Wall clock time and date at job start Mon Mar 30 2020 03:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.36810 * 2 1 4 4 C 1.54609 * 110.39875 * 122.27791 * 2 1 3 5 5 N 1.48565 * 104.63084 * 142.64997 * 4 2 1 6 6 C 1.46905 * 110.99589 * 200.99622 * 5 4 2 7 7 C 1.48558 * 104.22325 * 320.54815 * 5 4 2 8 8 C 1.54262 * 110.31975 * 237.82489 * 2 1 3 9 9 H 1.09002 * 110.32521 * 122.20762 * 8 2 1 10 10 N 1.46904 * 110.32272 * 0.10119 * 8 2 1 11 11 C 1.46901 * 110.99595 * 156.43207 * 10 8 2 12 12 C 1.53000 * 109.46848 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.47100 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47205 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99690 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00167 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99823 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47243 * 90.00254 * 18 16 14 20 20 H 1.48500 * 109.46921 * 209.99895 * 18 16 14 21 21 H 1.48502 * 109.47341 * 330.00138 * 18 16 14 22 22 H 1.08993 * 109.47096 * 182.17708 * 1 2 3 23 23 H 1.09008 * 109.46807 * 302.17798 * 1 2 3 24 24 H 1.09006 * 109.47099 * 62.16997 * 1 2 3 25 25 H 1.08992 * 110.36274 * 23.87369 * 4 2 1 26 26 H 1.08997 * 110.42206 * 261.45022 * 4 2 1 27 27 H 1.08995 * 109.46954 * 175.41595 * 6 5 4 28 28 H 1.08996 * 109.47115 * 295.41638 * 6 5 4 29 29 H 1.08998 * 109.47156 * 55.41855 * 6 5 4 30 30 H 1.09001 * 110.41527 * 280.70786 * 7 5 4 31 31 H 1.08997 * 110.51120 * 158.31373 * 7 5 4 32 32 H 1.00903 * 110.99863 * 280.37703 * 10 8 2 33 33 H 1.09010 * 109.46779 * 299.99614 * 11 10 8 34 34 H 1.08995 * 109.47740 * 59.99526 * 11 10 8 35 35 H 1.09001 * 109.46870 * 299.99065 * 12 11 10 36 36 H 1.08995 * 109.47338 * 59.99669 * 12 11 10 37 37 H 1.08997 * 109.47104 * 299.99763 * 13 12 11 38 38 H 1.08998 * 109.46660 * 59.99475 * 13 12 11 39 39 H 0.96995 * 120.00086 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0690 -0.7739 1.2252 5 7 3.2708 -1.4863 0.7201 6 6 3.6080 -2.6266 1.5827 7 6 2.8800 -1.9437 -0.6382 8 6 2.0658 -0.7703 -1.2245 9 1 2.7081 -0.1266 -1.8254 10 7 0.9511 -1.2778 -2.0356 11 6 1.3714 -1.5039 -3.4250 12 6 0.1863 -2.0303 -4.2370 13 6 0.6238 -2.2652 -5.6842 14 6 -0.5432 -2.7843 -6.4839 15 1 -1.5013 -2.9315 -6.0077 16 6 -0.3882 -3.0703 -7.8237 17 7 0.7784 -2.8905 -8.4037 18 14 -1.8350 -3.7130 -8.8151 19 1 -2.5810 -2.5701 -9.4002 20 1 -1.3374 -4.5895 -9.9057 21 1 -2.7368 -4.4905 -7.9277 22 1 -0.3633 -1.0269 0.0390 23 1 -0.3633 0.5473 0.8699 24 1 -0.3633 0.4798 -0.9089 25 1 1.3254 -1.4873 1.5802 26 1 2.3439 -0.0820 2.0213 27 1 4.4408 -3.1783 1.1466 28 1 3.8904 -2.2636 2.5709 29 1 2.7431 -3.2840 1.6706 30 1 2.2633 -2.8402 -0.5748 31 1 3.7644 -2.1339 -1.2463 32 1 0.5647 -2.1187 -1.6334 33 1 1.7189 -0.5652 -3.8567 34 1 2.1798 -2.2346 -3.4458 35 1 -0.1616 -2.9689 -3.8054 36 1 -0.6218 -1.2992 -4.2162 37 1 0.9715 -1.3265 -6.1156 38 1 1.4321 -2.9961 -5.7053 39 1 0.8876 -3.0920 -9.3462 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308652940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:34 Heat of formation + Delta-G solvation = -30.036283 kcal Electronic energy + Delta-G solvation = -15764.930873 eV Core-core repulsion = 13319.777857 eV Total energy + Delta-G solvation = -2445.153016 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.51599 -37.20132 -35.43417 -34.02064 -32.47697 -29.73170 -28.10117 -27.13502 -25.15375 -24.08786 -22.30313 -21.98335 -20.32106 -18.52237 -17.34634 -16.71328 -16.54187 -16.21174 -15.54526 -15.34804 -14.81144 -14.53328 -14.23046 -14.11569 -13.68178 -13.36750 -13.27497 -13.08748 -12.76416 -12.51686 -12.42679 -12.36972 -12.30680 -11.94010 -11.65929 -11.52798 -11.39341 -11.35310 -11.02808 -10.55361 -9.59785 -9.28991 -8.20131 -6.31301 1.40134 1.41697 1.52796 2.41086 2.92684 3.13054 3.36570 3.60266 3.75109 4.06215 4.19691 4.25295 4.39047 4.40741 4.50199 4.52267 4.63156 4.72089 4.74833 4.84670 4.86311 4.90535 4.95914 5.04148 5.12408 5.22440 5.26811 5.38955 5.52043 5.58141 5.74872 5.75533 5.86180 6.00699 6.10664 6.27539 6.45763 6.85876 7.38095 8.91888 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.049898 B = 0.004339 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.012773 B = 6451.872812 C = 6701.668092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 H 0.082 0.918 4 C 0.037 3.963 5 N -0.527 5.527 6 C 0.013 3.987 7 C 0.008 3.992 8 C 0.083 3.917 9 H 0.077 0.923 10 N -0.671 5.671 11 C 0.072 3.928 12 C -0.091 4.091 13 C 0.024 3.976 14 C -0.543 4.543 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.342 0.658 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.049 0.951 36 H 0.053 0.947 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 2.995 20.206 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.091 4.091 5 N -0.251 5.251 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.028 4.028 9 H 0.095 0.905 10 N -0.301 5.301 11 C -0.057 4.057 12 C -0.129 4.129 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.695 3.936 19.920 20.483 hybrid contribution -0.408 -1.782 -0.867 2.023 sum 2.287 2.154 19.053 19.310 Atomic orbital electron populations 1.21454 0.93310 1.01482 1.01305 1.21960 0.96911 0.99166 0.92356 0.89987 1.23330 0.90652 0.97512 0.97573 1.65327 1.33935 1.23630 1.02195 1.22556 1.00569 0.92291 0.98170 1.23834 0.99534 0.97138 0.91711 1.22372 0.90562 0.95326 0.94505 0.90503 1.60721 1.31246 1.36671 1.01490 1.21860 0.96149 0.99164 0.88521 1.21358 0.97253 0.99517 0.94756 1.18977 0.95365 0.94683 0.92294 1.21705 0.97651 1.43549 0.95221 0.92223 1.25996 0.98766 0.95875 0.99259 1.70099 1.25296 1.50042 1.12043 0.85436 0.78994 0.78445 0.78111 1.19746 1.20698 1.18700 0.93335 0.92385 0.92670 0.93297 0.89039 0.91285 0.89930 0.95158 0.93790 0.90954 0.83917 0.92102 0.96046 0.93226 0.92807 0.99081 0.99169 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.12 71.98 0.58 -1.76 16 2 C -0.08 -1.71 3.66 -9.82 -0.04 -1.75 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.04 0.67 6.05 86.53 0.52 1.20 16 5 N -0.53 -10.94 5.66 -907.15 -5.14 -16.08 16 6 C 0.01 0.21 9.53 127.69 1.22 1.43 16 7 C 0.01 0.18 6.14 86.45 0.53 0.71 16 8 C 0.08 2.03 3.35 45.81 0.15 2.18 16 9 H 0.08 2.03 7.84 -2.39 -0.02 2.01 16 10 N -0.67 -18.53 4.55 -486.92 -2.22 -20.74 16 11 C 0.07 2.48 5.53 86.30 0.48 2.96 16 12 C -0.09 -3.79 5.41 30.60 0.17 -3.62 16 13 C 0.02 1.32 4.97 29.85 0.15 1.46 16 14 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 15 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 18 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 22 H 0.05 0.99 7.48 -2.39 -0.02 0.97 16 23 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.05 1.30 7.84 -2.38 -0.02 1.28 16 25 H 0.05 0.85 7.59 -2.39 -0.02 0.84 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.49 7.97 -2.39 -0.02 0.47 16 30 H 0.04 1.01 7.40 -2.39 -0.02 1.00 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.34 8.93 7.67 -89.69 -0.69 8.24 16 33 H 0.06 2.18 8.07 -2.38 -0.02 2.16 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -63.20 309.16 -0.28 -63.49 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.30 Total: 12.08 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.46 Total: -28.10 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -7.07 Total: -94.23 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.20 -0.28 -63.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.449 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds