Wall clock time and date at job start Mon Mar 30 2020 03:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47366 * 2 1 4 4 C 1.50700 * 109.46985 * 239.99671 * 2 1 3 5 5 H 1.08001 * 120.00092 * 245.44917 * 4 2 1 6 6 C 1.37877 * 120.00301 * 65.45261 * 4 2 1 7 7 N 1.31518 * 119.99738 * 9.72997 * 6 4 2 8 8 Si 1.86795 * 120.00022 * 189.73317 * 6 4 2 9 9 H 1.48500 * 109.47502 * 84.99470 * 8 6 4 10 10 H 1.48508 * 109.47081 * 204.98917 * 8 6 4 11 11 H 1.48502 * 109.47458 * 324.99140 * 8 6 4 12 12 N 1.46903 * 109.46918 * 119.99905 * 2 1 3 13 13 C 1.46896 * 111.00062 * 58.95490 * 12 2 1 14 14 C 1.46899 * 110.99671 * 294.99779 * 12 2 1 15 15 H 1.08995 * 109.53735 * 60.10102 * 14 12 2 16 16 C 1.53127 * 109.49997 * 180.19752 * 14 12 2 17 17 C 1.53117 * 109.15520 * 177.59367 * 16 14 12 18 18 C 1.53033 * 109.28536 * 302.34424 * 17 16 14 19 19 H 1.09000 * 109.45761 * 179.18999 * 18 17 16 20 20 C 1.53001 * 109.46266 * 299.17087 * 18 17 16 21 21 N 1.46850 * 109.51795 * 59.18165 * 18 17 16 22 22 C 1.46845 * 111.19732 * 298.25771 * 21 18 17 23 23 H 1.08997 * 109.47139 * 302.25591 * 1 2 3 24 24 H 1.09001 * 109.46806 * 62.25355 * 1 2 3 25 25 H 1.09002 * 109.47391 * 182.25106 * 1 2 3 26 26 H 0.96991 * 119.99776 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47310 * 296.04465 * 13 12 2 28 28 H 1.08997 * 109.47344 * 56.04556 * 13 12 2 29 29 H 1.08997 * 109.47374 * 176.04900 * 13 12 2 30 30 H 1.08993 * 109.51933 * 297.50167 * 16 14 12 31 31 H 1.08998 * 109.52168 * 57.63117 * 16 14 12 32 32 H 1.09005 * 109.50166 * 182.40193 * 17 16 14 33 33 H 1.08998 * 109.50573 * 62.29337 * 17 16 14 34 34 H 1.08995 * 109.47172 * 180.02562 * 20 18 17 35 35 H 1.08995 * 109.47276 * 60.04928 * 20 18 17 36 36 H 1.08999 * 109.47011 * 300.04656 * 20 18 17 37 37 H 1.00894 * 110.99837 * 62.36200 * 21 18 17 38 38 H 1.09000 * 109.45975 * 181.75992 * 22 21 18 39 39 H 1.08998 * 109.46477 * 301.72635 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5787 -1.6370 -1.1338 6 6 1.7944 -0.1776 -2.4796 7 7 1.3021 1.0366 -2.5937 8 14 2.1712 -1.1804 -4.0099 9 1 1.0165 -2.0605 -4.3219 10 1 2.4188 -0.2651 -5.1529 11 1 3.3778 -2.0126 -3.7718 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0393 2.4180 15 1 0.5632 0.1169 2.4804 16 6 2.1790 -0.7083 3.6447 17 6 1.8404 0.0914 4.9057 18 6 2.4459 1.4924 4.7935 19 1 2.1943 2.0690 5.6836 20 6 3.9670 1.3820 4.6704 21 7 1.9066 2.1662 3.6053 22 6 2.2597 1.4417 2.3779 23 1 -0.3633 0.5484 0.8690 24 1 -0.3633 0.4784 -0.9095 25 1 -0.3634 -1.0269 0.0404 26 1 1.1344 1.4113 -3.4725 27 1 0.4418 -2.0731 1.3348 28 1 1.8167 -2.5950 0.3319 29 1 1.9616 -2.5868 2.1059 30 1 1.7132 -1.6921 3.7011 31 1 3.2601 -0.8212 3.5631 32 1 2.2526 -0.4143 5.7789 33 1 0.7580 0.1698 5.0073 34 1 4.3984 2.3798 4.5910 35 1 4.2186 0.8058 3.7802 36 1 4.3674 0.8819 5.5522 37 1 0.9076 2.2861 3.6799 38 1 1.8731 1.9817 1.5135 39 1 3.3442 1.3633 2.3016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307336355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:50 Heat of formation + Delta-G solvation = -16.994352 kcal Electronic energy + Delta-G solvation = -17009.991544 eV Core-core repulsion = 14565.404069 eV Total energy + Delta-G solvation = -2444.587475 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79570 -38.07569 -34.76569 -32.71244 -31.96697 -30.12986 -28.52568 -27.24922 -26.14468 -24.09030 -23.08121 -20.85855 -19.89744 -18.35153 -17.30424 -16.88839 -16.22036 -16.11792 -15.50965 -15.45355 -14.80708 -14.32757 -13.94789 -13.66891 -13.47750 -13.21892 -13.06433 -12.89791 -12.75212 -12.60536 -12.56580 -12.47750 -12.24654 -12.06249 -11.88274 -11.71167 -11.24312 -11.06443 -10.91406 -10.41671 -9.23719 -8.83624 -8.13342 -6.18997 1.41705 1.42311 1.51994 2.43085 3.17152 3.21125 3.52433 3.90528 3.98470 4.10431 4.18291 4.38092 4.51695 4.57812 4.60040 4.65003 4.71510 4.79844 4.81886 4.87030 4.99309 5.03414 5.07294 5.11942 5.19274 5.29112 5.30233 5.31841 5.48161 5.55869 5.67551 5.74960 6.11086 6.20363 6.49512 6.53561 6.80393 6.94383 7.48324 8.95932 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.043430 B = 0.007192 C = 0.006897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.558782 B = 3892.364813 C = 4058.944679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.213 3.787 3 H 0.021 0.979 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.538 5.538 13 C 0.036 3.964 14 C 0.054 3.946 15 H 0.021 0.979 16 C -0.108 4.108 17 C -0.142 4.142 18 C 0.080 3.920 19 H 0.098 0.902 20 C -0.146 4.146 21 N -0.682 5.682 22 C 0.073 3.927 23 H 0.026 0.974 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.261 0.739 27 H 0.013 0.987 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.341 0.659 38 H 0.048 0.952 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -2.011 14.427 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.106 3.894 3 H 0.038 0.962 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.262 5.262 13 C -0.112 4.112 14 C -0.056 4.056 15 H 0.039 0.961 16 C -0.146 4.146 17 C -0.181 4.181 18 C -0.030 4.030 19 H 0.116 0.884 20 C -0.204 4.204 21 N -0.311 5.311 22 C -0.057 4.057 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.663 -1.433 14.226 14.394 hybrid contribution -1.556 -1.020 -1.308 2.274 sum 0.107 -2.452 12.918 13.149 Atomic orbital electron populations 1.22137 1.01055 0.98777 0.99056 1.19082 0.89250 0.93950 0.87116 0.96157 1.21405 1.34977 1.08113 0.91181 0.92501 1.25669 0.95512 0.95538 1.01808 1.70083 1.46445 1.15192 1.24289 0.85641 0.78633 0.78672 0.79127 1.20114 1.21125 1.19410 1.62294 1.59570 1.02430 1.01896 1.22245 0.96671 0.90587 1.01682 1.22316 0.96356 0.95766 0.91205 0.96141 1.21659 1.01521 0.98442 0.93003 1.22242 1.00929 0.97170 0.97773 1.21690 0.95496 0.92772 0.93012 0.88363 1.21895 0.94569 1.01840 1.02054 1.60793 1.18416 1.50021 1.01850 1.21855 1.00690 0.91139 0.91991 0.95537 0.94008 0.94606 0.93033 0.96888 0.92597 0.90848 0.91901 0.91427 0.89362 0.92014 0.92654 0.93588 0.90520 0.84086 0.93399 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.30 8.37 71.98 0.60 -6.70 16 2 C 0.21 10.80 1.95 44.17 0.09 10.89 16 3 H 0.02 1.17 6.01 -2.39 -0.01 1.16 16 4 C -0.52 -28.74 7.93 25.60 0.20 -28.53 16 5 H 0.06 3.15 6.58 -2.91 -0.02 3.13 16 6 C 0.01 0.76 5.18 84.65 0.44 1.20 16 7 N -0.92 -53.91 12.17 21.45 0.26 -53.65 16 8 Si 0.95 44.15 29.55 68.60 2.03 46.18 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 N -0.54 -22.85 4.61 -875.90 -4.04 -26.89 16 13 C 0.04 1.40 8.35 127.69 1.07 2.46 16 14 C 0.05 1.90 1.80 44.97 0.08 1.98 16 15 H 0.02 0.77 6.49 -2.39 -0.02 0.75 16 16 C -0.11 -3.00 4.53 30.68 0.14 -2.86 16 17 C -0.14 -3.03 5.60 30.64 0.17 -2.86 16 18 C 0.08 1.79 3.69 44.94 0.17 1.96 16 19 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 20 C -0.15 -3.30 8.59 71.98 0.62 -2.68 16 21 N -0.68 -19.30 6.67 -491.69 -3.28 -22.58 16 22 C 0.07 2.61 5.29 86.32 0.46 3.07 16 23 H 0.03 1.15 6.63 -2.39 -0.02 1.13 16 24 H 0.04 2.23 6.86 -2.39 -0.02 2.22 16 25 H 0.03 1.65 6.35 -2.39 -0.02 1.64 16 26 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.01 0.49 6.46 -2.38 -0.02 0.47 16 28 H 0.06 2.33 6.31 -2.39 -0.02 2.31 16 29 H 0.07 2.36 6.30 -2.39 -0.02 2.34 16 30 H 0.06 1.68 6.50 -2.39 -0.02 1.66 16 31 H 0.07 1.96 6.56 -2.39 -0.02 1.94 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.24 4.80 -2.39 -0.01 1.23 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.34 9.01 8.86 -89.70 -0.79 8.21 16 38 H 0.05 2.02 6.35 -2.39 -0.02 2.01 16 39 H 0.07 2.65 6.19 -2.39 -0.01 2.63 16 Total: -1.00 -59.96 281.86 -0.76 -60.72 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.24 Total: 18.31 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.03 Total: -22.09 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -7.06 Total: -103.12 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -59.96 -0.76 -60.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.722 kcal (2) G-P(sol) polarization free energy of solvation -59.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds