Wall clock time and date at job start Mon Mar 30 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47270 * 2 1 4 4 C 1.50696 * 109.47188 * 119.99970 * 2 1 3 5 5 H 1.08002 * 120.00092 * 119.99685 * 4 2 1 6 6 C 1.37874 * 120.00261 * 300.00242 * 4 2 1 7 7 N 1.31514 * 120.00530 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99842 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47148 * 90.00357 * 8 6 4 10 10 H 1.48499 * 109.46924 * 210.00452 * 8 6 4 11 11 H 1.48505 * 109.46798 * 330.00153 * 8 6 4 12 12 N 1.46896 * 109.47044 * 240.00071 * 2 1 3 13 13 C 1.46897 * 111.00439 * 188.18553 * 12 2 1 14 14 C 1.46896 * 111.00476 * 64.22762 * 12 2 1 15 15 H 1.09008 * 109.49921 * 324.95002 * 14 12 2 16 16 C 1.53118 * 109.50762 * 204.86867 * 14 12 2 17 17 C 1.53123 * 109.15984 * 182.36620 * 16 14 12 18 18 C 1.53033 * 109.28011 * 57.65368 * 17 16 14 19 19 N 1.46850 * 109.52303 * 300.82012 * 18 17 16 20 20 C 1.46841 * 111.19766 * 61.74113 * 19 18 17 21 21 H 1.09005 * 109.45166 * 58.26751 * 20 19 18 22 22 C 1.53001 * 109.46440 * 178.24192 * 20 19 18 23 23 H 1.09001 * 109.47346 * 300.36502 * 1 2 3 24 24 H 1.09002 * 109.47590 * 60.36702 * 1 2 3 25 25 H 1.09005 * 109.47341 * 180.36837 * 1 2 3 26 26 H 0.96993 * 120.00319 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46718 * 303.68814 * 13 12 2 28 28 H 1.08997 * 109.47239 * 63.67593 * 13 12 2 29 29 H 1.08993 * 109.47914 * 183.68294 * 13 12 2 30 30 H 1.09001 * 109.52394 * 62.45998 * 16 14 12 31 31 H 1.08997 * 109.52431 * 302.26575 * 16 14 12 32 32 H 1.08996 * 109.50393 * 177.60052 * 17 16 14 33 33 H 1.09007 * 109.50123 * 297.70969 * 17 16 14 34 34 H 1.08995 * 109.46568 * 60.83773 * 18 17 16 35 35 H 1.09007 * 109.46216 * 180.80583 * 18 17 16 36 36 H 1.00904 * 110.99855 * 185.83755 * 19 18 17 37 37 H 1.08999 * 109.47386 * 192.99386 * 22 20 19 38 38 H 1.09009 * 109.47027 * 312.99435 * 22 20 19 39 39 H 1.09000 * 109.47130 * 72.99103 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8745 2.6994 10 1 0.9772 1.9953 3.9070 11 1 0.8491 2.1773 1.4922 12 7 2.0196 -0.6925 -1.1994 13 6 3.4749 -0.8835 -1.1399 14 6 1.6330 0.0295 -2.4189 15 1 0.6508 0.4810 -2.2785 16 6 1.5829 -0.9472 -3.5971 17 6 1.2372 -0.1766 -4.8743 18 6 2.2768 0.9240 -5.0975 19 7 2.2854 1.8322 -3.9437 20 6 2.6611 1.1241 -2.7133 21 1 3.6454 0.6732 -2.8402 22 6 2.7001 2.1138 -1.5472 23 1 -0.3634 0.5195 0.8867 24 1 -0.3634 0.5081 -0.8932 25 1 -0.3634 -1.0277 0.0066 26 1 1.9032 -0.5280 4.4375 27 1 3.9629 0.0819 -1.0058 28 1 3.7218 -1.5349 -0.3015 29 1 3.8199 -1.3393 -2.0679 30 1 0.8210 -1.7041 -3.4108 31 1 2.5543 -1.4278 -3.7134 32 1 1.2419 -0.8594 -5.7239 33 1 0.2488 0.2716 -4.7726 34 1 3.2629 0.4741 -5.2130 35 1 2.0255 1.4837 -5.9985 36 1 2.8945 2.6198 -4.1080 37 1 3.1950 1.6503 -0.6937 38 1 3.2507 3.0059 -1.8460 39 1 1.6826 2.3903 -1.2711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307013413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:35 Heat of formation + Delta-G solvation = -0.273919 kcal Electronic energy + Delta-G solvation = -17334.180411 eV Core-core repulsion = 14890.317989 eV Total energy + Delta-G solvation = -2443.862423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96758 -37.55748 -34.70409 -33.67759 -32.38273 -30.84214 -28.51377 -26.95310 -25.94754 -23.94346 -22.56628 -21.37066 -20.11739 -18.86168 -17.28846 -17.10054 -16.41644 -15.78998 -15.66670 -15.12783 -14.72102 -14.69821 -14.56298 -13.90258 -13.80774 -13.45344 -13.20969 -12.96923 -12.84830 -12.64888 -12.47789 -12.33218 -11.99120 -11.83996 -11.68887 -11.40867 -11.33331 -11.17935 -10.81684 -10.70490 -9.38398 -8.76278 -8.25810 -6.27324 1.30426 1.34319 1.44451 2.32577 3.06521 3.13089 3.41355 3.83605 3.94310 4.16573 4.22056 4.30429 4.45880 4.48109 4.52427 4.65794 4.68657 4.71809 4.78225 4.84764 4.90336 4.93345 4.94555 5.02535 5.11681 5.17570 5.22669 5.31704 5.43032 5.48475 5.53615 5.69679 5.98904 6.17838 6.43646 6.54997 6.78307 6.81742 7.36985 8.90309 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.008753 C = 0.008397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.897107 B = 3198.034093 C = 3333.592185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.166 3.834 3 H 0.028 0.972 4 C -0.505 4.505 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.950 5.950 8 Si 0.943 3.057 9 H -0.270 1.270 10 H -0.300 1.300 11 H -0.248 1.248 12 N -0.531 5.531 13 C 0.041 3.959 14 C 0.083 3.917 15 H 0.074 0.926 16 C -0.105 4.105 17 C -0.112 4.112 18 C 0.059 3.941 19 N -0.688 5.688 20 C 0.067 3.933 21 H 0.039 0.961 22 C -0.152 4.152 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.025 0.975 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.029 0.971 35 H 0.093 0.907 36 H 0.348 0.652 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 6.022 -17.486 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.058 3.942 3 H 0.045 0.955 4 C -0.543 4.543 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.228 1.228 11 H -0.172 1.172 12 N -0.254 5.254 13 C -0.107 4.107 14 C -0.026 4.026 15 H 0.092 0.908 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.070 4.070 19 N -0.321 5.321 20 C -0.044 4.044 21 H 0.057 0.943 22 C -0.209 4.209 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.111 0.889 36 H 0.167 0.833 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.171 5.483 -17.202 18.092 hybrid contribution 0.970 0.884 0.917 1.601 sum -0.201 6.367 -16.285 17.487 Atomic orbital electron populations 1.22115 0.97886 1.00903 0.99000 1.19954 0.92115 0.94047 0.88057 0.95527 1.21352 1.30496 1.12291 0.90175 0.93875 1.25714 0.97373 0.99797 0.95477 1.70029 1.48069 1.42532 0.98476 0.85941 0.79283 0.80485 0.77215 1.19668 1.22780 1.17179 1.62087 1.12679 1.48904 1.01721 1.22212 0.88268 0.99594 1.00648 1.21900 0.98185 0.92276 0.90209 0.90829 1.21554 1.01504 0.97557 0.93720 1.21580 0.99383 0.97042 0.96981 1.21981 0.97637 0.94237 0.93153 1.60293 1.58449 1.11188 1.02202 1.22026 0.97247 0.94556 0.90550 0.94331 1.22150 1.01773 0.99317 0.97660 0.94929 0.92403 0.93246 0.92704 0.95702 0.93617 0.91467 0.92068 0.92626 0.89555 0.91688 0.95251 0.88894 0.83289 0.92807 0.91183 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 8.62 71.98 0.62 -5.56 16 2 C 0.17 7.71 1.29 44.17 0.06 7.76 16 3 H 0.03 1.26 2.93 -2.39 -0.01 1.26 16 4 C -0.50 -28.74 8.54 25.60 0.22 -28.52 16 5 H 0.04 2.73 6.36 -2.91 -0.02 2.72 16 6 C 0.01 0.77 5.45 84.65 0.46 1.23 16 7 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 8 Si 0.94 45.45 24.37 68.60 1.67 47.12 16 9 H -0.27 -12.57 6.87 99.48 0.68 -11.89 16 10 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 11 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 12 N -0.53 -21.54 4.47 -875.92 -3.92 -25.45 16 13 C 0.04 1.59 7.66 127.69 0.98 2.57 16 14 C 0.08 2.74 1.82 44.97 0.08 2.82 16 15 H 0.07 2.60 5.71 -2.38 -0.01 2.58 16 16 C -0.11 -2.88 5.48 30.67 0.17 -2.72 16 17 C -0.11 -2.34 6.09 30.65 0.19 -2.15 16 18 C 0.06 1.14 6.55 86.32 0.57 1.71 16 19 N -0.69 -16.05 6.50 -491.68 -3.20 -19.25 16 20 C 0.07 1.96 1.99 44.94 0.09 2.05 16 21 H 0.04 1.14 6.39 -2.38 -0.02 1.13 16 22 C -0.15 -4.82 7.56 71.98 0.54 -4.27 16 23 H 0.03 1.45 3.28 -2.39 -0.01 1.44 16 24 H 0.06 2.18 6.14 -2.39 -0.01 2.16 16 25 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.02 0.94 5.02 -2.38 -0.01 0.93 16 28 H 0.05 2.06 6.17 -2.39 -0.01 2.05 16 29 H 0.07 2.22 6.79 -2.39 -0.02 2.20 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.52 7.06 -2.39 -0.02 1.50 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.35 6.81 8.71 -89.69 -0.78 6.03 16 37 H 0.05 2.00 4.64 -2.39 -0.01 1.99 16 38 H 0.07 1.84 8.03 -2.38 -0.02 1.82 16 39 H 0.05 1.71 7.47 -2.39 -0.02 1.69 16 Total: -1.00 -64.12 272.73 -0.98 -65.11 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.19 Total: 17.09 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.97 Total: -25.08 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -6.81 Total: -104.23 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -64.12 -0.98 -65.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307013413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.832 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds