Wall clock time and date at job start Mon Mar 30 2020 03:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.36760 * 2 1 4 4 C 1.54374 * 110.32627 * 237.81551 * 2 1 3 5 5 N 1.48562 * 104.59891 * 217.25137 * 4 2 1 6 6 C 1.46896 * 111.00102 * 159.03972 * 5 4 2 7 7 C 1.48568 * 104.21755 * 39.48414 * 5 4 2 8 8 C 1.54268 * 110.32317 * 122.18143 * 2 1 3 9 9 H 1.09002 * 110.32347 * 237.79510 * 8 2 1 10 10 N 1.46900 * 110.32359 * 359.89995 * 8 2 1 11 11 C 1.46898 * 111.00221 * 195.67934 * 10 8 2 12 12 C 1.53000 * 109.47166 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46684 * 179.97438 * 12 11 10 14 14 C 1.50711 * 109.47014 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99445 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00130 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00049 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47291 * 89.99700 * 18 16 14 20 20 H 1.48499 * 109.47149 * 210.00028 * 18 16 14 21 21 H 1.48497 * 109.46773 * 329.99529 * 18 16 14 22 22 H 1.08994 * 109.47824 * 304.11808 * 1 2 3 23 23 H 1.09001 * 109.47264 * 64.12486 * 1 2 3 24 24 H 1.09009 * 109.47008 * 184.11723 * 1 2 3 25 25 H 1.08999 * 110.41337 * 336.03475 * 4 2 1 26 26 H 1.09003 * 110.41163 * 98.47563 * 4 2 1 27 27 H 1.08994 * 109.47686 * 304.58521 * 6 5 4 28 28 H 1.09007 * 109.46890 * 64.58617 * 6 5 4 29 29 H 1.08995 * 109.47272 * 184.58112 * 6 5 4 30 30 H 1.09002 * 110.40652 * 201.74018 * 7 5 4 31 31 H 1.08995 * 110.50730 * 79.34627 * 7 5 4 32 32 H 1.00904 * 110.99976 * 319.62820 * 10 8 2 33 33 H 1.09000 * 109.46601 * 299.99803 * 11 10 8 34 34 H 1.08998 * 109.47109 * 59.99365 * 11 10 8 35 35 H 1.09000 * 109.47140 * 299.99400 * 12 11 10 36 36 H 1.08998 * 109.46994 * 59.99934 * 12 11 10 37 37 H 1.08992 * 109.47474 * 299.99918 * 13 12 11 38 38 H 1.08998 * 109.47129 * 60.00421 * 13 12 11 39 39 H 0.96999 * 119.99727 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2694 -1.4829 -0.7224 6 6 3.6069 -2.6217 -1.5867 7 6 2.8806 -1.9422 0.6360 8 6 2.0658 -0.7705 1.2244 9 1 2.7081 -0.1268 1.8254 10 7 0.9512 -1.2781 2.0356 11 6 1.4124 -1.6805 3.3709 12 6 0.2264 -2.2030 4.1841 13 6 0.7070 -2.6226 5.5748 14 6 -0.4613 -3.1368 6.3761 15 1 -1.4477 -3.1620 5.9371 16 6 -0.2708 -3.5748 7.6694 17 7 0.9304 -3.5435 8.2040 18 14 -1.7187 -4.2127 8.6623 19 1 -1.8576 -5.6760 8.4510 20 1 -1.4887 -3.9404 10.1039 21 1 -2.9609 -3.5287 8.2214 22 1 -0.3634 0.5764 0.8507 23 1 -0.3634 0.4485 -0.9246 24 1 -0.3633 -1.0251 0.0738 25 1 1.3229 -1.4848 -1.5803 26 1 2.3395 -0.0779 -2.0208 27 1 2.7426 -3.2800 -1.6745 28 1 3.8878 -2.2572 -2.5748 29 1 4.4407 -3.1730 -1.1523 30 1 3.7670 -2.1308 1.2416 31 1 2.2654 -2.8398 0.5740 32 1 0.2103 -0.5960 2.0993 33 1 2.1613 -2.4667 3.2750 34 1 1.8508 -0.8211 3.8781 35 1 -0.5228 -1.4171 4.2801 36 1 -0.2115 -3.0625 3.6767 37 1 1.4560 -3.4086 5.4785 38 1 1.1452 -1.7633 6.0824 39 1 1.0645 -3.8520 9.1138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308652938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:30 Heat of formation + Delta-G solvation = -7.865638 kcal Electronic energy + Delta-G solvation = -15775.247015 eV Core-core repulsion = 13331.055391 eV Total energy + Delta-G solvation = -2444.191624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52516 -35.88212 -33.82908 -32.58528 -30.79772 -28.68264 -26.99101 -25.70474 -24.10489 -22.47671 -21.15950 -20.14903 -19.23372 -16.49645 -16.12501 -15.72138 -15.20097 -14.63758 -14.47148 -14.25674 -13.85523 -13.41598 -12.63865 -12.53834 -12.35582 -12.11911 -11.86820 -11.58872 -11.48881 -11.39378 -11.02431 -10.89533 -10.70190 -10.65259 -10.51198 -10.40568 -9.67226 -9.31187 -9.03054 -8.61197 -8.32425 -8.15561 -5.97519 -3.99614 3.33638 3.39582 3.43161 3.88165 4.46221 4.50696 4.54685 4.61102 4.94061 5.17257 5.30809 5.37843 5.38304 5.44028 5.46001 5.55226 5.69666 5.72393 5.77101 5.80426 5.89670 5.96681 6.02490 6.12525 6.27810 6.35447 6.62963 6.73987 6.83800 6.90118 7.16079 7.39788 7.65578 7.71107 7.86312 8.03087 8.46297 9.07654 9.64308 11.13968 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048262 B = 0.004392 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.028806 B = 6374.187400 C = 6657.448553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.040 3.960 5 N -0.520 5.520 6 C 0.015 3.985 7 C 0.041 3.959 8 C 0.084 3.916 9 H 0.049 0.951 10 N -0.686 5.686 11 C 0.057 3.943 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.342 0.658 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 5.859 -18.282 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.089 4.089 5 N -0.243 5.243 6 C -0.134 4.134 7 C -0.087 4.087 8 C -0.027 4.027 9 H 0.067 0.933 10 N -0.320 5.320 11 C -0.072 4.072 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.180 5.524 -18.370 19.444 hybrid contribution -1.172 -0.115 1.051 1.578 sum 2.008 5.409 -17.319 18.255 Atomic orbital electron populations 1.21763 0.94183 1.03185 1.01063 1.21997 0.96271 0.99090 0.94168 0.90537 1.23158 0.91205 0.97353 0.97133 1.65355 1.33196 1.23046 1.02746 1.22485 1.00560 0.92750 0.97631 1.23165 0.98569 0.97350 0.89646 1.22188 0.92346 0.94364 0.93834 0.93255 1.60821 1.10333 1.45328 1.15495 1.22169 0.99070 0.98846 0.87068 1.21614 0.95598 0.99683 0.97520 1.19067 0.96573 0.96367 0.89585 1.21263 0.94765 1.41732 0.97940 0.92699 1.25028 0.95665 0.95957 0.97864 1.69969 1.21045 1.47708 1.14895 0.86597 0.82911 0.79228 0.79289 1.20669 1.21257 1.19890 0.92473 0.92933 0.90835 0.93450 0.90544 0.95235 0.91500 0.91314 0.90481 0.92265 0.83702 0.91593 0.95727 0.93732 0.92657 0.96602 0.96803 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.81 37.16 0.29 -1.14 16 2 C -0.10 -1.04 3.65 -89.24 -0.33 -1.37 16 3 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.04 0.42 6.04 -2.18 -0.01 0.40 16 5 N -0.52 -6.13 5.66 -238.24 -1.35 -7.48 16 6 C 0.01 0.14 9.53 60.06 0.57 0.72 16 7 C 0.04 0.54 5.80 -2.18 -0.01 0.52 16 8 C 0.08 1.09 3.34 -66.33 -0.22 0.87 16 9 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 10 N -0.69 -10.02 5.32 -105.27 -0.56 -10.58 16 11 C 0.06 1.00 5.52 -3.83 -0.02 0.98 16 12 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 18 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.06 0.56 7.06 -51.93 -0.37 0.19 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.83 7.54 -51.92 -0.39 0.44 16 25 H 0.05 0.50 7.62 -51.93 -0.40 0.11 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 32 H 0.34 4.69 6.19 -39.29 -0.24 4.44 16 33 H 0.07 1.19 7.86 -51.93 -0.41 0.78 16 34 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 307.44 15.07 4.63 4.63 Total: -1.00 -30.08 307.44 -9.22 -39.30 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.23 Total: -1.47 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.43 Total: -14.70 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -1.17 Total: -44.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.08 -9.22 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.434 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds