Wall clock time and date at job start Mon Mar 30 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47188 * 119.99970 * 2 1 3 5 5 H 1.08002 * 120.00092 * 119.99685 * 4 2 1 6 6 C 1.37874 * 120.00261 * 300.00242 * 4 2 1 7 7 N 1.31514 * 120.00530 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99842 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47148 * 90.00357 * 8 6 4 10 10 H 1.48499 * 109.46924 * 210.00452 * 8 6 4 11 11 H 1.48505 * 109.46798 * 330.00153 * 8 6 4 12 12 N 1.46896 * 109.47044 * 240.00071 * 2 1 3 13 13 C 1.46897 * 111.00439 * 188.18553 * 12 2 1 14 14 C 1.46896 * 111.00476 * 64.22762 * 12 2 1 15 15 H 1.09008 * 109.49921 * 324.95002 * 14 12 2 16 16 C 1.53118 * 109.50762 * 204.86867 * 14 12 2 17 17 C 1.53123 * 109.15984 * 182.36620 * 16 14 12 18 18 C 1.53033 * 109.28011 * 57.65368 * 17 16 14 19 19 N 1.46850 * 109.52303 * 300.82012 * 18 17 16 20 20 C 1.46841 * 111.19766 * 61.74113 * 19 18 17 21 21 H 1.09005 * 109.45166 * 58.26751 * 20 19 18 22 22 C 1.53001 * 109.46440 * 178.24192 * 20 19 18 23 23 H 1.09001 * 109.47346 * 300.36502 * 1 2 3 24 24 H 1.09002 * 109.47590 * 60.36702 * 1 2 3 25 25 H 1.09005 * 109.47341 * 180.36837 * 1 2 3 26 26 H 0.96993 * 120.00319 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46718 * 303.68814 * 13 12 2 28 28 H 1.08997 * 109.47239 * 63.67593 * 13 12 2 29 29 H 1.08993 * 109.47914 * 183.68294 * 13 12 2 30 30 H 1.09001 * 109.52394 * 62.45998 * 16 14 12 31 31 H 1.08997 * 109.52431 * 302.26575 * 16 14 12 32 32 H 1.08996 * 109.50393 * 177.60052 * 17 16 14 33 33 H 1.09007 * 109.50123 * 297.70969 * 17 16 14 34 34 H 1.08995 * 109.46568 * 60.83773 * 18 17 16 35 35 H 1.09007 * 109.46216 * 180.80583 * 18 17 16 36 36 H 1.00904 * 110.99855 * 185.83755 * 19 18 17 37 37 H 1.08999 * 109.47386 * 192.99386 * 22 20 19 38 38 H 1.09009 * 109.47027 * 312.99435 * 22 20 19 39 39 H 1.09000 * 109.47130 * 72.99103 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8745 2.6994 10 1 0.9772 1.9953 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0196 -0.6925 -1.1994 13 6 3.4749 -0.8835 -1.1399 14 6 1.6330 0.0295 -2.4189 15 1 0.6508 0.4810 -2.2785 16 6 1.5829 -0.9472 -3.5971 17 6 1.2372 -0.1766 -4.8743 18 6 2.2768 0.9240 -5.0975 19 7 2.2854 1.8322 -3.9437 20 6 2.6611 1.1241 -2.7133 21 1 3.6454 0.6732 -2.8402 22 6 2.7001 2.1138 -1.5472 23 1 -0.3634 0.5195 0.8867 24 1 -0.3634 0.5081 -0.8932 25 1 -0.3634 -1.0277 0.0066 26 1 1.9032 -0.5280 4.4375 27 1 3.9629 0.0819 -1.0058 28 1 3.7218 -1.5349 -0.3015 29 1 3.8199 -1.3393 -2.0679 30 1 0.8210 -1.7041 -3.4108 31 1 2.5543 -1.4278 -3.7134 32 1 1.2419 -0.8594 -5.7239 33 1 0.2488 0.2716 -4.7726 34 1 3.2629 0.4741 -5.2130 35 1 2.0255 1.4837 -5.9985 36 1 2.8945 2.6198 -4.1080 37 1 3.1950 1.6503 -0.6937 38 1 3.2507 3.0059 -1.8460 39 1 1.6826 2.3903 -1.2711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307013413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:35 Heat of formation + Delta-G solvation = 22.228591 kcal Electronic energy + Delta-G solvation = -17333.204629 eV Core-core repulsion = 14890.317989 eV Total energy + Delta-G solvation = -2442.886641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60371 -36.12137 -32.73132 -32.52302 -30.60248 -29.39824 -27.15317 -25.14184 -24.27692 -22.64314 -21.35708 -19.73508 -18.77296 -16.85924 -16.05025 -15.33921 -14.89668 -14.39846 -14.19894 -13.85290 -13.26096 -13.21563 -12.75755 -12.45301 -12.14619 -12.11750 -11.72450 -11.59020 -11.33988 -10.94696 -10.76753 -10.76490 -10.58835 -10.35258 -10.14632 -9.96432 -9.83124 -9.42754 -8.91096 -8.53581 -8.30344 -7.15266 -6.04302 -4.02072 3.28875 3.38322 3.40345 4.25976 4.41956 4.78864 5.08285 5.11212 5.22192 5.29422 5.32855 5.51504 5.61874 5.77613 5.83988 5.92710 6.06946 6.09713 6.11545 6.20029 6.27523 6.31242 6.43474 6.51343 6.54479 6.62061 6.65472 6.72859 6.91591 6.99887 7.17441 7.37566 7.48876 7.64517 8.03574 8.17107 8.70370 9.02198 9.58191 11.08423 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.008753 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.897107 B = 3198.034093 C = 3333.592185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.506 4.506 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.901 5.901 8 Si 0.884 3.116 9 H -0.279 1.279 10 H -0.299 1.299 11 H -0.268 1.268 12 N -0.518 5.518 13 C 0.033 3.967 14 C 0.084 3.916 15 H 0.085 0.915 16 C -0.108 4.108 17 C -0.117 4.117 18 C 0.060 3.940 19 N -0.685 5.685 20 C 0.059 3.941 21 H 0.040 0.960 22 C -0.155 4.155 23 H 0.039 0.961 24 H 0.029 0.971 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.335 0.665 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 4.375 -14.777 15.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.055 3.945 3 H 0.041 0.959 4 C -0.544 4.544 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.227 1.227 11 H -0.193 1.193 12 N -0.241 5.241 13 C -0.115 4.115 14 C -0.025 4.025 15 H 0.103 0.897 16 C -0.146 4.146 17 C -0.155 4.155 18 C -0.069 4.069 19 N -0.318 5.318 20 C -0.052 4.052 21 H 0.058 0.942 22 C -0.212 4.212 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.040 0.960 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.501 3.828 -14.451 14.957 hybrid contribution 0.699 1.474 0.143 1.637 sum 0.197 5.302 -14.308 15.260 Atomic orbital electron populations 1.22198 0.98897 1.01144 0.98010 1.20114 0.91423 0.94405 0.88559 0.95889 1.21072 1.31723 1.13537 0.88090 0.90004 1.24918 0.95807 0.96602 0.95845 1.69879 1.45935 1.40337 0.97850 0.86909 0.80867 0.83937 0.76775 1.20636 1.22655 1.19276 1.62152 1.12282 1.48249 1.01421 1.22326 0.88479 1.00003 1.00714 1.21844 0.98452 0.91254 0.90985 0.89693 1.21574 1.01661 0.97984 0.93402 1.21589 0.99438 0.96699 0.97787 1.21881 0.97588 0.94377 0.93102 1.60353 1.58145 1.10681 1.02583 1.22268 0.98038 0.95242 0.89669 0.94202 1.22251 1.02676 0.98190 0.98086 0.94257 0.95176 0.92334 0.92711 0.95964 0.90305 0.94087 0.91278 0.92634 0.91939 0.91356 0.95720 0.91360 0.84711 0.90094 0.93622 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.62 37.16 0.32 -2.93 16 2 C 0.16 3.78 1.29 -68.87 -0.09 3.69 16 3 H 0.02 0.56 2.93 -51.93 -0.15 0.40 16 4 C -0.51 -13.99 8.54 -34.44 -0.29 -14.28 16 5 H 0.08 2.46 6.36 -52.49 -0.33 2.12 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 8 Si 0.88 22.03 24.37 -169.99 -4.14 17.88 16 9 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.52 -10.61 4.47 -228.21 -1.02 -11.63 16 13 C 0.03 0.64 7.66 60.06 0.46 1.10 16 14 C 0.08 1.47 1.82 -67.63 -0.12 1.34 16 15 H 0.09 1.59 5.71 -51.92 -0.30 1.30 16 16 C -0.11 -1.61 5.48 -26.61 -0.15 -1.76 16 17 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 18 C 0.06 0.71 6.55 -3.83 -0.03 0.68 16 19 N -0.69 -9.25 6.50 -106.76 -0.69 -9.94 16 20 C 0.06 0.92 1.99 -67.72 -0.13 0.79 16 21 H 0.04 0.64 6.39 -51.93 -0.33 0.31 16 22 C -0.15 -2.61 7.56 37.16 0.28 -2.33 16 23 H 0.04 0.91 3.28 -51.93 -0.17 0.74 16 24 H 0.03 0.59 6.14 -51.93 -0.32 0.28 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.02 0.42 5.02 -51.93 -0.26 0.16 16 28 H 0.08 1.70 6.17 -51.93 -0.32 1.38 16 29 H 0.04 0.70 6.79 -51.93 -0.35 0.34 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.83 7.06 -51.93 -0.37 0.46 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.34 3.95 8.71 -39.29 -0.34 3.60 16 37 H 0.08 1.54 4.64 -51.93 -0.24 1.30 16 38 H 0.04 0.66 8.03 -51.92 -0.42 0.24 16 39 H 0.06 1.16 7.47 -51.93 -0.39 0.77 16 LS Contribution 272.73 15.07 4.11 4.11 Total: -1.00 -29.22 272.73 -6.99 -36.21 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.01 Total: 3.46 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.01 Total: -13.41 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.94 Total: -48.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.22 -6.99 -36.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.441 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds