Wall clock time and date at job start Mon Mar 30 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.50702 * 109.47403 * 239.99999 * 2 1 3 5 5 H 1.07995 * 120.00322 * 245.39744 * 4 2 1 6 6 C 1.37878 * 119.99634 * 65.39865 * 4 2 1 7 7 N 1.31518 * 119.99925 * 5.16537 * 6 4 2 8 8 Si 1.86799 * 119.99915 * 185.16550 * 6 4 2 9 9 H 1.48500 * 109.47335 * 94.99944 * 8 6 4 10 10 H 1.48498 * 109.47323 * 214.99787 * 8 6 4 11 11 H 1.48503 * 109.47015 * 334.99941 * 8 6 4 12 12 N 1.46904 * 109.47216 * 119.99814 * 2 1 3 13 13 C 1.46895 * 111.00225 * 275.00233 * 12 2 1 14 14 C 1.52996 * 109.47101 * 179.97438 * 13 12 2 15 15 N 1.46896 * 109.47223 * 185.51307 * 14 13 12 16 16 C 1.47903 * 110.99850 * 65.16272 * 15 14 13 17 17 C 1.53997 * 107.22454 * 214.25298 * 16 15 14 18 18 C 1.54598 * 105.13968 * 1.12928 * 17 16 15 19 19 C 1.48811 * 111.18627 * 307.82429 * 15 14 13 20 20 H 1.08999 * 110.66000 * 41.00382 * 19 15 14 21 21 C 1.53005 * 110.69965 * 278.02322 * 19 15 14 22 22 H 1.09008 * 109.46744 * 174.97488 * 1 2 3 23 23 H 1.08997 * 109.47271 * 294.97673 * 1 2 3 24 24 H 1.08995 * 109.46882 * 54.97972 * 1 2 3 25 25 H 0.97004 * 119.99389 * 180.02562 * 7 6 4 26 26 H 1.00907 * 110.99929 * 151.04565 * 12 2 1 27 27 H 1.09001 * 109.46747 * 59.99991 * 13 12 2 28 28 H 1.08998 * 109.46880 * 300.00015 * 13 12 2 29 29 H 1.09009 * 109.47104 * 65.51656 * 14 13 12 30 30 H 1.08997 * 109.47413 * 305.51512 * 14 13 12 31 31 H 1.08997 * 109.91892 * 94.80515 * 16 15 14 32 32 H 1.09000 * 109.91859 * 333.70190 * 16 15 14 33 33 H 1.09001 * 110.30691 * 120.04017 * 17 16 15 34 34 H 1.08995 * 110.31198 * 242.20851 * 17 16 15 35 35 H 1.09002 * 110.72394 * 140.31601 * 18 17 16 36 36 H 1.09007 * 110.72029 * 263.41822 * 18 17 16 37 37 H 1.08999 * 109.46550 * 304.57105 * 21 19 15 38 38 H 1.09002 * 109.46752 * 64.56866 * 21 19 15 39 39 H 1.08999 * 109.46884 * 184.57524 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5795 -1.6365 -1.1338 6 6 1.7935 -0.1780 -2.4796 7 7 1.2174 0.9988 -2.5937 8 14 2.2882 -1.1280 -4.0100 9 1 1.1246 -1.9045 -4.5084 10 1 2.7351 -0.1776 -5.0598 11 1 3.3981 -2.0572 -3.6786 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5950 -0.5332 3.5745 15 7 2.5333 0.3444 4.7508 16 6 1.1334 0.6860 5.0844 17 6 1.1333 2.1253 5.6321 18 6 2.6078 2.5845 5.5607 19 6 3.2128 1.6423 4.4898 20 1 2.9828 2.0019 3.4869 21 6 4.7251 1.5090 4.6801 22 1 -0.3633 -1.0238 -0.0900 23 1 -0.3634 0.4339 0.9315 24 1 -0.3633 0.5897 -0.8416 25 1 1.0491 1.3732 -3.4726 26 1 2.9174 -1.1205 1.0287 27 1 1.0870 0.6162 2.5525 28 1 2.7588 1.0462 2.1182 29 1 3.6265 -0.8429 3.4059 30 1 1.9747 -1.4131 3.7446 31 1 0.7543 0.0004 5.8421 32 1 0.5140 0.6293 4.1893 33 1 0.5071 2.7661 5.0114 34 1 0.7828 2.1374 6.6640 35 1 2.6728 3.6245 5.2406 36 1 3.1016 2.4470 6.5227 37 1 4.9329 1.1226 5.6779 38 1 5.1260 0.8229 3.9340 39 1 5.1934 2.4864 4.5641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308592948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:20 Heat of formation + Delta-G solvation = -4.349931 kcal Electronic energy + Delta-G solvation = -16256.540074 eV Core-core repulsion = 13812.500902 eV Total energy + Delta-G solvation = -2444.039172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34162 -35.88956 -33.18271 -31.64822 -31.32088 -28.85919 -26.00308 -25.40960 -24.89208 -22.52661 -20.84846 -19.87616 -19.19692 -16.46247 -16.25845 -15.20605 -14.98852 -14.52334 -14.38045 -13.73914 -13.51038 -13.07446 -12.65678 -12.35019 -12.08762 -11.87382 -11.63429 -11.44662 -11.15687 -11.14065 -10.95318 -10.73528 -10.68142 -10.60674 -10.50192 -10.31497 -10.10792 -9.93169 -8.87491 -8.50145 -8.13624 -7.26734 -6.06427 -4.10239 3.28949 3.35716 3.38979 4.11616 4.39645 4.65537 4.75013 5.00977 5.21187 5.27644 5.31922 5.45299 5.50563 5.54143 5.69138 5.74508 5.81053 5.83540 5.91155 5.99758 6.09829 6.14476 6.16588 6.24700 6.42442 6.55692 6.82201 7.05958 7.07252 7.15520 7.23145 7.43365 7.77449 7.83428 8.16118 8.34120 8.66510 9.01174 9.55550 11.02652 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.005554 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.905894 B = 5040.007205 C = 5196.490130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.210 3.790 3 H 0.005 0.995 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.686 5.686 13 C 0.026 3.974 14 C 0.047 3.953 15 N -0.511 5.511 16 C 0.028 3.972 17 C -0.131 4.131 18 C -0.118 4.118 19 C 0.047 3.953 20 H 0.066 0.934 21 C -0.133 4.133 22 H 0.034 0.966 23 H 0.006 0.994 24 H 0.064 0.936 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 2.333 14.310 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H 0.022 0.978 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.317 5.317 13 C -0.105 4.105 14 C -0.082 4.082 15 N -0.234 5.234 16 C -0.100 4.100 17 C -0.169 4.169 18 C -0.156 4.156 19 C -0.061 4.061 20 H 0.083 0.917 21 C -0.191 4.191 22 H 0.053 0.947 23 H 0.025 0.975 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.061 1.926 14.765 15.032 hybrid contribution 0.479 0.523 -1.926 2.053 sum 2.540 2.450 12.839 13.315 Atomic orbital electron populations 1.21634 0.98248 0.99684 0.98013 1.19108 0.92212 0.92687 0.85763 0.97759 1.21255 1.35708 1.08258 0.90625 0.92122 1.24940 0.95174 0.94738 0.99112 1.69960 1.43140 1.16145 1.23718 0.86519 0.78786 0.79710 0.82608 1.20625 1.21310 1.19830 1.60680 1.32035 1.32979 1.06054 1.22570 0.99799 0.95206 0.92953 1.22291 1.01698 0.96373 0.87845 1.65068 1.11462 1.12743 1.34173 1.22891 0.90705 0.95983 1.00402 1.22381 0.97063 0.96194 1.01285 1.22511 0.95341 0.98538 0.99258 1.22967 0.95055 0.89690 0.98405 0.91663 1.21633 0.94051 1.01242 1.02180 0.94655 0.97525 0.91735 0.92939 0.85192 0.91867 0.96061 0.91014 0.90077 0.90722 0.92712 0.91618 0.91337 0.91412 0.91010 0.92126 0.92678 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.22 37.16 0.34 -2.61 16 2 C 0.21 5.42 2.47 -68.86 -0.17 5.24 16 3 H 0.00 0.13 7.78 -51.93 -0.40 -0.27 16 4 C -0.52 -14.43 8.49 -34.44 -0.29 -14.73 16 5 H 0.06 1.66 7.68 -52.49 -0.40 1.26 16 6 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 7 N -0.89 -25.88 11.99 55.43 0.66 -25.22 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.69 -14.87 6.30 -107.95 -0.68 -15.55 16 13 C 0.03 0.48 4.63 -3.83 -0.02 0.46 16 14 C 0.05 0.72 5.60 -3.83 -0.02 0.70 16 15 N -0.51 -7.14 5.24 -222.40 -1.16 -8.31 16 16 C 0.03 0.37 6.45 -2.75 -0.02 0.35 16 17 C -0.13 -1.46 6.93 -25.37 -0.18 -1.63 16 18 C -0.12 -1.31 6.50 -24.87 -0.16 -1.47 16 19 C 0.05 0.61 2.69 -65.63 -0.18 0.44 16 20 H 0.07 0.98 5.51 -51.93 -0.29 0.70 16 21 C -0.13 -1.56 9.49 37.16 0.35 -1.21 16 22 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 23 H 0.01 0.13 7.35 -51.93 -0.38 -0.25 16 24 H 0.06 1.74 6.84 -51.93 -0.36 1.38 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.33 7.01 8.26 -39.29 -0.32 6.68 16 27 H 0.06 1.21 5.33 -51.93 -0.28 0.94 16 28 H 0.02 0.41 6.19 -51.93 -0.32 0.09 16 29 H 0.07 1.08 7.77 -51.92 -0.40 0.68 16 30 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.79 5.79 -51.93 -0.30 0.49 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.68 7.77 -51.93 -0.40 0.28 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -28.60 299.91 -8.91 -37.51 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.80 Total: 3.46 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.43 Total: -12.81 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -1.18 Total: -49.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.60 -8.91 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308592948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.158 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds