Wall clock time and date at job start Mon Mar 30 2020 03:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.36760 * 2 1 4 4 C 1.54374 * 110.32627 * 237.81551 * 2 1 3 5 5 N 1.48562 * 104.59891 * 217.25137 * 4 2 1 6 6 C 1.46896 * 111.00102 * 159.03972 * 5 4 2 7 7 C 1.48568 * 104.21755 * 39.48414 * 5 4 2 8 8 C 1.54268 * 110.32317 * 122.18143 * 2 1 3 9 9 H 1.09002 * 110.32347 * 237.79510 * 8 2 1 10 10 N 1.46900 * 110.32359 * 359.89995 * 8 2 1 11 11 C 1.46898 * 111.00221 * 195.67934 * 10 8 2 12 12 C 1.53000 * 109.47166 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46684 * 179.97438 * 12 11 10 14 14 C 1.50711 * 109.47014 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99445 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00130 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00049 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47291 * 89.99700 * 18 16 14 20 20 H 1.48499 * 109.47149 * 210.00028 * 18 16 14 21 21 H 1.48497 * 109.46773 * 329.99529 * 18 16 14 22 22 H 1.08994 * 109.47824 * 304.11808 * 1 2 3 23 23 H 1.09001 * 109.47264 * 64.12486 * 1 2 3 24 24 H 1.09009 * 109.47008 * 184.11723 * 1 2 3 25 25 H 1.08999 * 110.41337 * 336.03475 * 4 2 1 26 26 H 1.09003 * 110.41163 * 98.47563 * 4 2 1 27 27 H 1.08994 * 109.47686 * 304.58521 * 6 5 4 28 28 H 1.09007 * 109.46890 * 64.58617 * 6 5 4 29 29 H 1.08995 * 109.47272 * 184.58112 * 6 5 4 30 30 H 1.09002 * 110.40652 * 201.74018 * 7 5 4 31 31 H 1.08995 * 110.50730 * 79.34627 * 7 5 4 32 32 H 1.00904 * 110.99976 * 319.62820 * 10 8 2 33 33 H 1.09000 * 109.46601 * 299.99803 * 11 10 8 34 34 H 1.08998 * 109.47109 * 59.99365 * 11 10 8 35 35 H 1.09000 * 109.47140 * 299.99400 * 12 11 10 36 36 H 1.08998 * 109.46994 * 59.99934 * 12 11 10 37 37 H 1.08992 * 109.47474 * 299.99918 * 13 12 11 38 38 H 1.08998 * 109.47129 * 60.00421 * 13 12 11 39 39 H 0.96999 * 119.99727 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2694 -1.4829 -0.7224 6 6 3.6069 -2.6217 -1.5867 7 6 2.8806 -1.9422 0.6360 8 6 2.0658 -0.7705 1.2244 9 1 2.7081 -0.1268 1.8254 10 7 0.9512 -1.2781 2.0356 11 6 1.4124 -1.6805 3.3709 12 6 0.2264 -2.2030 4.1841 13 6 0.7070 -2.6226 5.5748 14 6 -0.4613 -3.1368 6.3761 15 1 -1.4477 -3.1620 5.9371 16 6 -0.2708 -3.5748 7.6694 17 7 0.9304 -3.5435 8.2040 18 14 -1.7187 -4.2127 8.6623 19 1 -1.8576 -5.6760 8.4510 20 1 -1.4887 -3.9404 10.1039 21 1 -2.9609 -3.5287 8.2214 22 1 -0.3634 0.5764 0.8507 23 1 -0.3634 0.4485 -0.9246 24 1 -0.3633 -1.0251 0.0738 25 1 1.3229 -1.4848 -1.5803 26 1 2.3395 -0.0779 -2.0208 27 1 2.7426 -3.2800 -1.6745 28 1 3.8878 -2.2572 -2.5748 29 1 4.4407 -3.1730 -1.1523 30 1 3.7670 -2.1308 1.2416 31 1 2.2654 -2.8398 0.5740 32 1 0.2103 -0.5960 2.0993 33 1 2.1613 -2.4667 3.2750 34 1 1.8508 -0.8211 3.8781 35 1 -0.5228 -1.4171 4.2801 36 1 -0.2115 -3.0625 3.6767 37 1 1.4560 -3.4086 5.4785 38 1 1.1452 -1.7633 6.0824 39 1 1.0645 -3.8520 9.1138 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308652938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:30 Heat of formation + Delta-G solvation = -28.222496 kcal Electronic energy + Delta-G solvation = -15776.129755 eV Core-core repulsion = 13331.055391 eV Total energy + Delta-G solvation = -2445.074364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49897 -37.24820 -35.50483 -34.06892 -32.37046 -29.83706 -28.22437 -27.14998 -25.19616 -24.12793 -22.26575 -21.77990 -20.26724 -18.49968 -17.28998 -16.91630 -16.57454 -16.24528 -15.61677 -15.39598 -15.19082 -14.51171 -14.34978 -13.82201 -13.51558 -13.34928 -13.23078 -13.04619 -12.80410 -12.54743 -12.42920 -12.33724 -12.23433 -11.91063 -11.68025 -11.64176 -11.47003 -11.35731 -11.04439 -10.55746 -9.52596 -9.38575 -8.20332 -6.31644 1.40067 1.41704 1.52875 2.40968 2.91818 3.12834 3.43689 3.59766 3.64665 4.05428 4.21559 4.29216 4.40049 4.43487 4.52087 4.58412 4.60446 4.70760 4.75735 4.81483 4.85616 4.92033 4.97992 5.02435 5.10478 5.11197 5.21674 5.26623 5.46260 5.51421 5.74233 5.75735 5.85431 6.01968 6.09987 6.26931 6.49701 6.85378 7.37789 8.91727 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.048262 B = 0.004392 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.028806 B = 6374.187400 C = 6657.448553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.087 0.913 4 C 0.041 3.959 5 N -0.528 5.528 6 C 0.014 3.986 7 C 0.043 3.957 8 C 0.080 3.920 9 H 0.043 0.957 10 N -0.680 5.680 11 C 0.071 3.929 12 C -0.091 4.091 13 C 0.024 3.976 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.262 1.262 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.349 0.651 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.051 0.949 36 H 0.052 0.948 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 6.352 -19.447 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.087 4.087 5 N -0.252 5.252 6 C -0.135 4.135 7 C -0.086 4.086 8 C -0.030 4.030 9 H 0.061 0.939 10 N -0.315 5.315 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.186 1.186 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.171 0.829 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.030 6.026 -19.561 20.569 hybrid contribution -0.763 -0.259 1.377 1.595 sum 1.267 5.767 -18.184 19.119 Atomic orbital electron populations 1.21717 0.93384 1.02492 1.02200 1.22009 0.96893 0.99228 0.92920 0.89493 1.23218 0.90718 0.97459 0.97303 1.65370 1.33779 1.23762 1.02328 1.22540 1.00528 0.92312 0.98101 1.23071 0.97955 0.96826 0.90726 1.22243 0.91779 0.94568 0.94430 0.93945 1.60745 1.11095 1.46066 1.13613 1.21858 0.97279 0.98419 0.88271 1.21357 0.96818 0.99789 0.94891 1.18977 0.95433 0.94531 0.92376 1.21704 0.95570 1.42084 0.98775 0.92178 1.26003 0.98747 0.95999 0.99159 1.70103 1.23427 1.48510 1.15453 0.85426 0.79255 0.78799 0.77447 1.19772 1.20678 1.18648 0.92255 0.91038 0.92246 0.93441 0.88816 0.95360 0.89772 0.91264 0.91325 0.93651 0.82853 0.92406 0.96041 0.92998 0.92918 0.99170 0.99122 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.81 71.98 0.56 -1.91 16 2 C -0.09 -1.79 3.65 -9.90 -0.04 -1.83 16 3 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.04 0.77 6.04 86.45 0.52 1.29 16 5 N -0.53 -11.72 5.66 -907.64 -5.14 -16.86 16 6 C 0.01 0.25 9.53 127.69 1.22 1.47 16 7 C 0.04 1.11 5.80 86.45 0.50 1.61 16 8 C 0.08 2.03 3.34 45.81 0.15 2.18 16 9 H 0.04 1.14 7.97 -2.39 -0.02 1.13 16 10 N -0.68 -19.39 5.32 -486.96 -2.59 -21.98 16 11 C 0.07 2.50 5.52 86.30 0.48 2.98 16 12 C -0.09 -3.82 5.41 30.59 0.17 -3.65 16 13 C 0.02 1.33 4.97 29.85 0.15 1.47 16 14 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 16 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 17 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 18 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 H 0.06 1.02 7.06 -2.39 -0.02 1.01 16 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.23 7.54 -2.38 -0.02 1.22 16 25 H 0.05 0.90 7.62 -2.39 -0.02 0.88 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 0.52 7.97 -2.39 -0.02 0.50 16 28 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.28 7.89 -2.39 -0.02 1.27 16 32 H 0.35 9.11 6.19 -89.69 -0.55 8.55 16 33 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 34 H 0.02 0.77 8.09 -2.39 -0.02 0.75 16 35 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -64.16 307.44 -0.58 -64.74 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.43 Total: 12.23 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.41 Total: -27.40 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -7.45 Total: -96.39 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.16 -0.58 -64.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.521 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds