 0.028 0.972 26 H 0.261 0.739 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.008 0.992 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -2.071 -4.052 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 H 0.067 0.933 4 C -0.141 4.141 5 C 0.139 3.861 6 C -0.586 4.586 7 H 0.070 0.930 8 C -0.115 4.115 9 N -0.482 5.482 10 Si 0.686 3.314 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.204 1.204 14 N -0.272 5.272 15 C -0.114 4.114 16 C -0.091 4.091 17 C -0.132 4.132 18 C -0.057 4.057 19 N -0.265 5.265 20 C -0.128 4.128 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.140 0.860 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.800 -2.956 -3.875 5.196 hybrid contribution 0.780 2.783 -0.551 2.942 sum -1.019 -0.174 -4.426 4.545 Atomic orbital electron populations 1.21927 0.96720 1.01139 1.00325 1.21563 0.92693 0.97012 0.90164 0.93320 1.21884 0.96032 0.97757 0.98416 1.18734 0.92281 0.89589 0.85478 1.21359 1.03026 0.93344 1.40861 0.93006 1.24752 0.95582 0.98027 0.93116 1.70128 1.25205 1.32822 1.20093 0.87194 0.78140 0.86220 0.79879 1.20381 1.21226 1.20410 1.62589 1.09243 1.51151 1.04204 1.22085 0.91264 0.99122 0.98924 1.22156 1.01345 0.97099 0.88518 1.21565 0.98138 0.98143 0.95383 1.21894 0.86969 0.99425 0.97378 1.62091 1.07628 1.54848 1.01949 1.22389 1.00091 0.96902 0.93425 0.92838 0.92635 0.93978 0.85974 0.95316 0.92867 0.95680 0.94545 0.93547 0.91377 0.97313 0.92911 0.93293 0.93426 0.94292 0.93334 0.92646 0.91654 0.96651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.79 37.16 0.33 -2.35 16 2 C 0.09 2.02 2.15 -67.72 -0.15 1.88 16 3 H 0.05 1.19 5.78 -51.93 -0.30 0.89 16 4 C -0.10 -2.40 3.44 -26.65 -0.09 -2.49 16 5 C 0.23 5.33 0.42 -132.63 -0.06 5.27 16 6 C -0.55 -13.86 4.41 -34.44 -0.15 -14.01 16 7 H 0.05 1.38 7.86 -52.48 -0.41 0.97 16 8 C 0.09 2.26 2.99 -17.82 -0.05 2.20 16 9 N -0.85 -21.17 7.69 55.43 0.43 -20.74 16 10 Si 0.86 20.08 29.20 -169.99 -4.96 15.12 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 N -0.55 -12.73 4.84 -236.61 -1.14 -13.88 16 15 C 0.04 0.74 8.78 60.06 0.53 1.27 16 16 C 0.06 1.34 7.83 60.07 0.47 1.81 16 17 C -0.09 -2.03 4.34 -26.65 -0.12 -2.14 16 18 C 0.07 1.47 5.25 -3.84 -0.02 1.45 16 19 N -0.54 -10.89 4.75 -234.93 -1.12 -12.00 16 20 C 0.02 0.35 9.30 60.06 0.56 0.91 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.04 0.70 6.15 -51.93 -0.32 0.38 16 24 H 0.12 3.07 3.93 -51.93 -0.20 2.86 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 27 H 0.02 0.56 7.12 -51.93 -0.37 0.19 16 28 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 29 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 30 H 0.07 1.66 5.93 -51.93 -0.31 1.35 16 31 H 0.01 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.05 1.36 5.70 -51.93 -0.30 1.06 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.00 6.57 -51.93 -0.34 0.66 16 35 H 0.04 0.87 7.31 -51.93 -0.38 0.49 16 36 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.03 5.75 -51.92 -0.30 0.73 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -25.42 275.50 -7.89 -33.31 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.50 Total: 0.26 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 1.25 Total: -6.22 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -1.83 Total: -46.62 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.96 Total: 15.12 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -25.42 -7.89 -33.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.267 kcal (2) G-P(sol) polarization free energy of solvation -25.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds