Wall clock time and date at job start Mon Mar 30 2020 03:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.36810 * 2 1 4 4 C 1.54609 * 110.39875 * 122.27791 * 2 1 3 5 5 N 1.48565 * 104.63084 * 142.64997 * 4 2 1 6 6 C 1.46905 * 110.99589 * 200.99622 * 5 4 2 7 7 C 1.48558 * 104.22325 * 320.54815 * 5 4 2 8 8 C 1.54262 * 110.31975 * 237.82489 * 2 1 3 9 9 H 1.09002 * 110.32521 * 122.20762 * 8 2 1 10 10 N 1.46904 * 110.32272 * 0.10119 * 8 2 1 11 11 C 1.46901 * 110.99595 * 156.43207 * 10 8 2 12 12 C 1.53000 * 109.46848 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.47100 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47205 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00167 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99823 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47243 * 90.00254 * 18 16 14 20 20 H 1.48500 * 109.46921 * 209.99895 * 18 16 14 21 21 H 1.48502 * 109.47341 * 330.00138 * 18 16 14 22 22 H 1.08993 * 109.47096 * 182.17708 * 1 2 3 23 23 H 1.09008 * 109.46807 * 302.17798 * 1 2 3 24 24 H 1.09006 * 109.47099 * 62.16997 * 1 2 3 25 25 H 1.08992 * 110.36274 * 23.87369 * 4 2 1 26 26 H 1.08997 * 110.42206 * 261.45022 * 4 2 1 27 27 H 1.08995 * 109.46954 * 175.41595 * 6 5 4 28 28 H 1.08996 * 109.47115 * 295.41638 * 6 5 4 29 29 H 1.08998 * 109.47156 * 55.41855 * 6 5 4 30 30 H 1.09001 * 110.41527 * 280.70786 * 7 5 4 31 31 H 1.08997 * 110.51120 * 158.31373 * 7 5 4 32 32 H 1.00903 * 110.99863 * 280.37703 * 10 8 2 33 33 H 1.09010 * 109.46779 * 299.99614 * 11 10 8 34 34 H 1.08995 * 109.47740 * 59.99526 * 11 10 8 35 35 H 1.09001 * 109.46870 * 299.99065 * 12 11 10 36 36 H 1.08995 * 109.47338 * 59.99669 * 12 11 10 37 37 H 1.08997 * 109.47104 * 299.99763 * 13 12 11 38 38 H 1.08998 * 109.46660 * 59.99475 * 13 12 11 39 39 H 0.96995 * 120.00086 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0690 -0.7739 1.2252 5 7 3.2708 -1.4863 0.7201 6 6 3.6080 -2.6266 1.5827 7 6 2.8800 -1.9437 -0.6382 8 6 2.0658 -0.7703 -1.2245 9 1 2.7081 -0.1266 -1.8254 10 7 0.9511 -1.2778 -2.0356 11 6 1.3714 -1.5039 -3.4250 12 6 0.1863 -2.0303 -4.2370 13 6 0.6238 -2.2652 -5.6842 14 6 -0.5432 -2.7843 -6.4839 15 1 -1.5013 -2.9315 -6.0077 16 6 -0.3882 -3.0703 -7.8237 17 7 0.7784 -2.8905 -8.4037 18 14 -1.8350 -3.7130 -8.8151 19 1 -2.5810 -2.5701 -9.4002 20 1 -1.3374 -4.5895 -9.9057 21 1 -2.7368 -4.4905 -7.9277 22 1 -0.3633 -1.0269 0.0390 23 1 -0.3633 0.5473 0.8699 24 1 -0.3633 0.4798 -0.9089 25 1 1.3254 -1.4873 1.5802 26 1 2.3439 -0.0820 2.0213 27 1 4.4408 -3.1783 1.1466 28 1 3.8904 -2.2636 2.5709 29 1 2.7431 -3.2840 1.6706 30 1 2.2633 -2.8402 -0.5748 31 1 3.7644 -2.1339 -1.2463 32 1 0.5647 -2.1187 -1.6334 33 1 1.7189 -0.5652 -3.8567 34 1 2.1798 -2.2346 -3.4458 35 1 -0.1616 -2.9689 -3.8054 36 1 -0.6218 -1.2992 -4.2162 37 1 0.9715 -1.3265 -6.1156 38 1 1.4321 -2.9961 -5.7053 39 1 0.8876 -3.0920 -9.3462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308652940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:34 Heat of formation + Delta-G solvation = -10.307290 kcal Electronic energy + Delta-G solvation = -15764.075360 eV Core-core repulsion = 13319.777857 eV Total energy + Delta-G solvation = -2444.297502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56645 -35.83951 -33.75161 -32.61492 -30.89660 -28.54196 -26.95816 -25.66443 -24.09275 -22.39464 -21.40936 -20.26827 -19.28396 -16.59926 -16.07167 -15.65228 -15.11972 -14.55939 -14.42894 -14.11986 -13.68642 -13.42580 -13.00940 -12.60328 -12.29297 -12.24736 -11.77392 -11.73970 -11.53818 -11.32110 -11.03266 -10.86174 -10.75241 -10.55196 -10.48425 -10.39005 -9.68553 -9.31548 -9.03414 -8.72783 -8.32636 -8.11718 -5.97817 -3.99900 3.33489 3.39463 3.42987 3.83482 4.40628 4.48404 4.55217 4.69133 4.98460 5.12717 5.18995 5.25413 5.36961 5.38022 5.50317 5.61104 5.62838 5.68267 5.75350 5.80106 5.90908 5.96450 6.11553 6.27325 6.34154 6.46405 6.59409 6.74033 6.81499 6.82740 7.15443 7.37769 7.61990 7.70699 7.85831 8.02785 8.46026 9.07413 9.64051 11.13673 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.049898 B = 0.004339 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.012773 B = 6451.872812 C = 6701.668092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 H 0.078 0.922 4 C 0.033 3.967 5 N -0.516 5.516 6 C 0.014 3.986 7 C 0.004 3.996 8 C 0.085 3.915 9 H 0.087 0.913 10 N -0.677 5.677 11 C 0.057 3.943 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.336 0.664 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.013 0.987 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 3.186 18.881 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.095 4.095 5 N -0.239 5.239 6 C -0.135 4.135 7 C -0.126 4.126 8 C -0.026 4.026 9 H 0.105 0.895 10 N -0.307 5.307 11 C -0.071 4.071 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.650 4.123 18.566 19.365 hybrid contribution -0.753 -1.862 -0.486 2.067 sum 2.897 2.261 18.080 18.450 Atomic orbital electron populations 1.21521 0.93569 1.01620 1.01380 1.21975 0.96778 0.99103 0.92899 0.90372 1.23325 0.90941 0.97419 0.97839 1.65319 1.33452 1.22767 1.02375 1.22504 1.00426 0.92752 0.97862 1.23950 1.00058 0.97572 0.91036 1.22344 0.91045 0.95008 0.94204 0.89494 1.60787 1.30557 1.36477 1.02868 1.22179 0.97936 0.99876 0.87105 1.21617 0.96139 0.99141 0.97550 1.19066 0.96591 0.96850 0.89077 1.21259 0.96835 1.43266 0.94346 0.92704 1.25028 0.95720 0.95811 0.97955 1.69967 1.22972 1.49162 1.11519 0.86598 0.82737 0.78860 0.79831 1.20650 1.21265 1.19904 0.93058 0.94102 0.90961 0.93773 0.90400 0.91367 0.91351 0.95430 0.93719 0.90154 0.84544 0.91403 0.95787 0.93809 0.92570 0.96565 0.96848 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.12 37.16 0.30 -1.04 16 2 C -0.09 -0.97 3.66 -89.11 -0.33 -1.30 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.03 0.34 6.05 -2.06 -0.01 0.32 16 5 N -0.52 -5.82 5.66 -238.08 -1.35 -7.17 16 6 C 0.01 0.13 9.53 60.07 0.57 0.70 16 7 C 0.00 0.04 6.14 -2.18 -0.01 0.03 16 8 C 0.09 1.08 3.35 -66.32 -0.22 0.85 16 9 H 0.09 1.16 7.84 -51.93 -0.41 0.76 16 10 N -0.68 -9.61 4.55 -105.25 -0.48 -10.09 16 11 C 0.06 0.99 5.53 -3.82 -0.02 0.96 16 12 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.05 0.57 7.48 -51.93 -0.39 0.18 16 23 H 0.04 0.39 8.14 -51.92 -0.42 -0.04 16 24 H 0.07 0.89 7.84 -51.93 -0.41 0.49 16 25 H 0.04 0.45 7.59 -51.93 -0.39 0.05 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.25 7.97 -51.93 -0.41 -0.16 16 30 H 0.04 0.54 7.40 -51.93 -0.38 0.16 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.34 4.60 7.67 -39.29 -0.30 4.30 16 33 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -29.74 309.16 -9.18 -38.91 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.31 Total: -1.55 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.42 Total: -15.09 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -1.09 Total: -43.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.74 -9.18 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.605 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds