Wall clock time and date at job start Mon Mar 30 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.48694 * 2 1 4 4 N 1.46952 * 109.48856 * 120.06908 * 2 1 3 5 5 C 1.46955 * 110.88041 * 179.29455 * 4 2 1 6 6 C 1.53054 * 109.36186 * 300.67415 * 5 4 2 7 7 N 1.46964 * 109.36201 * 58.40126 * 6 5 4 8 8 C 1.46902 * 110.99859 * 176.80934 * 7 6 5 9 9 C 1.52992 * 109.47262 * 313.80463 * 8 7 6 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 8 7 11 11 C 1.50693 * 109.47257 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00265 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99944 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99912 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99749 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47041 * 90.00583 * 15 13 11 17 17 H 1.48501 * 109.47102 * 210.00262 * 15 13 11 18 18 H 1.48493 * 109.47540 * 330.00221 * 15 13 11 19 19 C 1.46955 * 110.88147 * 300.68188 * 7 6 5 20 20 H 1.09007 * 109.48786 * 299.35318 * 19 7 6 21 21 C 1.52997 * 109.50522 * 179.30042 * 19 7 6 22 22 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.04326 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.04155 * 1 2 3 25 25 H 1.00900 * 110.99926 * 303.15546 * 4 2 1 26 26 H 1.08995 * 109.49009 * 180.71085 * 5 4 2 27 27 H 1.08999 * 109.51048 * 60.65207 * 5 4 2 28 28 H 1.09003 * 109.49235 * 298.43688 * 6 5 4 29 29 H 1.08992 * 109.49072 * 178.37114 * 6 5 4 30 30 H 1.09002 * 109.46576 * 73.80314 * 8 7 6 31 31 H 1.09001 * 109.47006 * 193.79749 * 8 7 6 32 32 H 1.09002 * 109.47204 * 299.99467 * 9 8 7 33 33 H 1.09001 * 109.47693 * 59.99707 * 9 8 7 34 34 H 1.09002 * 109.46619 * 299.99865 * 10 9 8 35 35 H 1.09001 * 109.46984 * 59.99313 * 10 9 8 36 36 H 0.97001 * 120.00095 * 179.97438 * 14 13 11 37 37 H 1.08999 * 109.47086 * 300.09825 * 21 19 7 38 38 H 1.09003 * 109.47399 * 60.09964 * 21 19 7 39 39 H 1.09004 * 109.46800 * 180.09571 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 7 2.0203 -0.6941 1.1989 5 6 3.4893 -0.7266 1.2213 6 6 4.0000 -1.4490 -0.0276 7 7 3.5097 -0.7549 -1.2266 8 6 4.0412 -1.3744 -2.4479 9 6 5.5428 -1.6178 -2.2844 10 6 6.0963 -2.2637 -3.5562 11 6 7.5752 -2.5040 -3.3949 12 1 8.0709 -2.2237 -2.4773 13 6 8.2957 -3.0808 -4.4193 14 7 9.5864 -3.2900 -4.2787 15 14 7.4384 -3.5649 -6.0067 16 1 7.4747 -2.4242 -6.9568 17 1 8.1323 -4.7321 -6.6080 18 1 6.0267 -3.9235 -5.7176 19 6 2.0407 -0.7222 -1.2490 20 1 1.6545 -1.7415 -1.2631 21 6 1.5652 0.0211 -2.4988 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5145 0.8895 24 1 -0.3633 0.5132 -0.8904 25 1 1.6553 -0.2685 2.0378 26 1 3.8278 -1.2565 2.1117 27 1 3.8759 0.2924 1.2356 28 1 3.6361 -2.4764 -0.0279 29 1 5.0900 -1.4490 -0.0276 30 1 3.5361 -2.3244 -2.6228 31 1 3.8708 -0.7109 -3.2958 32 1 6.0479 -0.6678 -2.1096 33 1 5.7132 -2.2813 -1.4366 34 1 5.5911 -3.2137 -3.7306 35 1 5.9259 -1.6005 -4.4043 36 1 10.0933 -3.6961 -4.9992 37 1 1.9522 1.0400 -2.4848 38 1 1.9289 -0.4935 -3.3882 39 1 0.4755 0.0465 -2.5139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379473105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:52 Heat of formation + Delta-G solvation = -6.404455 kcal Electronic energy + Delta-G solvation = -16231.142543 eV Core-core repulsion = 13787.014280 eV Total energy + Delta-G solvation = -2444.128263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53944 -35.66240 -33.53182 -33.17133 -31.37083 -28.52119 -27.63793 -26.34237 -23.86996 -22.02245 -21.39711 -19.73707 -19.43785 -16.70163 -16.27341 -15.51172 -15.25413 -14.78762 -14.51198 -14.06407 -13.74025 -13.58874 -12.71899 -12.55676 -12.48977 -12.34358 -11.90348 -11.74471 -11.61579 -11.51929 -11.08088 -10.97564 -10.78511 -10.52184 -10.39025 -9.83294 -9.67300 -9.54390 -9.13339 -8.56528 -8.51132 -8.04123 -6.01829 -3.99418 3.32445 3.39571 3.43647 4.04216 4.06517 4.47570 4.71267 4.98975 5.06741 5.27017 5.32197 5.35701 5.39265 5.41535 5.48489 5.59722 5.71215 5.77318 5.79780 5.83808 5.89160 6.04307 6.11483 6.13477 6.21457 6.30421 6.56768 6.62949 6.89105 6.93399 7.20223 7.32041 7.36757 7.40676 7.49208 7.82964 8.57301 9.03431 9.60996 11.11783 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.005522 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.720792 B = 5069.463714 C = 5543.451616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.090 3.910 3 H 0.045 0.955 4 N -0.690 5.690 5 C 0.060 3.940 6 C 0.050 3.950 7 N -0.537 5.537 8 C 0.054 3.946 9 C -0.104 4.104 10 C -0.013 4.013 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C 0.087 3.913 20 H 0.044 0.956 21 C -0.149 4.149 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.338 0.662 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 6.526 8.299 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 H 0.063 0.937 4 N -0.321 5.321 5 C -0.070 4.070 6 C -0.078 4.078 7 N -0.262 5.262 8 C -0.073 4.073 9 C -0.142 4.142 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.022 4.022 20 H 0.062 0.938 21 C -0.206 4.206 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.156 0.844 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.677 6.309 7.943 20.381 hybrid contribution -0.328 -0.235 -0.688 0.798 sum -18.005 6.074 7.255 20.340 Atomic orbital electron populations 1.21867 0.94384 1.02482 1.01662 1.21527 0.94619 0.95737 0.90111 0.93714 1.60558 1.08878 1.58151 1.04541 1.22017 0.87173 0.99539 0.98248 1.22269 1.00968 0.95636 0.88921 1.62263 1.07025 1.54079 1.02805 1.22326 0.96991 0.96560 0.91469 1.21617 0.91664 1.00851 1.00089 1.19546 0.96988 0.95290 0.93236 1.21144 0.91515 1.40104 1.02851 0.91073 1.25037 0.94690 0.95283 0.98538 1.69919 1.06738 1.44476 1.33287 0.86768 0.80238 0.78301 0.83915 1.20291 1.21430 1.19091 1.21649 0.88186 0.98129 0.94228 0.93765 1.21934 1.00435 1.01179 0.97095 0.91932 0.92811 0.91730 0.84415 0.90475 0.94395 0.94342 0.88975 0.95418 0.90922 0.92036 0.92586 0.96859 0.97062 0.92790 0.91911 0.92064 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.15 37.16 0.34 -0.96 16 2 C 0.09 1.02 2.70 -67.66 -0.18 0.83 16 3 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 4 N -0.69 -7.77 6.55 -106.59 -0.70 -8.47 16 5 C 0.06 0.72 6.72 -3.77 -0.03 0.70 16 6 C 0.05 0.74 4.93 -3.76 -0.02 0.72 16 7 N -0.54 -8.22 4.68 -226.49 -1.06 -9.28 16 8 C 0.05 0.92 4.46 -3.83 -0.02 0.90 16 9 C -0.10 -2.12 4.42 -26.73 -0.12 -2.24 16 10 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 12 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 15 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 19 C 0.09 1.15 2.03 -67.66 -0.14 1.01 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 C -0.15 -1.72 8.55 37.16 0.32 -1.40 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.52 6.47 -51.93 -0.34 0.18 16 25 H 0.34 3.09 8.83 -39.29 -0.35 2.75 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.43 5.99 -51.93 -0.31 1.12 16 30 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.07 1.22 6.86 -51.93 -0.36 0.87 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.13 6.26 -51.93 -0.33 0.81 16 34 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 35 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.75 6.60 -51.93 -0.34 0.41 16 39 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 LS Contribution 295.44 15.07 4.45 4.45 Total: -1.00 -30.89 295.44 -8.52 -39.40 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.93 Total: -1.56 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.38 Total: -14.41 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.98 Total: -45.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.89 -8.52 -39.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379473105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.000 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds