Wall clock time and date at job start Mon Mar 30 2020 03:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.50702 * 109.47403 * 239.99999 * 2 1 3 5 5 H 1.07995 * 120.00322 * 245.39744 * 4 2 1 6 6 C 1.37878 * 119.99634 * 65.39865 * 4 2 1 7 7 N 1.31518 * 119.99925 * 5.16537 * 6 4 2 8 8 Si 1.86799 * 119.99915 * 185.16550 * 6 4 2 9 9 H 1.48500 * 109.47335 * 94.99944 * 8 6 4 10 10 H 1.48498 * 109.47323 * 214.99787 * 8 6 4 11 11 H 1.48503 * 109.47015 * 334.99941 * 8 6 4 12 12 N 1.46904 * 109.47216 * 119.99814 * 2 1 3 13 13 C 1.46895 * 111.00225 * 275.00233 * 12 2 1 14 14 C 1.52996 * 109.47101 * 179.97438 * 13 12 2 15 15 N 1.46896 * 109.47223 * 185.51307 * 14 13 12 16 16 C 1.47903 * 110.99850 * 65.16272 * 15 14 13 17 17 C 1.53997 * 107.22454 * 214.25298 * 16 15 14 18 18 C 1.54598 * 105.13968 * 1.12928 * 17 16 15 19 19 C 1.48811 * 111.18627 * 307.82429 * 15 14 13 20 20 H 1.08999 * 110.66000 * 41.00382 * 19 15 14 21 21 C 1.53005 * 110.69965 * 278.02322 * 19 15 14 22 22 H 1.09008 * 109.46744 * 174.97488 * 1 2 3 23 23 H 1.08997 * 109.47271 * 294.97673 * 1 2 3 24 24 H 1.08995 * 109.46882 * 54.97972 * 1 2 3 25 25 H 0.97004 * 119.99389 * 180.02562 * 7 6 4 26 26 H 1.00907 * 110.99929 * 151.04565 * 12 2 1 27 27 H 1.09001 * 109.46747 * 59.99991 * 13 12 2 28 28 H 1.08998 * 109.46880 * 300.00015 * 13 12 2 29 29 H 1.09009 * 109.47104 * 65.51656 * 14 13 12 30 30 H 1.08997 * 109.47413 * 305.51512 * 14 13 12 31 31 H 1.08997 * 109.91892 * 94.80515 * 16 15 14 32 32 H 1.09000 * 109.91859 * 333.70190 * 16 15 14 33 33 H 1.09001 * 110.30691 * 120.04017 * 17 16 15 34 34 H 1.08995 * 110.31198 * 242.20851 * 17 16 15 35 35 H 1.09002 * 110.72394 * 140.31601 * 18 17 16 36 36 H 1.09007 * 110.72029 * 263.41822 * 18 17 16 37 37 H 1.08999 * 109.46550 * 304.57105 * 21 19 15 38 38 H 1.09002 * 109.46752 * 64.56866 * 21 19 15 39 39 H 1.08999 * 109.46884 * 184.57524 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5795 -1.6365 -1.1338 6 6 1.7935 -0.1780 -2.4796 7 7 1.2174 0.9988 -2.5937 8 14 2.2882 -1.1280 -4.0100 9 1 1.1246 -1.9045 -4.5084 10 1 2.7351 -0.1776 -5.0598 11 1 3.3981 -2.0572 -3.6786 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5950 -0.5332 3.5745 15 7 2.5333 0.3444 4.7508 16 6 1.1334 0.6860 5.0844 17 6 1.1333 2.1253 5.6321 18 6 2.6078 2.5845 5.5607 19 6 3.2128 1.6423 4.4898 20 1 2.9828 2.0019 3.4869 21 6 4.7251 1.5090 4.6801 22 1 -0.3633 -1.0238 -0.0900 23 1 -0.3634 0.4339 0.9315 24 1 -0.3633 0.5897 -0.8416 25 1 1.0491 1.3732 -3.4726 26 1 2.9174 -1.1205 1.0287 27 1 1.0870 0.6162 2.5525 28 1 2.7588 1.0462 2.1182 29 1 3.6265 -0.8429 3.4059 30 1 1.9747 -1.4131 3.7446 31 1 0.7543 0.0004 5.8421 32 1 0.5140 0.6293 4.1893 33 1 0.5071 2.7661 5.0114 34 1 0.7828 2.1374 6.6640 35 1 2.6728 3.6245 5.2406 36 1 3.1016 2.4470 6.5227 37 1 4.9329 1.1226 5.6779 38 1 5.1260 0.8229 3.9340 39 1 5.1934 2.4864 4.5641 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308592948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:20 Heat of formation + Delta-G solvation = -23.867283 kcal Electronic energy + Delta-G solvation = -16257.386409 eV Core-core repulsion = 13812.500902 eV Total energy + Delta-G solvation = -2444.885508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46115 -37.68229 -34.91279 -33.23635 -32.29675 -30.60651 -27.61766 -27.01865 -26.27959 -23.89690 -21.93942 -21.74577 -20.40107 -18.50504 -17.46940 -16.81504 -16.41294 -16.06536 -15.59152 -15.22246 -15.05809 -14.44344 -14.20770 -13.80606 -13.48344 -13.19203 -12.99972 -12.82513 -12.78404 -12.62603 -12.35177 -12.34835 -12.30964 -12.11045 -11.97217 -11.70156 -11.61059 -11.31866 -10.96049 -10.61836 -9.37834 -9.08123 -8.19797 -6.31773 1.40428 1.41882 1.52531 2.39193 3.00303 3.11930 3.53628 3.74906 3.81041 4.01117 4.10380 4.28182 4.34577 4.43446 4.54231 4.60751 4.70996 4.76764 4.83306 4.90289 4.96492 4.97565 5.02263 5.07198 5.11546 5.13137 5.21203 5.33887 5.36059 5.40428 5.62638 5.74735 5.97924 6.05558 6.10711 6.38662 6.72367 6.94959 7.38852 8.89109 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.005554 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.905894 B = 5040.007205 C = 5196.490130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.214 3.786 3 H -0.032 1.032 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.265 1.265 12 N -0.682 5.682 13 C 0.035 3.965 14 C 0.060 3.940 15 N -0.509 5.509 16 C 0.023 3.977 17 C -0.129 4.129 18 C -0.113 4.113 19 C 0.040 3.960 20 H 0.041 0.959 21 C -0.129 4.129 22 H 0.034 0.966 23 H 0.023 0.977 24 H 0.041 0.959 25 H 0.263 0.737 26 H 0.334 0.666 27 H 0.054 0.946 28 H 0.011 0.989 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.043 0.957 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 1.871 15.300 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 H -0.014 1.014 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.789 3.211 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.189 1.189 12 N -0.313 5.313 13 C -0.096 4.096 14 C -0.069 4.069 15 N -0.232 5.232 16 C -0.104 4.104 17 C -0.167 4.167 18 C -0.151 4.151 19 C -0.068 4.068 20 H 0.059 0.941 21 C -0.187 4.187 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.073 0.927 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.581 1.460 15.780 16.056 hybrid contribution 0.312 0.705 -2.178 2.311 sum 2.893 2.166 13.602 14.074 Atomic orbital electron populations 1.21459 0.97849 0.99191 0.97882 1.18921 0.92525 0.90872 0.87120 1.01419 1.21573 1.36024 1.08455 0.91700 0.92032 1.25784 0.95069 0.95531 1.02261 1.70083 1.43973 1.17529 1.24536 0.85447 0.78672 0.78383 0.78555 1.20082 1.20894 1.18924 1.60604 1.32242 1.33125 1.05368 1.22556 0.99273 0.94772 0.92967 1.22128 1.01664 0.96198 0.86916 1.65136 1.12222 1.13147 1.32704 1.22979 0.89762 0.97721 0.99983 1.22394 0.97227 0.94685 1.02351 1.22519 0.95059 0.98497 0.99054 1.23054 0.96112 0.89707 0.97943 0.94146 1.21610 0.92970 1.01839 1.02262 0.94725 0.95846 0.94021 0.92786 0.84845 0.92727 0.97115 0.90525 0.90112 0.89566 0.94617 0.91859 0.89249 0.90440 0.89648 0.91227 0.93824 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 9.22 71.98 0.66 -4.70 16 2 C 0.21 11.27 2.47 44.17 0.11 11.38 16 3 H -0.03 -1.88 7.78 -2.38 -0.02 -1.90 16 4 C -0.54 -30.14 8.49 25.60 0.22 -29.93 16 5 H 0.06 3.36 7.68 -2.91 -0.02 3.33 16 6 C 0.01 0.72 5.29 84.65 0.45 1.17 16 7 N -0.92 -54.28 11.99 21.45 0.26 -54.03 16 8 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.68 -29.78 6.30 -495.45 -3.12 -32.91 16 13 C 0.04 1.31 4.63 86.30 0.40 1.71 16 14 C 0.06 1.81 5.60 86.30 0.48 2.29 16 15 N -0.51 -13.60 5.24 -857.55 -4.49 -18.09 16 16 C 0.02 0.58 6.45 86.45 0.56 1.14 16 17 C -0.13 -2.61 6.93 31.47 0.22 -2.39 16 18 C -0.11 -2.27 6.50 31.80 0.21 -2.06 16 19 C 0.04 1.00 2.69 45.21 0.12 1.12 16 20 H 0.04 1.23 5.51 -2.39 -0.01 1.21 16 21 C -0.13 -2.84 9.49 71.98 0.68 -2.16 16 22 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 23 H 0.02 1.06 7.35 -2.39 -0.02 1.04 16 24 H 0.04 2.28 6.84 -2.39 -0.02 2.26 16 25 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.33 14.18 8.26 -89.69 -0.74 13.44 16 27 H 0.05 2.13 5.33 -2.39 -0.01 2.11 16 28 H 0.01 0.43 6.19 -2.39 -0.01 0.41 16 29 H 0.08 2.24 7.77 -2.38 -0.02 2.22 16 30 H 0.08 2.46 8.13 -2.39 -0.02 2.44 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.02 5.79 -2.39 -0.01 1.00 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.50 8.06 -2.38 -0.02 1.48 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 1.04 7.77 -2.39 -0.02 1.02 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -60.58 299.91 -0.95 -61.53 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.27 Total: 20.07 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 4.11 Total: -22.42 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -7.36 Total: -105.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -60.58 -0.95 -61.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308592948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.664 kcal (2) G-P(sol) polarization free energy of solvation -60.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds