Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46523 * 2 1 4 4 C 1.53033 * 109.45288 * 119.97951 * 2 1 3 5 5 C 1.53125 * 109.27873 * 179.19169 * 4 2 1 6 6 C 1.50698 * 109.52218 * 62.24476 * 5 4 2 7 7 H 1.08007 * 119.99841 * 205.12232 * 6 5 4 8 8 C 1.37871 * 120.00229 * 25.12669 * 6 5 4 9 9 N 1.31517 * 119.99881 * 29.66950 * 8 6 5 10 10 Si 1.86803 * 119.99995 * 209.67127 * 8 6 5 11 11 H 1.48501 * 109.47189 * 59.99635 * 10 8 6 12 12 H 1.48500 * 109.47172 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47107 * 299.99767 * 10 8 6 14 14 N 1.46901 * 109.52234 * 182.43794 * 5 4 2 15 15 C 1.46899 * 110.99800 * 173.51575 * 14 5 4 16 16 C 1.46902 * 110.99720 * 297.46801 * 14 5 4 17 17 C 1.53120 * 109.15717 * 302.34150 * 5 4 2 18 18 C 1.53033 * 109.27827 * 57.65366 * 17 5 4 19 19 N 1.46844 * 109.52588 * 300.81807 * 18 17 5 20 20 C 1.46899 * 111.00021 * 185.83665 * 19 18 17 21 21 H 1.09002 * 109.46999 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46989 * 299.97692 * 1 2 3 23 23 H 1.09003 * 109.46774 * 59.97438 * 1 2 3 24 24 H 1.09003 * 109.49919 * 299.12850 * 4 2 1 25 25 H 1.08994 * 109.51004 * 59.20866 * 4 2 1 26 26 H 0.97007 * 119.99700 * 180.02562 * 9 8 6 27 27 H 1.08994 * 109.47326 * 56.45487 * 15 14 5 28 28 H 1.08997 * 109.46708 * 176.45515 * 15 14 5 29 29 H 1.09004 * 109.46833 * 296.45278 * 15 14 5 30 30 H 1.08998 * 109.47094 * 60.00461 * 16 14 5 31 31 H 1.08998 * 109.46632 * 180.02562 * 16 14 5 32 32 H 1.09000 * 109.47038 * 300.00069 * 16 14 5 33 33 H 1.08998 * 109.50445 * 297.71477 * 17 5 4 34 34 H 1.08992 * 109.50160 * 177.59673 * 17 5 4 35 35 H 1.09000 * 109.46553 * 60.83862 * 18 17 5 36 36 H 1.09002 * 109.46511 * 180.80415 * 18 17 5 37 37 H 1.09003 * 109.47190 * 63.96107 * 20 19 18 38 38 H 1.09007 * 109.47220 * 183.95549 * 20 19 18 39 39 H 1.08996 * 109.47614 * 303.95527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 1.2499 5 6 3.5708 -0.7364 1.2357 6 6 4.0890 0.6780 1.2795 7 1 5.0664 0.9076 0.8813 8 6 3.3156 1.6789 1.8279 9 7 2.4625 1.3990 2.7889 10 14 3.4794 3.4328 1.2060 11 1 3.1504 3.4774 -0.2415 12 1 2.5454 4.3124 1.9538 13 1 4.8729 3.9028 1.4116 14 7 4.0651 -1.4781 2.4034 15 6 5.5232 -1.6456 2.3420 16 6 3.6629 -0.8202 3.6538 17 6 4.0546 -1.4192 -0.0466 18 6 3.4865 -0.6780 -1.2589 19 7 2.0193 -0.6919 -1.1994 20 6 1.4375 -0.1105 -2.4166 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5135 0.8902 23 1 -0.3633 0.5143 -0.8898 24 1 1.6892 -0.1982 2.1399 25 1 1.6650 -1.7445 1.2579 26 1 1.9181 2.1032 3.1745 27 1 5.9981 -0.6680 2.2588 28 1 5.8703 -2.1421 3.2481 29 1 5.7831 -2.2509 1.4736 30 1 2.5752 -0.7718 3.7053 31 1 4.0423 -1.3897 4.5022 32 1 4.0733 0.1892 3.6815 33 1 3.7121 -2.4539 -0.0594 34 1 5.1436 -1.3953 -0.0829 35 1 3.8405 0.3529 -1.2530 36 1 3.8174 -1.1702 -2.1734 37 1 1.6997 -0.7283 -3.2755 38 1 0.3529 -0.0687 -2.3167 39 1 1.8281 0.8968 -2.5607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = 12.220269 kcal Electronic energy + Delta-G solvation = -17946.921935 eV Core-core repulsion = 15503.601301 eV Total energy + Delta-G solvation = -2443.320634 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63925 -37.62502 -34.51783 -33.09846 -32.37026 -28.61427 -28.00407 -26.80501 -26.41657 -24.12309 -22.91834 -21.06868 -20.16893 -17.74815 -16.88021 -16.53396 -16.23479 -15.59232 -15.34417 -15.26584 -14.78163 -14.34807 -14.21680 -13.74228 -13.33850 -13.08700 -12.89221 -12.79783 -12.56295 -12.53431 -12.35753 -12.24846 -12.11111 -11.98624 -11.71198 -11.44273 -11.23990 -10.84853 -10.57173 -10.04015 -9.02009 -8.57237 -8.08666 -6.07953 1.29726 1.37565 1.41712 2.39501 2.99711 3.24769 3.81703 4.27921 4.30841 4.36934 4.55469 4.65524 4.70314 4.73618 4.79157 4.86402 4.93627 4.94438 4.99720 5.09158 5.10736 5.22616 5.26833 5.30587 5.32825 5.41480 5.50208 5.60118 5.68195 5.73177 5.95407 6.15755 6.38468 6.48447 6.54889 6.67822 6.98238 7.01971 7.51153 8.81638 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.016643 C = 0.012323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.849367 B = 1681.955229 C = 2271.537702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 H 0.018 0.982 4 C -0.096 4.096 5 C 0.220 3.780 6 C -0.554 4.554 7 H 0.030 0.970 8 C 0.068 3.932 9 N -0.851 5.851 10 Si 0.897 3.103 11 H -0.283 1.283 12 H -0.282 1.282 13 H -0.285 1.285 14 N -0.555 5.555 15 C 0.040 3.960 16 C 0.071 3.929 17 C -0.089 4.089 18 C 0.075 3.925 19 N -0.544 5.544 20 C 0.020 3.980 21 H 0.061 0.939 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.019 0.981 26 H 0.261 0.739 27 H 0.005 0.995 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -2.723 -5.056 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.012 4.012 3 H 0.036 0.964 4 C -0.134 4.134 5 C 0.133 3.867 6 C -0.592 4.592 7 H 0.049 0.951 8 C -0.136 4.136 9 N -0.487 5.487 10 Si 0.724 3.276 11 H -0.209 1.209 12 H -0.207 1.207 13 H -0.211 1.211 14 N -0.279 5.279 15 C -0.109 4.109 16 C -0.078 4.078 17 C -0.128 4.128 18 C -0.053 4.053 19 N -0.269 5.269 20 C -0.128 4.128 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -2.275 -3.608 -4.881 6.482 hybrid contribution 0.954 2.968 -0.231 3.126 sum -1.320 -0.640 -5.113 5.319 Atomic orbital electron populations 1.21850 0.94473 1.01926 1.01141 1.21433 0.94507 0.95008 0.90297 0.96379 1.21745 0.95942 0.96948 0.98779 1.18814 0.92491 0.88948 0.86451 1.21320 1.02328 0.94647 1.40952 0.95132 1.25052 0.95732 0.99656 0.93181 1.70198 1.25267 1.33154 1.20047 0.86611 0.77616 0.84241 0.79132 1.20930 1.20740 1.21061 1.62615 1.10595 1.50708 1.03975 1.22090 0.89761 0.98460 1.00580 1.21947 1.00339 0.95970 0.89502 1.21504 0.98272 0.97989 0.95025 1.21857 0.87379 0.98119 0.97982 1.62108 1.07343 1.54817 1.02606 1.22494 1.00803 0.96812 0.92687 0.91986 0.93147 0.91903 0.87823 0.96192 0.92877 0.97629 0.92603 0.92176 0.92712 0.95464 0.95543 0.93214 0.93292 0.96651 0.90569 0.90225 0.90153 0.97375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 8.79 71.98 0.63 -4.21 16 2 C 0.10 4.06 2.15 44.94 0.10 4.16 16 3 H 0.02 0.88 5.78 -2.39 -0.01 0.87 16 4 C -0.10 -4.45 3.44 30.65 0.11 -4.35 16 5 C 0.22 10.32 0.42 2.86 0.00 10.32 16 6 C -0.55 -28.34 4.41 25.60 0.11 -28.22 16 7 H 0.03 1.66 7.86 -2.91 -0.02 1.64 16 8 C 0.07 3.44 2.99 84.65 0.25 3.70 16 9 N -0.85 -42.89 7.69 21.45 0.16 -42.72 16 10 Si 0.90 41.48 29.20 68.60 2.00 43.48 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 14 N -0.56 -25.46 4.84 -902.50 -4.36 -29.83 16 15 C 0.04 1.64 8.78 127.69 1.12 2.76 16 16 C 0.07 3.31 7.83 127.69 1.00 4.31 16 17 C -0.09 -3.77 4.34 30.65 0.13 -3.64 16 18 C 0.08 2.96 5.25 86.32 0.45 3.41 16 19 N -0.54 -20.85 4.75 -897.17 -4.26 -25.11 16 20 C 0.02 0.62 9.30 127.69 1.19 1.81 16 21 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.06 1.94 6.15 -2.39 -0.01 1.93 16 24 H 0.10 5.24 3.93 -2.39 -0.01 5.23 16 25 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.26 12.77 8.31 -92.70 -0.77 12.00 16 27 H 0.01 0.23 7.12 -2.39 -0.02 0.22 16 28 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 29 H 0.06 2.27 6.49 -2.38 -0.02 2.25 16 30 H 0.05 2.67 5.93 -2.39 -0.01 2.66 16 31 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.03 1.36 5.70 -2.39 -0.01 1.35 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.01 6.57 -2.39 -0.02 1.99 16 35 H 0.02 0.67 7.31 -2.39 -0.02 0.66 16 36 H 0.08 2.56 8.12 -2.39 -0.02 2.55 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.25 5.75 -2.38 -0.01 2.24 16 39 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -53.20 275.50 -0.35 -53.55 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 1.01 Total: 10.57 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 5.10 Total: -9.95 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -8.46 Total: -97.66 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.00 Total: 43.48 kcal Total: -53.20 -0.35 -53.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.774 kcal (2) G-P(sol) polarization free energy of solvation -53.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds