Wall clock time and date at job start Mon Mar 30 2020 03:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47366 * 2 1 4 4 C 1.50700 * 109.46985 * 239.99671 * 2 1 3 5 5 H 1.08001 * 120.00092 * 245.44917 * 4 2 1 6 6 C 1.37877 * 120.00301 * 65.45261 * 4 2 1 7 7 N 1.31518 * 119.99738 * 9.72997 * 6 4 2 8 8 Si 1.86795 * 120.00022 * 189.73317 * 6 4 2 9 9 H 1.48500 * 109.47502 * 84.99470 * 8 6 4 10 10 H 1.48508 * 109.47081 * 204.98917 * 8 6 4 11 11 H 1.48502 * 109.47458 * 324.99140 * 8 6 4 12 12 N 1.46903 * 109.46918 * 119.99905 * 2 1 3 13 13 C 1.46896 * 111.00062 * 58.95490 * 12 2 1 14 14 C 1.46899 * 110.99671 * 294.99779 * 12 2 1 15 15 H 1.08995 * 109.53735 * 60.10102 * 14 12 2 16 16 C 1.53127 * 109.49997 * 180.19752 * 14 12 2 17 17 C 1.53117 * 109.15520 * 177.59367 * 16 14 12 18 18 C 1.53033 * 109.28536 * 302.34424 * 17 16 14 19 19 H 1.09000 * 109.45761 * 179.18999 * 18 17 16 20 20 C 1.53001 * 109.46266 * 299.17087 * 18 17 16 21 21 N 1.46850 * 109.51795 * 59.18165 * 18 17 16 22 22 C 1.46845 * 111.19732 * 298.25771 * 21 18 17 23 23 H 1.08997 * 109.47139 * 302.25591 * 1 2 3 24 24 H 1.09001 * 109.46806 * 62.25355 * 1 2 3 25 25 H 1.09002 * 109.47391 * 182.25106 * 1 2 3 26 26 H 0.96991 * 119.99776 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47310 * 296.04465 * 13 12 2 28 28 H 1.08997 * 109.47344 * 56.04556 * 13 12 2 29 29 H 1.08997 * 109.47374 * 176.04900 * 13 12 2 30 30 H 1.08993 * 109.51933 * 297.50167 * 16 14 12 31 31 H 1.08998 * 109.52168 * 57.63117 * 16 14 12 32 32 H 1.09005 * 109.50166 * 182.40193 * 17 16 14 33 33 H 1.08998 * 109.50573 * 62.29337 * 17 16 14 34 34 H 1.08995 * 109.47172 * 180.02562 * 20 18 17 35 35 H 1.08995 * 109.47276 * 60.04928 * 20 18 17 36 36 H 1.08999 * 109.47011 * 300.04656 * 20 18 17 37 37 H 1.00894 * 110.99837 * 62.36200 * 21 18 17 38 38 H 1.09000 * 109.45975 * 181.75992 * 22 21 18 39 39 H 1.08998 * 109.46477 * 301.72635 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5787 -1.6370 -1.1338 6 6 1.7944 -0.1776 -2.4796 7 7 1.3021 1.0366 -2.5937 8 14 2.1712 -1.1804 -4.0099 9 1 1.0165 -2.0605 -4.3219 10 1 2.4188 -0.2651 -5.1529 11 1 3.3778 -2.0126 -3.7718 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0393 2.4180 15 1 0.5632 0.1169 2.4804 16 6 2.1790 -0.7083 3.6447 17 6 1.8404 0.0914 4.9057 18 6 2.4459 1.4924 4.7935 19 1 2.1943 2.0690 5.6836 20 6 3.9670 1.3820 4.6704 21 7 1.9066 2.1662 3.6053 22 6 2.2597 1.4417 2.3779 23 1 -0.3633 0.5484 0.8690 24 1 -0.3633 0.4784 -0.9095 25 1 -0.3634 -1.0269 0.0404 26 1 1.1344 1.4113 -3.4725 27 1 0.4418 -2.0731 1.3348 28 1 1.8167 -2.5950 0.3319 29 1 1.9616 -2.5868 2.1059 30 1 1.7132 -1.6921 3.7011 31 1 3.2601 -0.8212 3.5631 32 1 2.2526 -0.4143 5.7789 33 1 0.7580 0.1698 5.0073 34 1 4.3984 2.3798 4.5910 35 1 4.2186 0.8058 3.7802 36 1 4.3674 0.8819 5.5522 37 1 0.9076 2.2861 3.6799 38 1 1.8731 1.9817 1.5135 39 1 3.3442 1.3633 2.3016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307336355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:51 Heat of formation + Delta-G solvation = 2.511640 kcal Electronic energy + Delta-G solvation = -17009.145700 eV Core-core repulsion = 14565.404069 eV Total energy + Delta-G solvation = -2443.741632 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45031 -36.50507 -32.82107 -31.45843 -30.47162 -28.42168 -27.31432 -25.17590 -24.61174 -22.75408 -21.56935 -19.36733 -18.49104 -16.51037 -15.81162 -15.10798 -15.00846 -14.58479 -14.07969 -13.80212 -13.10239 -12.96057 -12.46653 -12.11127 -12.01927 -11.73576 -11.71451 -11.56297 -11.13194 -10.91082 -10.85086 -10.77758 -10.65523 -10.50730 -10.43126 -10.08631 -9.92125 -9.44118 -8.91638 -8.31546 -8.02018 -7.12994 -6.02152 -4.01191 3.32060 3.38628 3.41560 4.40633 4.50375 4.84011 5.09130 5.17885 5.27294 5.32734 5.45841 5.55993 5.69614 5.78802 5.88267 5.93761 6.04345 6.16224 6.20950 6.26746 6.32644 6.39866 6.48965 6.58622 6.63208 6.74370 6.79786 6.85263 7.08276 7.26426 7.52172 7.59470 7.67610 7.85960 8.14168 8.36539 8.63743 9.03787 9.61899 11.07670 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043430 B = 0.007192 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.558782 B = 3892.364813 C = 4058.944679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.206 3.794 3 H 0.053 0.947 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.527 5.527 13 C 0.032 3.968 14 C 0.051 3.949 15 H 0.029 0.971 16 C -0.115 4.115 17 C -0.150 4.150 18 C 0.082 3.918 19 H 0.074 0.926 20 C -0.148 4.148 21 N -0.680 5.680 22 C 0.061 3.939 23 H 0.010 0.990 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.336 0.664 38 H 0.082 0.918 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -1.025 12.665 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.100 3.900 3 H 0.070 0.930 4 C -0.542 4.542 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.060 4.060 15 H 0.047 0.953 16 C -0.153 4.153 17 C -0.190 4.190 18 C -0.028 4.028 19 H 0.092 0.908 20 C -0.206 4.206 21 N -0.309 5.309 22 C -0.069 4.069 23 H 0.029 0.971 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.152 0.848 38 H 0.101 0.899 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.543 -0.438 12.441 12.544 hybrid contribution -1.542 -1.357 -0.830 2.215 sum 0.001 -1.795 11.610 11.748 Atomic orbital electron populations 1.22344 1.01594 0.98756 0.99853 1.19376 0.89038 0.95508 0.86051 0.92975 1.21092 1.35043 1.08199 0.89853 0.92001 1.24915 0.95514 0.94679 0.98929 1.69962 1.45441 1.13865 1.23724 0.86623 0.78633 0.80098 0.82726 1.20786 1.21365 1.19934 1.62392 1.59274 1.01615 1.01789 1.22268 0.96568 0.91535 1.01299 1.22252 0.96821 0.95552 0.91347 0.95284 1.21707 1.01961 0.98194 0.93394 1.22292 1.00432 0.97799 0.98437 1.21525 0.95521 0.92295 0.93460 0.90767 1.21912 0.94568 1.02129 1.01973 1.60828 1.17811 1.50133 1.02093 1.22158 1.01768 0.91317 0.91627 0.97067 0.91199 0.95038 0.93000 0.96891 0.90779 0.93791 0.92463 0.91009 0.91929 0.92578 0.92264 0.91453 0.92900 0.84750 0.89930 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 8.37 37.16 0.31 -3.64 16 2 C 0.21 5.10 1.95 -68.86 -0.13 4.97 16 3 H 0.05 1.42 6.01 -51.93 -0.31 1.11 16 4 C -0.50 -13.71 7.93 -34.44 -0.27 -13.98 16 5 H 0.06 1.69 6.58 -52.49 -0.35 1.35 16 6 C 0.06 1.69 5.18 -17.82 -0.09 1.60 16 7 N -0.89 -25.49 12.17 55.43 0.67 -24.82 16 8 Si 0.89 21.35 29.55 -169.99 -5.02 16.33 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.53 -11.16 4.61 -228.20 -1.05 -12.22 16 13 C 0.03 0.63 8.35 60.06 0.50 1.13 16 14 C 0.05 0.91 1.80 -67.63 -0.12 0.79 16 15 H 0.03 0.56 6.49 -51.93 -0.34 0.22 16 16 C -0.11 -1.72 4.53 -26.61 -0.12 -1.84 16 17 C -0.15 -1.87 5.60 -26.65 -0.15 -2.02 16 18 C 0.08 1.04 3.69 -67.72 -0.25 0.79 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.15 -1.84 8.59 37.16 0.32 -1.52 16 21 N -0.68 -10.01 6.67 -106.76 -0.71 -10.72 16 22 C 0.06 1.06 5.29 -3.84 -0.02 1.04 16 23 H 0.01 0.23 6.63 -51.93 -0.34 -0.11 16 24 H 0.07 1.83 6.86 -51.93 -0.36 1.47 16 25 H 0.03 0.72 6.35 -51.93 -0.33 0.39 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.01 0.25 6.46 -51.93 -0.34 -0.09 16 28 H 0.07 1.56 6.31 -51.93 -0.33 1.23 16 29 H 0.04 0.75 6.30 -51.93 -0.33 0.42 16 30 H 0.06 0.85 6.50 -51.93 -0.34 0.52 16 31 H 0.07 1.11 6.56 -51.93 -0.34 0.77 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.95 4.80 -51.93 -0.25 0.70 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.34 4.65 8.86 -39.30 -0.35 4.30 16 38 H 0.08 1.66 6.35 -51.93 -0.33 1.33 16 39 H 0.08 1.51 6.19 -51.93 -0.32 1.19 16 LS Contribution 281.86 15.07 4.25 4.25 Total: -1.00 -27.67 281.86 -8.08 -35.76 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.19 Total: 4.11 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.03 Total: -12.70 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -1.09 Total: -47.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.67 -8.08 -35.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.271 kcal (2) G-P(sol) polarization free energy of solvation -27.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds