Wall clock time and date at job start Mon Mar 30 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47482 * 2 1 4 4 C 1.50706 * 109.46953 * 240.00196 * 2 1 3 5 5 H 1.07997 * 119.99669 * 240.00012 * 4 2 1 6 6 C 1.37873 * 120.00113 * 59.99787 * 4 2 1 7 7 N 1.31524 * 119.99958 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46928 * 60.00252 * 8 6 4 10 10 H 1.48499 * 109.47304 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47205 * 300.00488 * 8 6 4 12 12 N 1.46901 * 109.47130 * 120.00405 * 2 1 3 13 13 C 1.46898 * 110.99867 * 274.99681 * 12 2 1 14 14 H 1.09005 * 109.50334 * 34.91902 * 13 12 2 15 15 C 1.53123 * 109.50383 * 274.80686 * 13 12 2 16 16 C 1.53124 * 109.16220 * 182.40483 * 15 13 12 17 17 C 1.53035 * 109.27475 * 57.64849 * 16 15 13 18 18 N 1.46846 * 109.52744 * 300.82106 * 17 16 15 19 19 C 1.46898 * 111.00056 * 185.84176 * 18 17 16 20 20 C 1.46846 * 111.19780 * 61.74478 * 18 17 16 21 21 H 1.09009 * 109.46169 * 58.27021 * 20 18 17 22 22 C 1.52997 * 109.46395 * 178.25311 * 20 18 17 23 23 H 1.09000 * 109.46961 * 300.00352 * 1 2 3 24 24 H 1.08999 * 109.47093 * 59.99728 * 1 2 3 25 25 H 1.08997 * 109.47482 * 180.02562 * 1 2 3 26 26 H 0.96998 * 119.99964 * 179.97438 * 7 6 4 27 27 H 1.00892 * 111.00072 * 38.95032 * 12 2 1 28 28 H 1.09001 * 109.51952 * 302.30743 * 15 13 12 29 29 H 1.09002 * 109.52604 * 62.43565 * 15 13 12 30 30 H 1.08993 * 109.50112 * 297.71243 * 16 15 13 31 31 H 1.08992 * 109.50394 * 177.58991 * 16 15 13 32 32 H 1.09008 * 109.45841 * 180.80263 * 17 16 15 33 33 H 1.09003 * 109.46290 * 60.84246 * 17 16 15 34 34 H 1.08998 * 109.47417 * 63.94819 * 19 18 17 35 35 H 1.08998 * 109.47570 * 183.95654 * 19 18 17 36 36 H 1.09003 * 109.47312 * 303.95641 * 19 18 17 37 37 H 1.08999 * 109.46833 * 59.99750 * 22 20 18 38 38 H 1.08998 * 109.47186 * 180.02562 * 22 20 18 39 39 H 1.09004 * 109.47066 * 299.99989 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8267 -0.4198 -5.2205 11 1 3.8073 -1.1189 -4.0079 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2225 2.3468 14 1 1.2587 0.9340 2.2904 15 6 3.4140 0.9782 2.3257 16 6 3.4970 1.8849 3.5569 17 6 3.3505 1.0348 4.8210 18 7 2.0610 0.3329 4.7938 19 6 1.8250 -0.3838 6.0542 20 6 1.9771 -0.5793 3.6461 21 1 2.7930 -1.3005 3.6950 22 6 0.6389 -1.3202 3.6805 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7093 1.1619 -3.4844 27 1 1.4495 -1.4979 1.4100 28 1 4.2380 0.2649 2.3425 29 1 3.4749 1.5838 1.4215 30 1 2.6958 2.6229 3.5199 31 1 4.4609 2.3935 3.5700 32 1 3.3949 1.6793 5.6991 33 1 4.1599 0.3060 4.8644 34 1 1.7489 0.3335 6.8714 35 1 0.8974 -0.9515 5.9813 36 1 2.6540 -1.0654 6.2453 37 1 -0.1770 -0.5990 3.6320 38 1 0.5766 -1.9976 2.8289 39 1 0.5639 -1.8920 4.6054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307171010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:13 Heat of formation + Delta-G solvation = -20.525355 kcal Electronic energy + Delta-G solvation = -16742.348931 eV Core-core repulsion = 14297.608340 eV Total energy + Delta-G solvation = -2444.740591 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56481 -37.44550 -34.83079 -34.21254 -32.32819 -29.28862 -27.71761 -27.23622 -26.98769 -23.40567 -22.37631 -21.69005 -20.60022 -18.41099 -16.95808 -16.79453 -16.37922 -15.93088 -15.47349 -15.24045 -14.78875 -14.53433 -14.21202 -13.66590 -13.50374 -13.24648 -13.10324 -12.94023 -12.84965 -12.77682 -12.57126 -12.33381 -12.12970 -11.99854 -11.89440 -11.66595 -11.47035 -10.98367 -10.95362 -10.46708 -9.23954 -8.95013 -8.08329 -6.19738 1.43331 1.45266 1.53049 2.44445 2.92193 3.19744 3.66128 3.78918 3.92520 4.11942 4.18568 4.34716 4.44937 4.56080 4.58790 4.70399 4.73682 4.76877 4.81430 4.89510 4.92959 4.96215 4.98826 5.09911 5.11828 5.16557 5.28562 5.31819 5.40273 5.50914 5.69808 5.84647 6.13362 6.22494 6.30492 6.67949 6.87366 6.97044 7.50306 8.97231 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043397 B = 0.006651 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.053053 B = 4208.733038 C = 4442.703645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.221 3.779 3 H -0.001 1.001 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.099 3.901 14 H 0.020 0.980 15 C -0.106 4.106 16 C -0.111 4.111 17 C 0.060 3.940 18 N -0.551 5.551 19 C 0.021 3.979 20 C 0.091 3.909 21 H 0.040 0.960 22 C -0.148 4.148 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -1.611 15.574 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.113 3.887 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.316 5.316 13 C -0.012 4.012 14 H 0.039 0.961 15 C -0.145 4.145 16 C -0.149 4.149 17 C -0.068 4.068 18 N -0.277 5.277 19 C -0.127 4.127 20 C -0.018 4.018 21 H 0.058 0.942 22 C -0.205 4.205 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.151 0.849 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.427 -1.078 15.226 15.456 hybrid contribution -0.175 -0.621 -0.988 1.180 sum 2.252 -1.699 14.238 14.515 Atomic orbital electron populations 1.22218 1.00181 0.99110 0.99793 1.18881 0.89785 0.92566 0.87512 0.98345 1.21430 1.30421 1.12454 0.91094 0.92762 1.25735 0.95473 0.95884 1.01916 1.70018 1.38084 1.24274 1.24003 0.85564 0.78584 0.78702 0.78446 1.19559 1.20979 1.19985 1.60776 1.57930 1.09485 1.03394 1.21415 0.96273 0.93767 0.89708 0.96150 1.21545 0.97184 0.98095 0.97649 1.21565 1.02342 0.97660 0.93315 1.22113 0.89072 0.96959 0.98615 1.61892 1.33118 1.29747 1.02939 1.22511 1.01327 0.98203 0.90641 1.21548 0.97745 0.92612 0.89872 0.94222 1.21966 0.96025 0.99933 1.02610 0.96081 0.92051 0.94888 0.93032 0.84905 0.92437 0.94602 0.92171 0.89727 0.88767 0.94789 0.90080 0.90353 0.95333 0.92792 0.92333 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.66 8.92 71.98 0.64 -7.02 16 2 C 0.22 11.58 2.39 44.17 0.11 11.68 16 3 H 0.00 -0.08 7.15 -2.39 -0.02 -0.10 16 4 C -0.52 -29.33 8.84 25.60 0.23 -29.11 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.45 5.30 84.65 0.45 0.90 16 7 N -0.92 -54.43 11.32 21.45 0.24 -54.19 16 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 N -0.68 -29.87 6.04 -473.04 -2.86 -32.73 16 13 C 0.10 3.72 1.93 44.97 0.09 3.80 16 14 H 0.02 0.87 7.12 -2.38 -0.02 0.85 16 15 C -0.11 -3.81 5.48 30.68 0.17 -3.64 16 16 C -0.11 -3.03 6.09 30.65 0.19 -2.84 16 17 C 0.06 1.41 5.46 86.33 0.47 1.88 16 18 N -0.55 -14.24 4.75 -897.18 -4.26 -18.50 16 19 C 0.02 0.40 9.30 127.69 1.19 1.59 16 20 C 0.09 2.72 2.10 44.94 0.09 2.82 16 21 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 22 C -0.15 -3.97 8.57 71.98 0.62 -3.35 16 23 H 0.02 0.94 7.43 -2.39 -0.02 0.92 16 24 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 25 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.33 13.56 5.96 -89.70 -0.53 13.02 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.48 7.48 -2.39 -0.02 1.46 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 1.78 8.12 -2.38 -0.02 1.76 16 33 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.42 5.75 -2.39 -0.01 1.40 16 36 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.65 6.24 -2.39 -0.01 1.64 16 39 H 0.08 1.74 6.15 -2.38 -0.01 1.73 16 Total: -1.00 -61.81 294.21 -0.14 -61.95 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.47 Total: 20.01 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 4.23 Total: -23.29 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -6.87 Total: -105.41 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -61.81 -0.14 -61.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307171010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.423 kcal (2) G-P(sol) polarization free energy of solvation -61.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds